ID:

dsi_9960

 Coordinate:

3r:22146770-22146827 -

 Confidence:

Known Ortholog

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3r_22146622_22146769_-]; exon [3r_22146828_22147111_-]; CDS [3r_22146622_22146769_-]; CDS [3r_22146828_22147111_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------##################################################
GGCAGCAGCATTTGTCTCTTTGATAGTAAAGCCACTAATCCAAAAGAACGGTGGGTAGAACTTTGATTAATATTGCTTGAGAATATTAGTCAAAGATTTTCCCCATAGATTTATCAATTTTGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGAC
**************************************************(((((.((((((((((((((((((.......)))))))))))))).)))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 M025
embryo
 O001
Testis
 O002
Head
 GSM343915
embryo
 SRR902009
testis
 SRR902008
ovaries
..................................................GTGGGTAGAACTTTGATTAAT....................................................................................... 21 0 1 13368.00 13368 4205 3183 1125 670 2536 942 290 68 178 12 26 66 57 10
..................................................GTGGGTAGAACTTTGATTAATA...................................................................................... 22 0 1 9601.00 9601 3840 3066 546 259 653 335 225 42 442 15 8 138 27 5
.....................................................................................TTAGTCAAAGATTTTCCCCATAG.................................................. 23 0 1 8427.00 8427 954 837 2366 1901 407 91 227 666 295 244 160 105 141 33
.....................................................................................TTAGTCAAAGATTTTCCCCATA................................................... 22 0 1 3904.00 3904 1072 1081 870 613 7 11 31 53 4 80 48 18 15 1
.....................................................................................TTAGTCAAAGATTTTCCCCATAGA................................................. 24 0 1 2122.00 2122 790 637 383 243 6 1 2 18 8 22 7 2 3 0
..................................................GTGGGTAGAACTTTGATTAATAAA.................................................................................... 24 2 1 1591.00 1591 581 438 356 164 0 0 9 3 3 0 0 1 17 19
..................................................GTGGGTAGAACTTTGATTAATAA..................................................................................... 23 1 1 1256.00 1256 457 393 257 122 2 2 6 1 7 0 0 2 7 0
..................................................GTGGGTAGAACTTTGATTAA........................................................................................ 20 0 1 1185.00 1185 441 342 132 64 86 27 8 8 7 24 43 2 1 0
..................................................GTGGGTAGAACTTTGATT.......................................................................................... 18 0 1 545.00 545 10 13 6 6 325 47 93 7 2 12 23 1 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGT................................................. 24 1 1 530.00 530 105 100 63 39 13 4 83 69 13 0 0 26 9 6
..................................................GTGGGTAGAACTTTGATTAATAAAA................................................................................... 25 3 1 402.00 402 152 103 92 35 0 0 1 1 0 0 0 0 8 10
.....................................................................................TTAGTCAAAGATTTTCCCCAT.................................................... 21 0 1 375.00 375 53 37 106 71 1 3 8 11 0 29 27 26 3 0
..................................................GTGGGTAGAACTTTGATTAATAT..................................................................................... 23 0 1 236.00 236 85 78 17 10 9 19 4 3 1 2 4 2 1 1
.....................................................................................TTAGTCAAAGATTTTCCCCATAA.................................................. 23 1 1 229.00 229 17 34 102 63 0 0 0 5 0 0 0 2 5 1
.....................................................................................TTAGTCAAAGATTTTCCCCA..................................................... 20 0 1 217.00 217 3 5 8 2 46 6 5 1 38 67 36 0 0 0
..................................................GTGGGTAGAACTTTGATTA......................................................................................... 19 0 1 213.00 213 56 52 20 12 17 8 5 2 0 13 28 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAAA................................................. 24 2 1 186.00 186 34 28 66 49 0 0 1 5 0 0 0 0 3 0
.....................................................................................TTAGTCAAAGATTTTCCCC...................................................... 19 0 1 80.00 80 3 1 2 0 2 1 5 2 2 37 25 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCC....................................................... 18 0 1 79.00 79 0 1 0 1 1 1 2 0 0 39 34 0 0 0
...................................................TGGGTAGAACTTTGATTAAT....................................................................................... 20 0 1 65.00 65 7 5 7 3 29 3 0 7 4 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGAAA............................................... 26 2 1 58.00 58 18 11 17 9 0 0 1 2 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGTAA............................................... 26 3 1 57.00 57 6 3 26 20 0 0 0 1 0 0 0 0 1 0
......................................................................................TAGTCAAAGATTTTCCCCATAG.................................................. 22 0 1 56.00 56 0 0 0 0 0 0 1 50 0 2 3 0 0 0
..................................................GTGGGTAGAACTTTGATTAAA....................................................................................... 21 1 1 56.00 56 18 17 8 6 3 2 1 0 0 0 0 1 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGTA................................................ 25 2 1 51.00 51 9 6 22 12 0 0 0 1 0 0 0 1 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGAA................................................ 25 1 1 50.00 50 10 14 15 9 0 0 1 0 0 0 0 0 1 0
..................................................GTGGGTAGAACTTTGATTAATT...................................................................................... 22 1 1 49.00 49 12 10 2 3 8 11 0 2 0 0 0 1 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAAAA................................................ 25 3 1 42.00 42 14 12 12 4 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGTT................................................ 25 2 1 41.00 41 8 10 11 2 0 0 2 5 0 0 0 0 3 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGC................................................. 24 1 1 36.00 36 6 5 7 3 4 0 6 0 2 0 0 3 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATACA................................................. 24 2 1 28.00 28 1 2 9 15 0 0 1 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAC.................................................. 23 1 1 25.00 25 4 1 9 1 1 1 3 3 2 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTAATA...................................................................................... 21 0 1 24.00 24 5 4 1 1 5 1 0 1 6 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAC....................................................................................... 21 1 1 21.00 21 0 1 0 0 15 3 2 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATGG.................................................. 23 2 1 21.00 21 1 0 1 0 7 3 0 0 9 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCATAG.................................................. 24 0 1 20.00 20 8 1 2 5 0 0 1 0 1 0 0 0 2 0
.....................................................................................TTAGTCAAAGATTTTCCCCATACC................................................. 24 2 1 17.00 17 0 1 5 3 0 0 3 1 3 0 0 1 0 0
....................................................GGGTAGAACTTTGATTAAT....................................................................................... 19 0 1 16.00 16 0 0 1 0 12 2 1 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATATA.................................................................................... 24 1 1 15.00 15 7 4 4 0 0 0 0 0 0 0 0 0 0 0
....................................................GGGTAGAACTTTGATTAATA...................................................................................... 20 0 1 12.00 12 0 1 0 0 5 1 1 0 4 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAT.................................................. 23 1 1 10.00 10 2 2 2 1 0 0 0 1 0 0 0 1 1 0
..................................................GTGGGTAGAACTTTGATTAAAA...................................................................................... 22 2 1 10.00 10 4 3 2 0 0 0 0 0 0 0 0 0 1 0
....................................................................................ATTAGTCAAAGATTTTCCCCATA................................................... 23 0 1 10.00 10 2 5 1 0 0 0 0 0 0 1 0 0 1 0
....................................................................................ATTAGTCAAAGATTTTCCCCATAGA................................................. 25 0 1 9.00 9 2 4 1 0 0 0 0 2 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAG....................................................................................... 21 1 1 9.00 9 4 3 0 0 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTT......................................................................................... 19 1 1 8.00 8 0 1 0 0 5 1 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATC...................................................................................... 22 1 1 7.00 7 1 2 1 1 0 1 1 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAG..................................................................................... 23 1 1 7.00 7 4 1 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGAAAA.............................................. 27 3 1 7.00 7 1 3 1 0 0 0 0 1 0 0 0 0 1 0
..................................................GTGGGTAGAACTTTGA............................................................................................ 16 0 1 7.00 7 0 1 1 0 0 0 5 0 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCC...................................................... 20 0 1 7.00 7 0 0 0 0 2 1 1 2 0 1 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCAGAG.................................................. 23 3 1 6.00 6 1 1 0 0 0 0 0 4 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCAT.................................................... 22 0 1 6.00 6 2 1 1 0 0 0 1 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATATAA................................................................................... 25 2 1 6.00 6 1 2 2 1 0 0 0 0 0 0 0 0 0 0
......................................................................................TAGTCAAAGATTTTCCCCATA................................................... 21 0 1 6.00 6 1 0 0 0 0 0 1 3 0 1 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATACT................................................. 24 2 1 6.00 6 2 3 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATT................................................... 22 1 1 6.00 6 1 1 2 0 0 0 1 1 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCC........................................................ 17 0 1 6.00 6 2 0 1 1 0 0 2 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGTTT............................................... 26 3 1 6.00 6 0 0 3 0 0 0 0 0 0 0 0 0 3 0
..................................................GTGGGTAGAACTTTGATTAATAC..................................................................................... 23 1 1 6.00 6 1 2 0 0 0 0 0 0 3 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGTTA............................................... 26 3 1 5.00 5 0 1 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................GGTAGAACTTTGATTAAT....................................................................................... 18 0 1 5.00 5 0 0 0 0 2 0 3 0 0 0 0 0 0 0
...........................................................................................AAAGATTTTCCCCATAGT................................................. 18 1 1 5.00 5 0 0 0 0 0 0 5 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGG................................................. 24 1 1 5.00 5 0 1 0 1 2 0 1 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAGA...................................................................................... 22 2 1 5.00 5 4 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAAAGATTTTCCCCATAG.................................................. 18 0 1 4.00 4 0 0 0 0 0 0 4 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTTAT....................................................................................... 21 3 1 4.00 4 0 1 0 1 1 0 0 0 0 0 0 1 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCAAA................................................... 22 2 1 4.00 4 1 2 0 0 0 0 0 0 0 0 0 0 1 0
....................................................................................ATTAGTCAAAGATTTTCCCCA..................................................... 21 0 1 4.00 4 0 1 0 0 1 0 0 0 0 1 1 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATACCA................................................ 25 3 1 4.00 4 1 1 1 1 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATATAAA.................................................................................. 26 3 1 4.00 4 1 0 3 0 0 0 0 0 0 0 0 0 0 0
......................................................GTAGAACTTTGATTAATA...................................................................................... 18 0 1 4.00 4 0 1 0 0 1 0 0 0 2 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAAAC................................................................................... 25 3 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGAT........................................................................................... 17 0 1 4.00 4 0 1 0 0 0 0 3 0 0 0 0 0 0 0
......................................................................................TAGTCAAAGATTTTCCCCATAGA................................................. 23 0 1 4.00 4 0 1 2 0 0 0 0 1 0 0 0 0 0 0
......................................................GTAGAACTTTGATTAAT....................................................................................... 17 0 1 4.00 4 0 0 1 0 0 0 3 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATATT.................................................................................... 24 0 1 4.00 4 0 0 0 0 0 3 0 1 0 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTAA........................................................................................ 19 0 1 3.00 3 0 1 0 0 1 0 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTATTA...................................................................................... 22 3 1 3.00 3 2 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GTGGGTAGAACTTTGAAA.......................................................................................... 18 2 1 3.00 3 1 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTAATAAA.................................................................................... 23 2 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTG............................................................................................. 15 0 2 3.00 6 3 0 0 0 0 0 3 0 0 0 0 0 0 0
.........................................................................................TCAAAGATTTTCCCCATAG.................................................. 19 0 1 3.00 3 0 0 1 0 0 0 1 1 0 0 0 0 0 0
......................................................................................TAGTCAAAGATTTTCCCCATAGT................................................. 23 1 1 3.00 3 0 0 0 0 0 0 0 3 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCAAAG.................................................. 23 3 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AAAGATTTTCCCCATAG.................................................. 17 0 1 3.00 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTAATAA..................................................................................... 22 1 1 3.00 3 0 1 2 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAAT.................................................................................... 24 2 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGCA................................................ 25 2 1 3.00 3 0 1 1 1 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATC.......................................................................................... 18 1 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0 0
......................................................................................TAGTCAAAGATTTTCCCCA..................................................... 19 0 1 2.00 2 0 0 0 0 0 0 0 0 0 1 1 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCATAGT................................................. 25 1 1 2.00 2 0 0 0 0 0 0 1 0 0 0 0 0 1 0
......................................................................................TAGTCAAAGATTTTCCCCAT.................................................... 20 0 1 2.00 2 0 0 0 0 0 0 0 1 0 1 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAGA.................................................................................... 24 2 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATACAA................................................................................... 25 3 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATG...................................................................................... 22 1 1 2.00 2 0 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................GGTAGAACTTTGATTAATA...................................................................................... 19 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0
.......................................................TAGAACTTTGATTAATA...................................................................................... 17 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCC....................................................... 19 0 1 2.00 2 0 0 0 1 0 0 0 0 0 1 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATTA..................................................................................... 23 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATATA................................................. 24 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCATAA.................................................. 24 1 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAAG.................................................................................... 24 2 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATACA.................................................................................... 24 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GGGTAGAACTTTGATTAA........................................................................................ 18 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTTA........................................................................................ 20 2 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATATTGC.................................................................................. 26 0 1 2.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAACA...................................................................................... 22 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATATTGCT................................................................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATAAT........................................................................................ 20 3 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAAT...................................................................................... 22 2 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0 0 0
........................................................................................GTCAAAGATTTTCCCCATAGT................................................. 21 1 1 2.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGAGTT......................................................................................... 19 3 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTAATAT..................................................................................... 22 0 1 2.00 2 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAAAG..................................................................................... 23 3 1 2.00 2 0 0 0 0 0 0 0 0 0 0 0 0 2 0
.......................................................................................AGTCAAAGATTTTCCCCATAG.................................................. 21 0 1 2.00 2 0 0 0 0 0 0 0 1 0 0 1 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATCG.................................................. 23 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
...................................................TGGGTAGAACTTTGATTA......................................................................................... 18 0 1 2.00 2 0 0 0 0 1 0 0 0 0 0 1 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCAGA................................................... 22 2 1 2.00 2 1 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCG..................................................... 20 1 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0 0
..................................................GTGGGTAGAACTTTGAA........................................................................................... 17 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATA.......................................................................................... 18 1 1 2.00 2 0 0 0 0 1 0 1 0 0 0 0 0 0 0
..............................................................................................GATTTTCCCCATAGT................................................. 15 1 2 1.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0
........................................................AGAACTTTGATTAAT....................................................................................... 15 0 2 1.50 3 0 0 0 0 0 0 3 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATCA..................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCATAGTA................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGTCA............................................... 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAAT................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................CAAAGATTTTCCCCATAGT................................................. 19 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCG..................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
....................................................GGGTAGAACTTTGATTAATAA..................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTACTT...................................................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................AATTTTGGCAATGTACAAACGC..................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAC........................................................................................ 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATGT......................................................................................... 19 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGATT............................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCTTA................................................... 22 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..................................................GTGGGTAGAACTTTGATTAATATTG................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGCT................................................ 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GGGTAGAACTTTGATTAAC....................................................................................... 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCAA.................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAAAA..................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCA...................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCTT.................................................... 22 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCAAA...................................................... 19 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................AGAACTTTGATTAATA...................................................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATGGT................................................. 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATGCC.................................................................................... 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................TAGTCAAAGATTTTCCCCATAC.................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAAC.................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTTT........................................................................................ 20 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATCGA................................................. 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCATAAA................................................. 25 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAAAG................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAAGAA..................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCCT.................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
......AGCATTTGTCTCTTTGATAGTAAAGCC............................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGCAA............................................... 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................GTCAAAGATTTTCCCCATAG.................................................. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGTCG............................................... 26 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCAA....................................................... 18 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TATTAGTCAAAGATTTTCCCC...................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................AGTCAAAGATTTTCCCCA..................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................GTGGGTAGAACTTTGATTAATATCAA.................................................................................. 26 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCTAA................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................AGTCAAAGATTTTCCCCATAGA................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCAT..................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCACAG.................................................. 23 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................AAAGATTTTCCCCATA................................................... 16 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................TCCGGTGGTGGAGAAAGGA. 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.........................................................................................TCAAAGATTTTCCCCAT.................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCA....................................................... 18 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................GGCAATGTACAAACGCATCCGGT.............. 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATAA......................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATATTGCTTG............................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGATA............................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGTG................................................ 25 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATGTC................................................. 24 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGAAT............................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCAAAA.................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................TAGAACTTTGATTAAT....................................................................................... 16 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGAT................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAAAT................................................................................... 25 3 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................................................CAAACGCATCCGGTGGTGGAGAA..... 23 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATG................................................... 22 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................AGTCAAAGATTTTCCCCATA................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCATACA................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAAAC................................................ 25 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATAGAG................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATTT..................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGAAAA......................................................................................... 19 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTATA....................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAT........................................................................................ 20 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAGTA...................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATTAGTCAAAGATTTTCCCCATCG.................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................GTGGGTAGAACTTTGATTAATAGC.................................................................................... 24 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................GGGTAGAACTTTGATTAATAAA.................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCAA...................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCATA.................................................... 21 3 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................TTAGTCAAAGATTTTCCCCATGT.................................................. 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.........ATTTGTCTCTTTGAGG..................................................................................................................................... 16 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................TATTGCTTGAGAATA......................................................................... 15 0 4 0.25 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

CCGTCGTCGTAAACAGAGAAACTATCATTTCGGTGATTAGGTTTTCTTGCCACCCATCTTGAAACTAATTATAACGAACTCTTATAATCAGTTTCTAAAAGGGGTATCTAAATAGTTAAAACCGTTACATGTTTGCGTAGGCCACCACCTCTTTCCTG
**************************************************(((((.((((((((((((((((((.......)))))))))))))).)))).)))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
...........................AAGCGGTGATTAGGTT................................................................................................................... 16 3 2 0.50 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:22146720-22146877 - dsi_9960 GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTTGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGAC
droSec2 scaffold_13:1460515-1460672 - dse_25 GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAGGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGC
dm3 chr3R:22687021-22687179 - dme-mir-1012 GGCAGTAGCGTTTGTCTATTTGATAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--A-----AAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGC
droEre2 scaffold_4820:5353854-5354013 + der_32 GGTAGTAGCGTTTGTCTATTTGACAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAAATC-TTTGATTAGTATTGGTTTC--A-----ATA-------TATTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGATTTATCAATCTTGGCAATGTACAAACGCATCCGGTGGTGGAAAATGGGC
droYak3 3R:23804810-23804969 + dya_27 GGCAGCAGCGTTTGTCTATTTAATAACAAA--GCCACCAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGC--A-----AGA-------TATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCTGTGGTGGAGAATGGGC
droEug1 scf7180000409770:137887-138042 - GGGAGCAGCATTTGTCTGTATAGTCCCAAT--GCTACTAACTCTACAGAACGGTGGGTAAACT-TTTGACTTATATTGTT-----A-----AAA-------TATTAGTC----------------AA------A------------------------------------CTTTT-TCCCCCTAGATTTATCAATTTTGGAAATGTACAATCTCAGCCGGTGGTGGAGAACGGAC
droBia1 scf7180000302113:2951534-2951691 - GGCAGCAGCATTTGTCTGTATAATCCCAAG--GCGAGCAGCCCAAAGGAACGGTGGGTATTCA-TTTAACTAGTATAAATCGA--G-----TTA-------TATTAGTC----------------AA------A------------------------------------TGGAT-T-CCCATAGATTCATCAACTTCGGCAATGTGCAATCGCGCCCAGTGGTGGAGAGGGGGC
droTak1 scf7180000415286:732075-732233 - GGCAGCAGCATTTGTCTGTTTAATCCCAAG--GCCACCAACTCAAAAGAACGGTGGGTACTTACTTTGATTAATACTACTTGC--A-----AAA-------TATTAGTC----------------AA------AT-----------------------------G-----G--AT-T-CCCACAGATTTGTGAGCTTTGGCAATGTGCAATCGCGACCAGTGGTGGAGAACGGGC
droEle1 scf7180000491280:725140-725297 - GGTAGTAGCGTGTGTCTATTCAGTCCCAAA--GCCACGAACTTAAAAGAGCGGTGGGTAAAC--ATTGATTAATACTTTATGT--------GGA-------TGTTAGTC----------------AA------T------------------------------G-----GA-TTTCCTACTCAGATTTATAAATTTTGGCAACGTCCAGTCGCGTCCGGTGGTGGAGAACGGGC
droRho1 scf7180000779166:13443-13600 + GGTAGCAGCGTGTGTTTGTTTAATCCCAAA--GCCACAAATTTAAAAGAACGGTGGGTAAAC--ATTGATTAATATTTTATGC--------GGA-------TATTAGTC----------------AA------T------------------------------G-----G-TTTTTCCCATCAGATTTATCAATCTTGGCAATGTCCAGTCGCGTCCGGTGGTGGAAAATGGGC
droFic1 scf7180000454055:2583585-2583741 - GGCAGCAGCGTGTGTTTATTTAACCCAAAG--GAAACAAATTCAAAGAAACGGTGGGTGAGC--ATTGGTTAATACAGT-GGT--------GCA-------TATTAGTC----------------AA------T------------------------------G-----A-TATTCCCCACTAGATTTATCAATTTGGGAAATGTGCAATCGCGTCCATTGGTGGAGAACGGGC
droKik1 scf7180000297719:58301-58458 + GGCAGCAGCGTGTGTCTGTTCAATCCCAAA--GCCACGGATATGAAGCAGCGGTGAGTTTTAA-TTGGTTGTATATTG-------A-----AAT-------TGCTGATTATA-------------AA------G------------------------------G-----GT-TTCTCTTTATAGTTTCATCAATTTCGGAAATGTACAGTCGCGTCCGGTGGTCGAAAACGGGC
droAna3 scaffold_13340:16646722-16646878 + GGAAGTAGCATTTGTCTTTATGATCCAAAA--GAAAGCGATATAAAAAAGCGGTAGGTTTCAA-CCAAATT-----TCCTTTG--------AGA-------GTTCAGTT----------------AA--CTTTA------------------------------------TATAT-TCTTTTTAGCTTCACTAACTTCGGCAATAGTCAGTCACGACCGGTGGTTGAGAATGGAC
droBip1 scf7180000396424:162644-162805 + GGAAGTAGCATCTGCCTATTTGATCCAAAA--GAAACTGACTTTAAAAAACGGTAGGCATTAT-TTAAATTACTATGGGCTAC--------TAC-------TATTAGCT----------------TA--CTCCA------------------------------------TACTT-TCATTTCAGCTTCACCAACCTGGGTAACAGTCAGTCGCGACCGGTGGTTGAGAATGGAC
dp5 2:4781286-4781453 + GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGTCT-CTCA-TATATAG-------TTATAAAAGAACGAACACCAGTGGTT----------------A---AGCAA------------------------------------TGCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGAC
droPer2 scaffold_19:478273-478440 + GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGTCT-CTCA-TATATAG-------TTATAAAAGAACGAACACCAGTGGTA----------------A---AGCAA------------------------------------TGCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGAC
droWil2 scf2_1100000004943:2628973-2629129 + GGAAGCAGCATATGTCTATATTCCCCAAAG--GCCACCAATTTGTCAGAACGGTATGGT---------------AGTGCAAGA--A-----AGC-------CGA-AATTCAAAAACACCCTAATTGT----------------------------------------------AACAATTTGCAGATTTGTCAACTTTGGCACGGTCCAATCGAAGCCCGTTGTGGAAAACGGTC
droVir3 scaffold_13047:12018066-12018226 - GGCAGCAGCATTTGCTTGTATTCGCCCAAG--GTCAGCGATCTAAAGAAACGGTACGGATTGT--T-TATTTAAATGCTTT----------ATA-------TATTTATC----------------TATAAG--C------------------------------T---ATCT-TTTTGTTTGCAGTTTCATTAACTTTGGTAATGTACAGTCGAAGCCCGTCATTAAAGACGGCC
droMoj3 scaffold_6540:29763892-29764076 + GGGAGCAGCATTTGTCTTTTTTCCCCTAAA--GAGACCGATTTAAAAAAACGGTGTGTAAATA--TGGATTATTAT-------TTATAAATTATCGAAAACTTA-ACTTCTA-------------AT------G-----------------T-TTTTATATTTATATTTTCA-ACATACTCTCAGTTTCATCAACTTCGGCAATGTACAGACGCAACCCGTATATAAAAACGAGC
droGri2 scaffold_14624:2192612-2192820 - GGCAGCAGTATTTGTTTGTTG--TCGCCAGGCCAGATTGATATCAAGAAGCGGTACGTTCTACATTTGGTTGA-ACTATTCTT--------GAA-------CTTGAGCC-GAAAAAACTTTAGCTGTA-TTTTAAACATTCTTTTTCAATCTCTTTTGTGTGTGT-----GT-TTTTATTTGCAGTTTCATTAACTTTGGCAATGTACAAGCGCAGCCGGAAATCAAGGATGGCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTTGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis
....................................................GTGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................21113368.00133682536942178681226420531831125670290661057
....................................................GTGGGTAGAAC-TTTGATTAATA................................................................................................................................................................2219601.0096016533354424215838403066546259225138527
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................2318427.008427407912956662441609548372366190122710533141
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................2213904.0039047114538048107210818706133118115
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2412122.002122618182277906373832432203
....................................................GTGGGTAGAAC-TTTGATTAA..................................................................................................................................................................2011185.0011858627782443441342132648201
....................................................GTGGGTAGAAC-TTTGATT....................................................................................................................................................................181545.005453254727122310136693100
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................211375.0037513011292753371067182603
....................................................GTGGGTAGAAC-TTTGATTAATAT...............................................................................................................................................................231236.002369191324857817104211
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................201217.00217466381673635825000
....................................................GTGGGTAGAAC-TTTGATTA...................................................................................................................................................................191213.00213178021328565220125000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................19180.00802122372531205000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCC.......................................................18179.00791100393401012000
.....................................................TGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................20165.0065293470075730000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................22156.0056000502300001000
.....................................................TGGGTAGAAC-TTTGATTAATA................................................................................................................................................................21124.002451610054110000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................24120.002000100081251002
......................................................GGGTAGAAC-TTTGATTAAT.................................................................................................................................................................19116.0016122000000101000
......................................................GGGTAGAAC-TTTGATTAATA................................................................................................................................................................20112.001251400001001000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................23110.001000001025100001
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2519.00900020024100000
....................................................GTGGGTAGAAC-TTTGA......................................................................................................................................................................1617.00700000001105000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................2017.00721021000001000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................2216.00600010021101000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................2116.00600031010001000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCC........................................................1716.00600000020112000
.......................................................GGTAGAAC-TTTGATTAAT.................................................................................................................................................................1815.00520000000003000
............................................................................................................C----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................1814.00400000000004000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................2114.00410001101000000
........................................................GTAGAAC-TTTGATTAATA................................................................................................................................................................1814.00410200001000000
....................................................GTGGGTAGAAC-TTTGAT.....................................................................................................................................................................1714.00400000001003000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2314.00400010001200000
........................................................GTAGAAC-TTTGATTAAT.................................................................................................................................................................1714.00400000000103000
....................................................GTGGGTAGAAC-TTTGATTAATATT..............................................................................................................................................................2414.00403010000000000
.....................................................TGGGTAGAAC-TTTGATTAA..................................................................................................................................................................1913.00310010001000000
....................................................GTGGGTAGAAC-TTTG.......................................................................................................................................................................1523.00600000030003000
...........................................................................................................TC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................1913.00300010000101000
.............................................................................................................................AA------A------------------------------------GATTT-TCCCCATAG..................................................1713.00300000000003000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................1912.00200001100000000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................2012.00200011000000000
.......................................................GGTAGAAC-TTTGATTAATA................................................................................................................................................................1912.00210000000001000
.........................................................TAGAAC-TTTGATTAATA................................................................................................................................................................1712.00200000000002000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCC.......................................................1912.00200001000010000
......................................................GGGTAGAAC-TTTGATTAA..................................................................................................................................................................1812.00200000001001000
....................................................GTGGGTAGAAC-TTTGATTAATATTGC............................................................................................................................................................2612.00200000001100000
....................................................GTGGGTAGAAC-TTTGATTAATATTGCT...........................................................................................................................................................2712.00200000020000000
.....................................................TGGGTAGAAC-TTTGATTAATAT...............................................................................................................................................................2212.00200100010000000
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................2112.00200010100000000
.....................................................TGGGTAGAAC-TTTGATTA...................................................................................................................................................................1812.00210000100000000
..........................................................AGAAC-TTTGATTAAT.................................................................................................................................................................1521.50300000000003000
................................................................................................................................................................................................AATTTTGGCAATGTACAAACGC.....................2211.00101000000000000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATT...............................................2611.00100010000000000
....................................................GTGGGTAGAAC-TTTGATTAATATTG.............................................................................................................................................................2511.00100000001000000
..........................................................AGAAC-TTTGATTAATA................................................................................................................................................................1611.00100000000001000
......AGCATTTGTCTCTTTGATAGTAAA--GCC........................................................................................................................................................................................................2711.00100010000000000
..........................................................................................................GTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................2011.00100000000001000
.....................................................................................................TATTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................2111.00100010000000000
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................1811.00100000100000000
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2211.00100000000100000
.............................................................................................................................AA------A------------------------------------GATTT-TCCCCATA...................................................1611.00100000000001000
.......................................................................................................................................................................................................................TCCGGTGGTGGAGAAAGGA.1911.00100010000000000
...........................................................................................................TC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................1711.00100000010000000
......................................................................................................................................................................................................GGCAATGTACAAACGCATCCGGT..............2311.00100010000000000
....................................................GTGGGTAGAAC-TTTGATTAATATTGCTTG.........................................................................................................................................................2911.00100000001000000
.........................................................TAGAAC-TTTGATTAAT.................................................................................................................................................................1621.00200000000002000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAT................................................2511.00100000100000000
...............................................................................................................................................................................................................CAAACGCATCCGGTGGTGGAGAA.....2311.00100010000000000
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................2011.00100000001000000
.........................................................................TATTGCTTGA--------GAA-------TA....................................................................................................................................1540.25100000000001000
droSec2
GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAGGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................2313479.0034792709236174360
....................................................GTGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................2111946.00194636259156937
....................................................GTGGGTAGAAC-TTTGATTAATA................................................................................................................................................................221876.00876288219157212
....................................................GTGGGTAGAAC-TTTGATT....................................................................................................................................................................181375.003751603356
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................221262.00262174252340
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................221197.00197197000
....................................................GTGGGTAGAAC-TTTGATTAA..................................................................................................................................................................201155.001553846368
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................211101.001013291446
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................24167.006757226
....................................................GTGGGTAGAAC-TTTGATTA...................................................................................................................................................................19150.0050168323
.....................................................TGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................20130.003028101
.....................................................TGGGTAGAAC-TTTGATTAATA................................................................................................................................................................21127.002724012
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................21120.002020000
....................................................GTGGGTAGAAC-TTTGATTAATAT...............................................................................................................................................................23113.00132506
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................24110.00105302
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................2119.0099000
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................2219.0092214
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................2018.0082105
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGA.................................................2314.0044000
.....................................................TGGGTAGAAC-TTTGATTAA..................................................................................................................................................................1914.0044000
............................................................................................................C----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................1813.0032001
.......................................................GGTAGAAC-TTTGATTAAT.................................................................................................................................................................1813.0033000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................1913.0031020
......................................................................................................ATTAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................2012.0022000
......................................................GGGTAGAAC-TTTGATTAAT.................................................................................................................................................................1912.0022000
......................................................................................................................................................................................................................ATCCGGTGGTGGAGAAAGGGC2112.0020200
..........................................................................................................GTC----------------AA------A------------------------------------GATTT-TCCCCATA...................................................1911.0011000
.......................................................................................................TTAGTC----------------AA------A------------------------------------GATTT-TCCCCATAGAT................................................2511.0011000
........................................................................................................................................................................................................................CCGGTGGTGGAGAAAGGGC1911.0011000
........................AGTAAA--GCCACTAATCCAAAGG...........................................................................................................................................................................................2211.0011000
.........................GTAAA--GCCACTAATCCAAAGGA..........................................................................................................................................................................................2211.0011000
...........................................................................................................TC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................1911.0011000
......................................................GGGTAGAAC-TTTGATTAATAT...............................................................................................................................................................2111.0010001
..........................................................................................................GTC----------------AA------A------------------------------------GATTT-TCCCCATAG..................................................2011.0011000
.....................................................TGGGTAGAAC-TTTGATTA...................................................................................................................................................................1811.0011000
...........................................................GAAC-TTTGATTAATATTGCTTGA--------GAA-------T.....................................................................................................................................2711.0010100
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCC......................................................1811.0011000
...................................................GGTGGGTAGAAC-TTTGATTAATA................................................................................................................................................................2311.0011000
........................................................................................................TAGTC----------------AA------A------------------------------------GATTT-TCCCCAT....................................................2011.0011000
...........................................................................TTGCTTGA--------GAA-------TATTAGTC----------------AA------A------------------------------------GA...............................................................2411.0010100
....................................................GTGGGTAGAAC-TTTGATTAATATT..............................................................................................................................................................2411.0010100
.........................................................................................................AGTC----------------AA------A------------------------------------GATTT-TCCCCA.....................................................1811.0011000
droEre2
GGTAGTAGCGTTTGTCTATTTGACAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAAATC-TTTGATTAGTATTGGTTTC--A-----ATA-------TATTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGATTTATCAATCTTGGCAATGTACAAACGCATCCGGTGGTGGAAAATGGGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................24110687.00106878677189174963511200
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACT....................................................2212375.0023759276194131531127
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTA...................................................2311250.00125084433321469258
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................231672.0067266900003
....................................................GTGGGTAAATC-TTTGATTAGTA................................................................................................................................................................221558.0055858481081397
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGA.................................................251134.00134109501316
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACT....................................................21190.00908710002
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTA...................................................22169.00696800001
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCAC.....................................................21159.005935600315
....................................................GTGGGTAAATC-TTTGATTAGT.................................................................................................................................................................21138.003820201123
.........................................................................................................AGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................22136.00362901015
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCA......................................................20123.0023701159
......................................................................................................ATTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................25110.00101000000
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGA.................................................2417.007700000
..........................................................................................................GTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................2117.007600001
.....................................................TGGGTAAATC-TTTGATTAGTA................................................................................................................................................................2116.006600000
...........................................................................................................TC----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................2016.006500010
....................................................GTGGGTAAATC-TTTGATTAG..................................................................................................................................................................2016.006100005
.................................................................................................................................................................................................................AACGCATCCGGTGGTGGAAAATGGGC2616.006000051
.........................................................................................................AGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTA...................................................2115.005300002
.........................................................................................................AGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGA.................................................2315.005410000
.........................................................................................................AGTC----------------AA------A------------------------------T-----G-TTTTTCCCACT....................................................2015.005400001
............................................................................................................C----------------AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................1914.004300001
.............................................................................................................................AA------A------------------------------T-----G-TTTTTCCCACTAG..................................................1813.003300000
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCC.......................................................1913.003200001
................................................................................................................................................................................................................AAACGCATCCGGTGGTGGAAAATGGGC2713.003100020
....................................................................................................................................................................................................................GCATCCGGTGGTGGAAAATGGGC2313.003000012
...................................................................................................................................................................................................................CGCATCCGGTGGTGGAAAATGGGC2412.002001010
...............CTATTTGACAGTAAA--GCCACAA....................................................................................................................................................................................................2212.002000011
.GTAGTAGCGTTTGTCTATT.......................................................................................................................................................................................................................1912.002000020
....................................................GTGGGTAAATC-TTTGATT....................................................................................................................................................................1812.002100001
....................................................GTGGGTAAATC-TTTGATTA...................................................................................................................................................................1912.002100010
..................................................................................................................................................................................................................ACGCATCCGGTGGTGGAAAATG...2212.002000020
...AGTAGCGTTTGTCTATTTGACAGT................................................................................................................................................................................................................2411.001000010
...............................................................................................................................................................................................CAATCTTGGCAATGTACAAACGCATC..................2611.001010000
......................................................................................................ATTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACT....................................................2311.001100000
................................................................................................................................................................................................................AAACGCATCCGGTGGTGGAAAATG...2411.001000001
...............CTATTTGACAGTAAA--GCC........................................................................................................................................................................................................1811.001000001
......................................................GGGTAAATC-TTTGATTAGTA................................................................................................................................................................2011.001100000
.............................................................................................................................AA------A------------------------------T-----G-TTTTTCCCACTAGA.................................................1911.001100000
........................................................................................................TAGTC----------------AA------A------------------------------T-----G-TTTTTCCCAC.....................................................2011.001100000
..........................................................................................................................................................................................TTTATCAATCTTGGCAATGTAC...........................2211.001000010
..........................TAAA--GCCACAAATCCAAAAGAAC........................................................................................................................................................................................2311.001100000
....................................................................................................................................................................................................................GCATCCGGTGGTGGAAAATG...2011.001000010
.......................................................................................................TTAGTC----------------AA------A------------------------------T-----G-TTTTTCCCACTAGAT................................................2611.001100000
................................................................................................................................................................................................................AAACGCATCCGGTGGTGGAAA......2111.001000010
.....................................................TGGGTAAATC-TTTGATTAGTAT...............................................................................................................................................................2211.001000001
.................................................................................................................................................................................................................AACGCATCCGGTGGTGGAAAATGGG.2511.001000010
..................................................................................................................................................................................................................ACGCATCCGGTGGTGGAAAATGGGC2511.001000010
......................................................................................................................................................................................................................ATCCGGTGGTGGAAAATGGGC2111.001100000
...............CTATTTGACAGTAAA--GCCACA.....................................................................................................................................................................................................2111.001000001
............................................................................................................C----------------AA------A------------------------------T-----G-TTTTTCCCACTA...................................................1811.001100000
droYak3
GGCAGCAGCGTTTGTCTATTTAATAACAAA--GCCACCAATCCAAAAGAACGGTGGGTAGAAC-TTTGATTAATATTGCTTGC--A-----AGA-------TATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCTGTGGTGGAGAATGGGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body
....................................................GTGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................2111159.00115952322813120243140
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................241989.00989427086642011417
....................................................GTGGGTAGAAC-TTTGATTAATA................................................................................................................................................................221571.00571104330152602076
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................231202.0020201591180204
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCA.....................................................211161.001610146220101
....................................................GTGGGTAGAAC-TTTGATT....................................................................................................................................................................181100.001004314100420
....................................................GTGGGTAGAAC-TTTGATTAA..................................................................................................................................................................20166.00661325000235
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................23164.006406400000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCAT....................................................22162.006214570081
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCC......................................................20148.0048030170010
....................................................GTGGGTAGAAC-TTTGATTA...................................................................................................................................................................19133.0033412000125
.....................................................TGGGTAGAAC-TTTGATTAATA................................................................................................................................................................21128.002822600000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGA.................................................25127.002702151000
.....................................................TGGGTAGAAC-TTTGATTAAT.................................................................................................................................................................20121.002131700001
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................22121.002102100000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCA.....................................................20113.001301300000
......................................................GGGTAGAAC-TTTGATTAAT.................................................................................................................................................................1917.0073400000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCCC.......................................................1915.0050410000
.........................................................................................................AGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................2215.0050500000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCAT....................................................2115.0050500000
.....................................................................................................................................................................................................................CATCCTGTGGTGGAGAATGGGC2214.0040200002
......................................................................................................ATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................2513.0030300000
......................................................GGGTAGAAC-TTTGATTAATA................................................................................................................................................................2013.0030300000
...................................................................................................................................................................................................................CGCATCCTGTGGTGGAGAATGGGC2413.0030000003
......................................................................................................ATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................2412.0020100010
..............................................................................................................................................................................................................ACAAACGCATCCTGTGGTGGAGAATGGGC2912.0020000002
.....................................................TGGGTAGAAC-TTTGATTAA..................................................................................................................................................................1912.0020200000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGA.................................................2412.0020200000
.............................................................................................................................AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................1812.0020200000
........................................................................................................TAGTC----------------AA------A------------------------------G-----G-TTTTTCCCC......................................................1912.0020200000
.......................................................GGTAGAAC-TTTGATTAAT.................................................................................................................................................................1812.0022000000
.........................................................................................................AGTC----------------AA------A------------------------------G-----G-TTTTTCCCCAT....................................................2012.0020200000
...............................................................................................................................................................................................................CAAACGCATCCTGTGGTGGAGA......2212.0020100001
............................................................................................................C----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................1811.0010100000
.......................................................GGTAGAAC-TTTGATTAATA................................................................................................................................................................1911.0010100000
............................................................................................GA-------TATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCA.....................................................2511.0010100000
....................................................GTGGGTAGAAC-TTTGATTAATATT..............................................................................................................................................................2411.0010100000
.........................................................................................................AGTC----------------AA------A------------------------------G-----G-TTTTTCCCCATA...................................................2111.0010100000
.....................................................TGGGTAGAAC-TTTGATTA...................................................................................................................................................................1811.0010100000
......................................................................................................................................................................................................................ATCCTGTGGTGGAGAATGGGC2111.0010000001
............................................................................................................C----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................1911.0010100000
...AGCAGCGTTTGTCTATTTAATAACA...............................................................................................................................................................................................................2511.0010000001
...........................................................................................................................................................................................TTATCAATTTCGGCAATGTACAAAC.......................2511.0011000000
..................................................................................................................................................................................................................ACGCATCCTGTGGTGGAGA......1911.0010000001
...........................................................................TTGCTTGC--A-----AGA-------TATTAGTC----------------A.............................................................................................................2111.0010100000
..................................................................................................................................................................................................................ACGCATCCTGTGGTGGAGAATG...2211.0010000001
.................................................................................................................................................................................................................AACGCATCCTGTGGTGGAGA......2011.0010000001
.........................................................................................................................................................................................................AATGTACAAACGCATCCTGTGGTGGAGA......2811.0010000001
.......................TAACAAA--GCCACCAATCCA...............................................................................................................................................................................................1911.0010100000
..................TTTAATAACAAA--GCCACCAATCC................................................................................................................................................................................................2311.0010100000
........................................................................................................................................................................................GATTTATCAATTTCGGCAATG..............................2111.0011000000
..........................................................................................................GTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAGA.................................................2211.0010100000
...........................................................................................................TC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................2011.0010100000
...AGCAGCGTTTGTCTATTTAATAAC................................................................................................................................................................................................................2411.0010000001
......................................................................................................ATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCC......................................................2111.0010100000
.............GTCTATTTAATAACAAA--GCCACCAATCC................................................................................................................................................................................................2811.0010100000
......AGCGTTTGTCTATTTAATAACAAA--GC.........................................................................................................................................................................................................2611.0010100000
............................................................................................................................................................................................................GTACAAACGCATCCTGTGGTGGAG.......2411.0010010000
................................................................................................................................................................................................................AAACGCATCCTGTGGTGGAGAATGGGC2711.0010000001
..................................................................................C--A-----AGA-------TATTAGTC----------------AA------A------------------------------G-----G-TTTTT..........................................................2311.0010100000
..........................................................................................................GTC----------------AA------A------------------------------G-----G-TTTTTCCCCATAG..................................................2111.0010100000
............TGTCTATTTAATAACAAA--GC.........................................................................................................................................................................................................2011.0010100000
.......................................................................................................TTAGTC----------------AA------A------------------------------G-----G-TTTTTCC........................................................1811.0010010000
.........................................................................................................................................................................................................................CTGTGGTGGAGAATGGGC1811.0010000001
......................................................................................................ATTAGTC----------------AA------A------------------------------G-----G-TTTTTCCCCAT....................................................2311.0010100000
.............................................................................................................................................................................................ATCAATTTCGGCAATGTACAAACG......................2411.0010100000
............................................................................TGCTTGC--A-----AGA-------TATTAGTC----------------AA------A------------------------------G-----G-TT.............................................................2611.0010100000
...............................................................................................................................................................................................................CAAACGCATCCTGTGGTGGAGAATGGGC2811.0010000001
............TGTCTATTTAATAACAAA--GCCACC.....................................................................................................................................................................................................2411.0010100000
..................................................................................................................................................................................................................ACGCATCCTGTGGTGGAGAATGGGC2511.0010000001
droEug1
GGGAGCAGCATTTGTCTGTATAGTCCCAAT--GCTACTAACTCTACAGAACGGTGGGTAAACT-TTTGACTTATATTGTT-----A-----AAA-------TATTAGTC----------------AA------A------------------------------------CTTTT-TCCCCCTAGATTTATCAATTTTGGAAATGTACAATCTCAGCCGGTGGTGGAGAACGGACSizeHit CountTotal NormTotal
No Reads
droBia1
GGCAGCAGCATTTGTCTGTATAATCCCAAG--GCGAGCAGCCCAAAGGAACGGTGGGTATTCA-TTTAACTAGTATAAATCGA--G-----TTA-------TATTAGTC----------------AA------A------------------------------------TGGAT-T-CCCATAGATTCATCAACTTCGGCAATGTGCAATCGCGCCCAGTGGTGGAGAGGGGGCSizeHit CountTotal NormTotal
No Reads
droTak1
GGCAGCAGCATTTGTCTGTTTAATCCCAAG--GCCACCAACTCAAAAGAACGGTGGGTACTTACTTTGATTAATACTACTTGC--A-----AAA-------TATTAGTC----------------AA------AT-----------------------------G-----G--AT-T-CCCACAGATTTGTGAGCTTTGGCAATGTGCAATCGCGACCAGTGGTGGAGAACGGGCSizeHit CountTotal NormTotal
No Reads
droEle1
GGTAGTAGCGTGTGTCTATTCAGTCCCAAA--GCCACGAACTTAAAAGAGCGGTGGGTAAAC--ATTGATTAATACTTTATGT--------GGA-------TGTTAGTC----------------AA------T------------------------------G-----GA-TTTCCTACTCAGATTTATAAATTTTGGCAACGTCCAGTCGCGTCCGGTGGTGGAGAACGGGCSizeHit CountTotal NormTotal
No Reads
droRho1
GGTAGCAGCGTGTGTTTGTTTAATCCCAAA--GCCACAAATTTAAAAGAACGGTGGGTAAAC--ATTGATTAATATTTTATGC--------GGA-------TATTAGTC----------------AA------T------------------------------G-----G-TTTTTCCCATCAGATTTATCAATCTTGGCAATGTCCAGTCGCGTCCGGTGGTGGAAAATGGGCSizeHit CountTotal NormTotal
No Reads
droFic1
GGCAGCAGCGTGTGTTTATTTAACCCAAAG--GAAACAAATTCAAAGAAACGGTGGGTGAGC--ATTGGTTAATACAGT-GGT--------GCA-------TATTAGTC----------------AA------T------------------------------G-----A-TATTCCCCACTAGATTTATCAATTTGGGAAATGTGCAATCGCGTCCATTGGTGGAGAACGGGCSizeHit CountTotal NormTotal
No Reads
droKik1
GGCAGCAGCGTGTGTCTGTTCAATCCCAAA--GCCACGGATATGAAGCAGCGGTGAGTTTTAA-TTGGTTGTATATTG-------A-----AAT-------TGCTGATTATA-------------AA------G------------------------------G-----GT-TTCTCTTTATAGTTTCATCAATTTCGGAAATGTACAGTCGCGTCCGGTGGTCGAAAACGGGCSizeHit CountTotal NormTotal
No Reads
droAna3
GGAAGTAGCATTTGTCTTTATGATCCAAAA--GAAAGCGATATAAAAAAGCGGTAGGTTTCAA-CCAAATT-----TCCTTTG--------AGA-------GTTCAGTT----------------AA--CTTTA------------------------------------TATAT-TCTTTTTAGCTTCACTAACTTCGGCAATAGTCAGTCACGACCGGTGGTTGAGAATGGACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................CACGACCGGTGGTTGAGAAT....2012.002100010
.................................................................................................................................................................................................................GTCACGACCGGTGGTTGAGA......2011.001000010
................................................................................................................................................................................................................AGTCACGACCGGTGGTTGA........1911.001100000
....................................................................................................................................................................................................................ACGACCGGTGGTTGAGAATGGA.2211.001100000
droBip1
GGAAGTAGCATCTGCCTATTTGATCCAAAA--GAAACTGACTTTAAAAAACGGTAGGCATTAT-TTAAATTACTATGGGCTAC--------TAC-------TATTAGCT----------------TA--CTCCA------------------------------------TACTT-TCATTTCAGCTTCACCAACCTGGGTAACAGTCAGTCGCGACCGGTGGTTGAGAATGGACSizeHit CountTotal NormTotal
No Reads
dp5
GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGTCT-CTCA-TATATAG-------TTATAAAAGAACGAACACCAGTGGTT----------------A---AGCAA------------------------------------TGCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........ATGCCTCTACTCTCCCAAG--GC.........................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................CATCAATTTCGGAACTGTGCA..........................2111.0010100000000
..............................................................................................................................................................................................................GCAGTCGCATCCCGTGGTGGA........2111.0010100000000
...............................................................................................................................................................................................................CAGTCGCATCCCGTGGTGGAGA......2211.0010100000000
.............GCCTCTACTCTCCCAAG--GCCACAA....................................................................................................................................................................................................2411.0010100000000
..........................................................................................................................................................................................................CTGTGCAGTCGCATCCCGTGGTGGA........2511.0010100000000
..........................................................................................................................................................................................................CTGTGCAGTCGCATCCCGTG.............2011.0010100000000
.........................................................................................................................................................................................................ACTGTGCAGTCGCATCCCGTGGTGGA........2611.0010000100000
droPer2
GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGTCT-CTCA-TATATAG-------TTATAAAAGAACGAACACCAGTGGTA----------------A---AGCAA------------------------------------TGCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................AGTCGCATCCCGTGGTGG.........1812.002020000
............................................................................................................................................................................................................GTGCAGTCGCATCCCGTGGTGGAGA......2511.001010000
.............GCCTCTACTCTCCCAAG--GC.........................................................................................................................................................................................................1911.001010000
..........................................................................................................................................................................................................CTGTGCAGTCGCATCCCGTGGTGG.........2411.001010000
..............................................................................................................................................................................................................GCAGTCGCATCCCGTGGTGGA........2111.001010000
droWil2
GGAAGCAGCATATGTCTATATTCCCCAAAG--GCCACCAATTTGTCAGAACGGTATGGT---------------AGTGCAAGA--A-----AGC-------CGA-AATTCAAAAACACCCTAATTGT----------------------------------------------AACAATTTGCAGATTTGTCAACTTTGGCACGGTCCAATCGAAGCCCGTTGTGGAAAACGGTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................ATTTGTCAACTTTGGCACGGTCCA..........................2411.00101000
.......................................................................................................................................................................................................GCACGGTCCAATCGAAGCC.................1911.00110000
............................................................................................................................................................................................................GTCCAATCGAAGCCCGTTGTGGAAAAC....2711.00100100
...........................................................................................................................................................................................................GGTCCAATCGAAGCCCGTTGTGGA........2411.00100100
............TGTCTATATTCCCCAAAG--GCCACCA....................................................................................................................................................................................................2511.00101000
...........................................................................................................................................................................................................GGTCCAATCGAAGCCCGTT.............1911.00100100
droVir3
GGCAGCAGCATTTGCTTGTATTCGCCCAAG--GTCAGCGATCTAAAGAAACGGTACGGATTGT--T-TATTTAAATGCTTT----------ATA-------TATTTATC----------------TATAAG--C------------------------------T---ATCT-TTTTGTTTGCAGTTTCATTAACTTTGGTAATGTACAGTCGAAGCCCGTCATTAAAGACGGCCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body
..................................CAGCGATCTAAAGAAACG.......................................................................................................................................................................................1818.00870000000000000000000000000010000000000000000000000000000000000
................................GTCAGCGATCTAAAGAAACG.......................................................................................................................................................................................2014.00440000000000000000000000000000000000000000000000000000000000000
.................................TCAGCGATCTAAAGAAACG.......................................................................................................................................................................................1913.00330000000000000000000000000000000000000000000000000000000000000
................TGTATTCGCCCAAG--GTCAGCGATCTA...............................................................................................................................................................................................2611.00100000000000000000000000000000000100000000000000000000000000000
....................................................................................................................................................................................................................GAAGCCCGTCATTAAAGAC....1911.00100100000000000000000000000000000000000000000000000000000000000
................................GTCAGCGATCTAAAGAAAC........................................................................................................................................................................................1911.00110000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTTGGTAATGTACAGTCGAAGCC.................2311.00100000000000000000000000000000000000001000000000000000000000000
.................................TCAGCGATCTAAAGAAAC........................................................................................................................................................................................1811.00110000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................GTCGAAGCCCGTCATTAAAGACGGCC2611.00110000000000000000000000000000000000000000000000000000000000000
............TGCTTGTATTCGCCCAAG--GTCAGC.....................................................................................................................................................................................................2411.00100000000000000100000000000000000000000000000000000000000000000
....................TTCGCCCAAG--GTCAGCGAT..................................................................................................................................................................................................1911.00100100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................TTAACTTTGGTAATGTACAGT........................2111.00100100000000000000000000000000000000000000000000000000000000000
...........TTGCTTGTATTCGCCCAAG--GTCAGC.....................................................................................................................................................................................................2511.00100000000000000000000000000000000000010000000000000000000000000
.............GCTTGTATTCGCCCAAG--GTCAGCGATC.................................................................................................................................................................................................2711.00100100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................TGTACAGTCGAAGCCCGT..............1811.00100000000000000000000000000000000000000000000000000000000000100
....................................................................................................................................................................................................TTGGTAATGTACAGTCGAAGCCCGTCA............2711.00100000000000000000000000010000000000000000000000000000000000000
................................................................................................................................................................................................................AGTCGAAGCCCGTCATTAAA.......2011.00100000000000000010000000000000000000000000000000000000000000000
......................CGCCCAAG--GTCAGCGATCTAAAG............................................................................................................................................................................................2311.00100000000000000000000000000000100000000000000000000000000000000
..............CTTGTATTCGCCCAAG--GTCAGCGAT..................................................................................................................................................................................................2511.00100000000000000000100000000000000000000000000000000000000000000
droMoj3
GGGAGCAGCATTTGTCTTTTTTCCCCTAAA--GAGACCGATTTAAAAAAACGGTGTGTAAATA--TGGATTATTAT-------TTATAAATTATCGAAAACTTA-ACTTCTA-------------AT------G-----------------T-TTTTATATTTATATTTTCA-ACATACTCTCAGTTTCATCAACTTCGGCAATGTACAGACGCAACCCGTATATAAAAACGAGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
................................GAGACCGATTTAAAAAAAC........................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................TTCATCAACTTCGGCAATGTACA..........................2311.001100000
.........................CTAAA--GAGACCGATTTAAAA............................................................................................................................................................................................2011.001100000
........................................................................................................................................................................................GTTTCATCAACTTCGGCAATGT.............................2211.001100000
................TTTTTTCCCCTAAA--GAGACCGAT..................................................................................................................................................................................................2311.001100000
...............CTTTTTTCCCCTAAA--GAGACC.....................................................................................................................................................................................................2111.001100000
droGri2
GGCAGCAGTATTTGTTTGTTG--TCGCCAGGCCAGATTGATATCAAGAAGCGGTACGTTCTACATTTGGTTGA-ACTATTCTT--------GAA-------CTTGAGCC-GAAAAAACTTTAGCTGTA-TTTTAAACATTCTTTTTCAATCTCTTTTGTGTGTGT-----GT-TTTTATTTGCAGTTTCATTAACTTTGGCAATGTACAAGCGCAGCCGGAAATCAAGGATGGCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 10/12/2014 at 11:45 AM