ID:

dsi_9942

 Coordinate:

x:2184551-2184700 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-10.0 -10.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(TG)nSimple_repeatSimple_repeat+

Sense Strand Reads

ACCACCACACAAACACGAATAAACCACCCACACAAATACACACACATAAACACACGAACACACACATGCACCCATGCACTTGTGAATTGTCGCTGAATTGTGATCGTTCCGCCGACCATCCTTGTCCACCTTGTCGACCTGTCGCCTTCTTTCAATGTGCGTGTGTATCTGGTGTCCTGTTGACGGTTTGGCGGTATCAGCGGCTACCCCGCCACCCAACAGCCCCATCTACCTGCCGCCGCAATTGCCA
****************************************************************************************************************************************.....(((((..((.(((((((((....))))..........))))).))...)))))..****************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
.........................................................................................................................................................................................GCTTGGCGGAATCAGCGG............................................... 18 2 4 1.75 7 4 0 0 3 0 0
...........................................................................................................................................................................................TTGGCGGAATCAGCGG............................................... 16 1 4 1.25 5 4 0 0 1 0 0
........................................................................................................................................................................................GGCTTGGCGGAATCAGCGG............................................... 19 2 1 1.00 1 0 0 1 0 0 0
.................................................................................................................GACCATCCTTGTCCACCTTGTCGACCTGG............................................................................................................ 29 1 1 1.00 1 0 0 0 0 1 0
............................................................................................................................................................................TGTCCTGTTGACGGTTTGGCGGTA...................................................... 24 0 1 1.00 1 0 1 0 0 0 0
........................................................................................................................................ACCTGTCGCCTTCTTTCAATGT............................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0
......................................................................................................................TCCTTGTCCACCTTGTCGACCTGTCGCC........................................................................................................ 28 0 1 1.00 1 0 0 0 0 0 1
.......................................................................................................................................................................................GGGTTTGGCGGCATCAGCGG............................................... 20 2 1 1.00 1 0 1 0 0 0 0
............................................................................................................................................................................................TGGCGGAATCAGCGG............................................... 15 1 16 0.63 10 6 0 0 4 0 0
.......................................................................................................................................................................................GGGCTTGGCGGAATCAGCGG............................................... 20 3 13 0.31 4 4 0 0 0 0 0
........................................................................................................................................................................................GGCTTGGCGGAATCAGCG................................................ 18 2 4 0.25 1 0 0 0 1 0 0

Anti-sense strand reads

TGGTGGTGTGTTTGTGCTTATTTGGTGGGTGTGTTTATGTGTGTGTATTTGTGTGCTTGTGTGTGTACGTGGGTACGTGAACACTTAACAGCGACTTAACACTAGCAAGGCGGCTGGTAGGAACAGGTGGAACAGCTGGACAGCGGAAGAAAGTTACACGCACACATAGACCACAGGACAACTGCCAAACCGCCATAGTCGCCGATGGGGCGGTGGGTTGTCGGGGTAGATGGACGGCGGCGTTAACGGT
******************************************************.....(((((..((.(((((((((....))))..........))))).))...)))))..**************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR1275487
Male larvae
...............................................................................................................................................CGGAAGAAAGTTACA............................................................................................ 15 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................GGCTACGTGGACACTTAAC................................................................................................................................................................. 19 2 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................CCCTAGCTTGGCGGCTGGTAG.................................................................................................................................. 21 3 15 0.33 5 0 4 0 0 1 0 0
................................................................................................................................................................................................................................GGAAGATGGACGGCGACGTT...... 20 2 3 0.33 1 0 0 1 0 0 0 0
......................................................................................................................................GCTGGTCAGCGGAAG..................................................................................................... 15 1 6 0.17 1 1 0 0 0 0 0 0
......................................................................................................................................................................................TGAGAACCCGCCATAGTCG................................................. 19 3 13 0.15 2 1 0 0 0 0 1 0
.................................................................................................................CTGGCAGGAACAGGTGGT....................................................................................................................... 18 2 8 0.13 1 0 0 0 1 0 0 0
........................................................................................................................................TGGACAGCTGAACAAAGTAA.............................................................................................. 20 3 10 0.10 1 0 0 0 0 1 0 0
...................ATTTGGTGGCTGTGT........................................................................................................................................................................................................................ 15 1 11 0.09 1 0 0 0 1 0 0 0
...........................................................................................................................CAAGTGGAACATCTGGAC............................................................................................................. 18 2 11 0.09 1 0 1 0 0 0 0 0
..................................................................................................................................TACTGCTGGTCAGCGGAAG..................................................................................................... 19 3 12 0.08 1 1 0 0 0 0 0 0
....................................................................................................CCTAGCTTGGCGGCTGGTAG.................................................................................................................................. 20 3 16 0.06 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................GTAGGGGTAGATGGA................ 15 1 16 0.06 1 1 0 0 0 0 0 0
......................................................................................................................................................................................TGAGAACCCGCCATAGTC.................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0
..................TACTTGGTGGTTGTGTT....................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 1
..................................................................................................................................TACTGCTGGTCAGCGGAA...................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................CCCTAGCTTGGCGGCTGGTA................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:2184501-2184750 - dsi_9942 ACCACCACA---CAAACAC-------------------GAATAAA-------CCAC-----CCACACAAATACACACACATAAACACA--------------------------------------------------------------------------CGAACACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCACCT-------------TGTCGACCTGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------TGTGTATCTGGTGTCCTGTT--------------------------------------------------------------GACGGT--------------------T-----TG-------------GCGGTAT------------------CAGCGGCTACC---CCGCCACCCAACAGCCCCA-TCTACCTGCCGCC---G---------------------CAATT---GCCA
droSec2 scaffold_10:2142612-2142860 - ACCACCACA---CAAACAC-------------------GAA-AAA-------CCAC-----CCACACAAATACACACACATAAACACA--------------------------------------------------------------------------CGAACACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCACCT-------------TGTCGACCTGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------TGTGTATCTGGTGTCCTGTT--------------------------------------------------------------GACGGT--------------------T-----TG-------------GCGGTAT------------------CAGCGGCTACC---CCGCCACCCAACAGCCCCA-TCTACCTGCCGCC---G---------------------CAGTT---GCCA
dm3 chrX:2370013-2370278 - ACCAACACA---CAAACAC-------------------GAATAAA-------CCAC-----CCACACAAATACACACACATAAACACA-------------------------------------------------------CG-----------------AACACAC-CACA-------------------------------------------------------------------TGCACCCATGCGCA---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCACCT-------------TGTCGACCTGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------TGTGTATCTGGTGTCCTATT--------------------------------------------------------------GACGATT----GACG---GCTGATGGT-----TG-------------GCGATAT------------------CAGCGGCTACC---CCGCCACCCAACAGCCCCA-TCTACCTGCCACC---G---------------------CAATT---GCCA
droEre2 scaffold_4644:2319581-2319824 - der_337 ACTACCACA---CAAACAC-------------------GGATAAA-------CCAC-----CCACACAAATACAC--ACATAAAC-----------------------------------------------------A----CA-----------------CACGAACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCTCC-------------------ACTTGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------TGTGTAACTGGTGTCCTGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------CAGCGGCTACC---CCGCCACCCAACAGCCCCA-TCTACCTCCCGCCGCCG---------------------CAGTT---GCCA
droYak3 X:5975522-5975784 + ACTACCACA---CAAACAC-------------------GGATAAACCAA--ACCAC-----TCACACAATTACAC--ACATAAACA----------------------------------------------------------------------------CACGAACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCTCCACCCTGTCGTCGACTGTCGACCTGTCGCC-T----------------CCTTTCA--ATGTGC-------G---------------TCTGTATCTGGTGTCCTGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------CAGCGGCCACC---CCGCCACCCAACAGCCCCA-TCTACCTGCCGCC---G---------------------CAATT---ACCA
droEug1 scf7180000409277:55342-55585 - ACCA---CA---CAAATACAC---ACAAACACAAATACAAATACA-------CCAC-----CCAAACATCTACACATAT-----------------------------------------------------ACACACAC--ACA-----------------CACAAACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGAACGTT----CC--GCC----------CATC----------------------------CTTGTCGTCCT-------------TGTCGACCTGTCGCCCC----------------CCTTTCA--ATGTGT-------GT--------------TGTG------AT----------------------------------------------------------------------TGTGAT--------------------T-----GG-------------GCGGAAT------------------CAGCGGCGACC---CCGCCCCCCAA------CA-TCTACCTGACGCC---A---------------------CAATT---ACCA
droBia1 scf7180000301760:4796350-4796615 + AC----ACA---CAAACAC-------------------AAATACA-------CCAC-----CCACACACACATAC--ACATAATT----------------------------------------------------------------------------------ACACATA-------------------------------------------------------------------CGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCGTCCT-------------TGTCGACCCGTTGAC-CTG-TCGCGCTGTCGCCCCTTTCA--ATGTGT-------G---------------TGTGTACCGGATATCCTGTT--------------------------------------------------------------GGCGGT--------------------T-----GG----GCGGTATCAGCGGTAT------------------CAGTGGCCACT---CCGCCCC----------CACTCTACCTGCCGCC---AGTGCCAAC---AGCGCCC---CCCTC---TACA
droTak1 scf7180000415151:437868-438120 + AC-A---CA---CAAAC---C---ACACACACAAATACAAATACA-------CCAC-----CCACACACATACACATACTTAAAC-----------------------------------------------------AC--ACA-----------------CATAAACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGAACGT--------------------------------------------------------------CCT-------------TGTCGACCTGTCGCCCC----------------CGTTTCA--ATGTGT-------G---------------TGTGTATCCGATGTCCTGTT--------------------------------------------------------------GGCGGT--------------------T-----GG----GCCTTATCAGCGGTAC------------------CAGCGG------------CTCCCCAGAACCCCA-TCTACCTGCCGCC---AGTGG---------CGCCA---CCACGTTCGCCC
droEle1 scf7180000491011:684778-685059 - ACTA---CACTACACAC-----------ACACAAACACAATTACA-------CCACCACACACACACACACTCACATAT-----------------------------------------------------CTACACAC--ACA-----------------TATATACACACA-------------------------------------------------------------------TGCACCCATGC--A---CCTGTGAATTGTCGCTGA-ATTGTGAATGTT----CC--GCCGAA-------CATC----------------------------CTTGTCGTCCT-------------TGTCGACCTGTCGCC------------------CCTGTCA--ATGTGT-------G---------------TGTGTATCTGGTGTCCTGTC--------------------------------------------------------------GACTGT--------------------T-----GG-------------GCGGTAT------------------CAGCGGCGACC---CCGCCCCCCTACAGCCCCG-CCTACCTGCCGCC---GGTGCCCAC---GGCGCCCCCACACTT---ACCG
droRho1 scf7180000779506:476536-476808 - ACTA---CACTACACACAC---------ACAC------AAACACA-------C--------------ACACTCACATACCTACAC--ACACACAC-------TCAC----------------------ATATCTACACACACACACACAAC-----------CATATACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGAACGT--------------------------------------------------------------CCT-------------TGTCGACCTGTCGCC------------------CCTGTCA--ATGTGT-------G---------------TGTGTACCTGGTATCCTGTC--------------------------------------------------------------GTCGGT--------------------T-----TG-------------GCGGTAT------------------CAGCGGCGAGC---CCGCCCCCCTACAGACCCG-CCTACCTGCCGCC---GGTGGCCAC---CGCGCCCCCGCAATT---ACCA
droFic1 scf7180000453927:170686-170950 - AA-ACCACA---C--ACAC-------------------AAATACT-------CCAC-----CCACACAC-TACACATAT-----------------------------------------------------CTACACAC--TCACACAAA-----------CATAAAAACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGAACGTT----CC--GCCGAA-------CATC----------------------------CTTGTCGTCCT-------------TGTCGACCTGTCGCC-C----------------CCTGTCA--ATGTGT-------ATC-------------TGTGTATCTGGTGTCCCGTT-------------------------------------------------------------TGGCTGTG-----------GCTG-TGTT-----GG-------------GCGATAT------------------CAGCGGCGACC---CCGCCCCCCTACAACCCCG-CCTACCTGCCGCC---G---------------------CCGTT---GCCA
droKik1 scf7180000302258:508015-508272 - ACTA---CA---AAAACACAC--------TAC------AAACA---------------------CACAC-TATACACAC-------------------------------------------ACC-------CTACACAC--CCACAT--------ACGCCACACATATATACA-------------------------------------------------------------------TGCACC-TTGC--A---CTTGTAAATTGTCGCTGA-ATTGTGAACGTT----CC--GCCGAC-------CATC----------------------------CTT--CGTCCT-------------T--CGT-CCGTTGCC-G----------------TCTGTCT--CTGTGT-------G---------------TG--T-CCCGGTGT----------------------------------------------------------------------CGGT-GTAT-------------CCTGCAGCGGTCGGC-----C---------------------------CCGTGCCTCCA---CCGGTGCCCCACTATCCCG-ACTACCTGCCACC---GGCTCGTCT---G---------GACCC---GCCA
droAna3 scaffold_12929:2280455-2280765 - CACA---CA---CACACAC-------------------ACCCACACCACACACTCTC----ACACACAAACACACACACATATATATA-------------------CACACACATGCACACACT--------GAAACAC--TCT-----------------CTCACACACACA-----------------------------------------------CAC---ACTACGGATTACCATGCACC-TTGC--A---CTTGTGATTTGTCGCTCA-ATTGTGATCGTTA---CC--GCCGAC-------CATC--CGATCC-----------------------TTCGTCCT-------------TGTCGCCTTGTCGCC-TTG-TCGCCC-------TGTGTC---------------------------------CTGTCTC---TGTCCTGGT--------------------------------------------------------------GA-------TTCCCGGTGGTG---ATTGCAGCTGGCGGA-AGT-C---------------------------CTGTGGAGCCACCACCATCCCCGTACATCCCCA-CCTACCTGCCGCC---G---------------------T-----------
droBip1 scf7180000396434:274892-275175 - CC-ACCATA---CAAACAC-------------------AAACACA-------C--------TGAC--------ACACACATATATATA----C-----------AAACACACACATGCACACACTCTCACACACACACACACACACACAAC-----------GG----AATACA-------------------------------------------------------------------TGCACC-TTGC--A---CTTGTGAATTGTCGCTCT-CTTGTGATCGTTA---CC--GCCGAC-------CATC--CGATC-----------------------CTTCGTCCT-------------TGTCGCCTTGTCGCC-T----------------TGTGTC---CTGTGT-------G-----------------TGT-CCTGGT-TCCGGGT--------------------------------------------------------------GAT-----------------------TGCAGCTGGCG----------GCAGTCT------------------C-GTGCAGCCTCCGCCGTCTCCGTACATCCCCA-CCTACCTGCCGCC---G---------------------CC------GACG
dp5 XL_group3a:2042015-2042288 - AC----ACA---CAAAA-----------------------ATACACCAA--TACAC-----TCACACACACACAC--ACCTGTAT-----------------------------------------------------A-----------------------CACACACATACA-------------------------------------------------------------------TGCACCATTGCACACCTTTTGTGAATTGTCGCTGAAATTGTGAACGTT----ACGCGCCGAC-------CC-----GATCGATCGACCGATTCCGAT----C---------------TG---------------GTTGCT-GTCTTT----------------GTCCTTGTGCTGTCTTCGT------------AT------------------------------------------------------------------------------------TGGT-GTGTCTCCGTGGGCA-CGTTGCAGCGGGT----CTT-CCAGTGGTTC------------------CAGCAACGCCACCGCCGGCTTCGTACCGTCCCG-CCTACCTGCCACC---G---------------------GC------CACA
droPer2 scaffold_11:2633869-2634144 + AC----ACA---CAAAA-----------------------ATACACCAA--TACAC-----TCACACACACACACACACCTGTAT-----------------------------------------------------A-----------------------CACACACATACA-------------------------------------------------------------------TGCACCATTGCACACCTTTTGTGAATTGTCGCTGAAATTGTGAACGTT----ACGCGCCGAC-------CC-----GATCGATCGACCGATTCCGAT----C---------------TG---------------GTTGCT-GTCTTT----------------GTCCTTGTGCTGTCTTCGT------------AT------------------------------------------------------------------------------------TGGT-GTGTCTCCGTGGGCA-CGTTGCAGCGGGT----CTT-CCAGTGGTTC------------------CAGCAACGCCACCGCCGGCTTCGTACCGTCCCG-CCTACCTGCCACC---G---------------------GC------CACA
droWil2 scf2_1100000004909:12076425-12076782 - AT-ATCATA---T--ACATGAAATACACACACACACACAACCA----------CAC-----TCACACTCACACAC-------------------------------------------------------------ACAC--ACA-----------------CACAAACATATATGCACTTGCTCATCATTTAACCCCTAAAAAACCCTCAAAAAAACAAAAACGAAAATTCGAAAATCCAA--ACC-AAAA--A--CATTGTGAATTGTTGCC-A-ATTGTGA-CGTCA---TC--GTC--------------------------------TTCGTC----TTCGTCGTCGTCGTCGTC-------G-----TCGTCGTC------------------GTCGTCG--TCGTGG-------GTCATGGTCATGGTCT---------TGTGT-----CTTTGTCTA-------------------------------TG--TCTGTGTGCCGTCTCCATTTACAATG--------------------------G----------------AT---------------------TACAGCGATT---CCGGGATCAAATTATCCAA-CCTATTTGCCACC---AGTGGCCGT---GGCCACA---CCATC---ACCA
droVir3 scaffold_13047:3380197-3380409 + ACAA---CA---CAAAATC-------------------AAAGACAG------CAAA-----AAACACACGCACACACACATAAACACACACACAC-------ACAC----------------------ACACACACACACACTCGCACAAC-----------TACACACACAGA------------CT------------------------------------------------------------A---------------------------------------C----TC--ACCGTT-------CTTT----------------------------TTTGTCGCCGA-------------GTTAGCCTTTTTGCC-C----------------CCTTTTA--GCATAT-------T---------------TTTGCTGCTGTTGT--TGTT--------------------------------------------------------------GCCGGC--------------------T-----CG-------------TC--TAG------------------CTGCAGCTACT---GCGGCGCCGACGAG-------------------------------------------------------C
droMoj3 scaffold_6473:13649525-13649890 + ATC-TCACA---CAAACAT-----------------------ACACGTA--CACAC-----ACATACA----CACACACATA----------CACTCGCCGTTCACACAC--------------------------ACAC--ATACACAAACACAAAACACACACACACACACATGCACTTAATCATCCCATA-------------------------------------------------------ACCC--A---ATTGTGAATTGTCGCCCA-ATTGTGAACGTTACAACC--GCCGAAA------CATCCTCGACTC----------GTCGTT----CTCGTCGTCTTCGTCGTT---------------GTCGTC-GTCTTC----------------ATCCTCGTAC-------CGCTTCGTCTTCGTCT---------TCTGTTGTGTC------TACTGTGTATTGTGC----------------------------CGCCGCCTCCTCTGGCTGTG--------------------------GCT----GTG-ACTGTGGTTGTGGTCTGGCTTTGCTCTGCAGCGGGCATG--------ACCCAACCGA-GCG-CCTACCTGCCGCC---C---------------------TCGCG---GCCA
droGri2 scaffold_15203:8371206-8371531 + AATGCCACA---CACACAC-------------------ACACAAA-------A-----------CACACACACACACAACTACAC-----------------------------------------------------AC--A-------------------CACACATATACGTGCACTTGTTCATCACATA-------------------------------------------------------ACTC--A---ATTGTGAATTGTCGCC-A-ATTGTGAACGTTGCAACC--GCCGAAACACAAACATC-----------------TTCAAATCCTCCTCGTCGTCATCGTCGTCGTCGT-CGTC-----GTCGTC------------------GTCGTCA--CTCTTA-------T---------------TGTTGCTTTACTGTGCTGTC--------CCGTGTTTTGTGGTGGTGGTGATCTTTACGATGCTCCTCTGTCCCGTCC-----------------TC--TGCGGA-TGCTGCAGCGGGC--------------------------------------------------------------------G-GATATCTGCCGCC---GGTTCTACGTACACCGCCA---CCAGA---GCCA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACCACCACA---CAAACAC-------------------GAATAAA-------CCAC-----CCACACAAATACACACACATAAACACA--------------------------------------------------------------------------CGAACACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCACCT-------------TGTCGACCTGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------TGTGTATCTGGTGTCCTGTT--------------------------------------------------------------GACGGT--------------------T-----TG-------------GCGGTAT------------------CAGCGGCTACC---CCGCCACCCAACAGCCCCA-TCTACCTGCCGCC---G---------------------CAATT---GCCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................GAC-------CATC----------------------------CTTGTCCACCT-------------TGTCGACCTGG..........................................................................................................................................................................................................................................................................................................2911.00101000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTGTT--------------------------------------------------------------GACGGT--------------------T-----TG-------------GCGGTA.......................................................................................................2411.00100000010000000000
...................................................................................................................................................................................................................................................................................................................................................................................ACCTGTCGCC-T----------------TCTTTCA--ATGT.......................................................................................................................................................................................................................................................................2211.00100000001000000000
........................................................................................................................................................................................................................................................................................................................TC----------------------------CTTGTCCACCT-------------TGTCGACCTGTCGCC-.....................................................................................................................................................................................................................................................................................................2811.00100000000001000000
droSec2
ACCACCACA---CAAACAC-------------------GAA-AAA-------CCAC-----CCACACAAATACACACACATAAACACA--------------------------------------------------------------------------CGAACACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCACCT-------------TGTCGACCTGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------TGTGTATCTGGTGTCCTGTT--------------------------------------------------------------GACGGT--------------------T-----TG-------------GCGGTAT------------------CAGCGGCTACC---CCGCCACCCAACAGCCCCA-TCTACCTGCCGCC---G---------------------CAGTT---GCCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTGTT--------------------------------------------------------------GACGGT--------------------T-----TG-------------GCGGTAT------------------CAA.................................................................................2811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT--------------------------------------------------------------GACGGT--------------------T-----TG-------------GCGGTAT------------------CAG.................................................................................2311.0011000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTGTT--------------------------------------------------------------GACGGT--------------------T-----TG-------------GCGGTT.......................................................................................................2411.0010100
dm3
ACCAACACA---CAAACAC-------------------GAATAAA-------CCAC-----CCACACAAATACACACACATAAACACA-------------------------------------------------------CG-----------------AACACAC-CACA-------------------------------------------------------------------TGCACCCATGCGCA---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCACCT-------------TGTCGACCTGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------TGTGTATCTGGTGTCCTATT--------------------------------------------------------------GACGATT----GACG---GCTGATGGT-----TG-------------GCGATAT------------------CAGCGGCTACC---CCGCCACCCAACAGCCCCA-TCTACCTGCCACC---G---------------------CAATT---GCCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---GCTGATGGT-----TG-------------GCGATAT------------------CAG.................................................................................23112.00120000000000000000000000000000000000000100000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000001000000200000000000000000000000000000000000000000000000100000200100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---GCTGATGGT-----TG-------------GCGATAT------------------CA..................................................................................2219.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000100000000001000000001300000100000000
................................................................................TAAACACA-------------------------------------------------------CG-----------------AACACAC-CACA-------------------------------------------------------------------TGCACC............................................................................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---GCTGATGGT-----TG-------------GCGATAT------------------CAGC................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTGTCGCC-T----------------TCTTTCA--ATGTGC-------..............................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGATGGT-----TG-------------GCGATAT------------------CAG.................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG---GCTGATGGT-----TG-------------GCGATAT------------------C...................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000100000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTGTCCTATT--------------------------------------------------------------GACGATT----GACG---..........................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................AC-------------------GAATAAA-------CCAC-----CCACACAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGTGTCCTATT--------------------------------------------------------------GACGATT----GACG---GC........................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATT----GACG---GCTGATGGT-----TG-------------GCGAT........................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCA--ATGTGC-------G---------------TGTGTATCTGGTGTCCTA............................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGT-----TG-------------GCGATAT------------------CAG.................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000
...............................................................................................................................................................................................................................................................................................TT----CC--GCCGAC-------CATC----------------------------CTTGTCCA.....................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCA--ATGTGC-------G---------------TGTGTATCTGG...................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTGTCGCC-T----------------TCTTTCA--ATGTGC-------A---------------..............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTATCTGGTGTCCTATT--------------------------------------------------------------GACGAT......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---GCTGATGGT-----TG-------------GCGATAT------------------....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTATT--------------------------------------------------------------GACGATT----GACG---GCTGATGG..................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................T----------------TCTTTCA--ATGTGC-------G---------------TGTGTATCTGGTG.................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCA-TCTACCTGCCACC---G---------------------CAATT---GCCA2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................TCGACCTGTCGCC-T----------------TCTTTCA--ATGTGC-------..............................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................TGTGAATTGTCGCTGA-AT............................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................TGTGAATTGTCGCTGA-ATTGTGATCGT...................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................TACACACACATAAACACA-------------------------------------------------------CG-----------------AACACAC-C........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................T----CC--GCCGAC-------CATC----------------------------CTTGTCCA.....................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CTTTCA--ATGTGC-------G---------------TGTGTATCTGG...................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................GA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------.............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT--------------------------------------------------------------GACGATT----GACG---GCTGATGGT-----T...........................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GCTGATGGT-----TG-------------GCGATAT------------------C...................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT--------------------------------------------------------------GACGATT----GACG---GCTGATGGT-----............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTTCA--ATGTGC-------G---------------TGTGTATCTGGT..................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................................................................................................................................................................................................................................................................................................................................GTCCACCT-------------TGTCGACCTGTCGCC-.....................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....CACA---CAAACAC-------------------GAATAAA-------CCAC-----CCAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT----GACG---GCTGATGGT-----T...........................................................................................................................1811.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---GCTGATGGT-----TG-------------GCGATAT------------------CAG.................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCA-TCTACCTGCCACC---..................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGATGGT-----TG-------------GCGATAT------------------CAG.................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TCA--ATGTGC-------G---------------TGTGTATCTGGTG.................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................................................................................................................................................................................................................TGTCCACCT-------------TGTCGACCTGTC.........................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................T----------------TCTTTCA--ATGTGC-------G---------------TGTGTATC......................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGGT-----TG-------------GCGATAT------------------CAGCG...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATT----GACG---GCTGATGGT-----TG-------------GCGAT........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................CTGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------T.............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCTATT--------------------------------------------------------------GACGATT----GACG---A.........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................GAATTGTCGCTGA-ATTGTGATCGTT----..............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CTTGTCCACCT-------------TGTCGACCTGTCGCC-T----------------....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCCCCA-TCTACCTGCCA.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------------GACGATT----GACG---GCTGATGGT-----TG-------------G............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................CTGTCGCC-T----------------TCTTTCA--ATGTG......................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGGT-----TG-------------GCGATAT------------------CAG.................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................TGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------TG............................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACCAACACA---CAAACAC-------------------GAATAAA-------CCAC-----C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----GACG---GCTGATGGT-----TG-------------GCGATAT------------------CAG.................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................CA--ATGTGC-------G---------------TGTGTATCTGGTGTCC..............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----GACG---GCTGATGGT-----TG-------------GCGATAT------------------C...................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCA-TCTACCTGCCACC---G---------------------CAATT---GCC.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATT--------------------------------------------------------------GACGATT----GACG---GCTGATGGT-----TG-------------.............................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACTACCACA---CAAACAC-------------------GGATAAA-------CCAC-----CCACACAAATACAC--ACATAAAC-----------------------------------------------------A----CA-----------------CACGAACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCTCC-------------------ACTTGTCGCC-T----------------TCTTTCA--ATGTGC-------G---------------TGTGTAACTGGTGTCCTGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------CAGCGGCTACC---CCGCCACCCAACAGCCCCA-TCTACCTCCCGCCGCCG---------------------CAGTT---GCCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCC-T----------------TCTTTCA--ATGTG......................................................................................................................................................................................................................................................................2114.0040000040
.....................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCC-T----------------TCTTTCA--ATGT.......................................................................................................................................................................................................................................................................2011.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------CA..................................................................................2111.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------C...................................................................................2511.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGG.........................................................................................................2111.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................TTGTCGCC-T----------------TCTTTCA--ATGTGT-------..............................................................................................................................................................................................................................................................2211.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------CAG.................................................................................2211.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCTGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------CAG.................................................................................2611.0010000010
droYak3
ACTACCACA---CAAACAC-------------------GGATAAACCAA--ACCAC-----TCACACAATTACAC--ACATAAACA----------------------------------------------------------------------------CACGAACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCCTCCACCCTGTCGTCGACTGTCGACCTGTCGCC-T----------------CCTTTCA--ATGTGC-------G---------------TCTGTATCTGGTGTCCTGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------CAGCGGCCACC---CCGCCACCCAACAGCCCCA-TCTACCTGCCGCC---G---------------------CAATT---ACCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCTGTT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------....................................................................................2411.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--------------------------------------------------------------GACGGT--------------------T------G-------------GCGGTAT------------------CA..................................................................................1911.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................ACCTGTCGCC-T----------------CCTTTCA--ATGT.......................................................................................................................................................................................................................................................................2211.00110000000000
droEug1
ACCA---CA---CAAATACAC---ACAAACACAAATACAAATACA-------CCAC-----CCAAACATCTACACATAT-----------------------------------------------------ACACACAC--ACA-----------------CACAAACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGAACGTT----CC--GCC----------CATC----------------------------CTTGTCGTCCT-------------TGTCGACCTGTCGCCCC----------------CCTTTCA--ATGTGT-------GT--------------TGTG------AT----------------------------------------------------------------------TGTGAT--------------------T-----GG-------------GCGGAAT------------------CAGCGGCGACC---CCGCCCCCCAA------CA-TCTACCTGACGCC---A---------------------CAATT---ACCASizeHit CountTotal NormTotal
No Reads
droBia1
AC----ACA---CAAACAC-------------------AAATACA-------CCAC-----CCACACACACATAC--ACATAATT----------------------------------------------------------------------------------ACACATA-------------------------------------------------------------------CGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGATCGTT----CC--GCCGAC-------CATC----------------------------CTTGTCGTCCT-------------TGTCGACCCGTTGAC-CTG-TCGCGCTGTCGCCCCTTTCA--ATGTGT-------G---------------TGTGTACCGGATATCCTGTT--------------------------------------------------------------GGCGGT--------------------T-----GG----GCGGTATCAGCGGTAT------------------CAGTGGCCACT---CCGCCCC----------CACTCTACCTGCCGCC---AGTGCCAAC---AGCGCCC---CCCTC---TACASizeHit CountTotal NormTotal
No Reads
droTak1
AC-A---CA---CAAAC---C---ACACACACAAATACAAATACA-------CCAC-----CCACACACATACACATACTTAAAC-----------------------------------------------------AC--ACA-----------------CATAAACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGAACGT--------------------------------------------------------------CCT-------------TGTCGACCTGTCGCCCC----------------CGTTTCA--ATGTGT-------G---------------TGTGTATCCGATGTCCTGTT--------------------------------------------------------------GGCGGT--------------------T-----GG----GCCTTATCAGCGGTAC------------------CAGCGG------------CTCCCCAGAACCCCA-TCTACCTGCCGCC---AGTGG---------CGCCA---CCACGTTCGCCCSizeHit CountTotal NormTotal
No Reads
droEle1
ACTA---CACTACACAC-----------ACACAAACACAATTACA-------CCACCACACACACACACACTCACATAT-----------------------------------------------------CTACACAC--ACA-----------------TATATACACACA-------------------------------------------------------------------TGCACCCATGC--A---CCTGTGAATTGTCGCTGA-ATTGTGAATGTT----CC--GCCGAA-------CATC----------------------------CTTGTCGTCCT-------------TGTCGACCTGTCGCC------------------CCTGTCA--ATGTGT-------G---------------TGTGTATCTGGTGTCCTGTC--------------------------------------------------------------GACTGT--------------------T-----GG-------------GCGGTAT------------------CAGCGGCGACC---CCGCCCCCCTACAGCCCCG-CCTACCTGCCGCC---GGTGCCCAC---GGCGCCCCCACACTT---ACCGSizeHit CountTotal NormTotal
No Reads
droRho1
ACTA---CACTACACACAC---------ACAC------AAACACA-------C--------------ACACTCACATACCTACAC--ACACACAC-------TCAC----------------------ATATCTACACACACACACACAAC-----------CATATACACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGAACGT--------------------------------------------------------------CCT-------------TGTCGACCTGTCGCC------------------CCTGTCA--ATGTGT-------G---------------TGTGTACCTGGTATCCTGTC--------------------------------------------------------------GTCGGT--------------------T-----TG-------------GCGGTAT------------------CAGCGGCGAGC---CCGCCCCCCTACAGACCCG-CCTACCTGCCGCC---GGTGGCCAC---CGCGCCCCCGCAATT---ACCASizeHit CountTotal NormTotal
No Reads
droFic1
AA-ACCACA---C--ACAC-------------------AAATACT-------CCAC-----CCACACAC-TACACATAT-----------------------------------------------------CTACACAC--TCACACAAA-----------CATAAAAACACA-------------------------------------------------------------------TGCACCCATGC--A---CTTGTGAATTGTCGCTGA-ATTGTGAACGTT----CC--GCCGAA-------CATC----------------------------CTTGTCGTCCT-------------TGTCGACCTGTCGCC-C----------------CCTGTCA--ATGTGT-------ATC-------------TGTGTATCTGGTGTCCCGTT-------------------------------------------------------------TGGCTGTG-----------GCTG-TGTT-----GG-------------GCGATAT------------------CAGCGGCGACC---CCGCCCCCCTACAACCCCG-CCTACCTGCCGCC---G---------------------CCGTT---GCCASizeHit CountTotal NormTotal
No Reads
droKik1
ACTA---CA---AAAACACAC--------TAC------AAACA---------------------CACAC-TATACACAC-------------------------------------------ACC-------CTACACAC--CCACAT--------ACGCCACACATATATACA-------------------------------------------------------------------TGCACC-TTGC--A---CTTGTAAATTGTCGCTGA-ATTGTGAACGTT----CC--GCCGAC-------CATC----------------------------CTT--CGTCCT-------------T--CGT-CCGTTGCC-G----------------TCTGTCT--CTGTGT-------G---------------TG--T-CCCGGTGT----------------------------------------------------------------------CGGT-GTAT-------------CCTGCAGCGGTCGGC-----C---------------------------CCGTGCCTCCA---CCGGTGCCCCACTATCCCG-ACTACCTGCCACC---GGCTCGTCT---G---------GACCC---GCCASizeHit CountTotal NormTotal
No Reads
droAna3
CACA---CA---CACACAC-------------------ACCCACACCACACACTCTC----ACACACAAACACACACACATATATATA-------------------CACACACATGCACACACT--------GAAACAC--TCT-----------------CTCACACACACA-----------------------------------------------CAC---ACTACGGATTACCATGCACC-TTGC--A---CTTGTGATTTGTCGCTCA-ATTGTGATCGTTA---CC--GCCGAC-------CATC--CGATCC-----------------------TTCGTCCT-------------TGTCGCCTTGTCGCC-TTG-TCGCCC-------TGTGTC---------------------------------CTGTCTC---TGTCCTGGT--------------------------------------------------------------GA-------TTCCCGGTGGTG---ATTGCAGCTGGCGGA-AGT-C---------------------------CTGTGGAGCCACCACCATCCCCGTACATCCCCA-CCTACCTGCCGCC---G---------------------T-----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
CC-ACCATA---CAAACAC-------------------AAACACA-------C--------TGAC--------ACACACATATATATA----C-----------AAACACACACATGCACACACTCTCACACACACACACACACACACAAC-----------GG----AATACA-------------------------------------------------------------------TGCACC-TTGC--A---CTTGTGAATTGTCGCTCT-CTTGTGATCGTTA---CC--GCCGAC-------CATC--CGATC-----------------------CTTCGTCCT-------------TGTCGCCTTGTCGCC-T----------------TGTGTC---CTGTGT-------G-----------------TGT-CCTGGT-TCCGGGT--------------------------------------------------------------GAT-----------------------TGCAGCTGGCG----------GCAGTCT------------------C-GTGCAGCCTCCGCCGTCTCCGTACATCCCCA-CCTACCTGCCGCC---G---------------------CC------GACGSizeHit CountTotal NormTotal
No Reads
dp5
AC----ACA---CAAAA-----------------------ATACACCAA--TACAC-----TCACACACACACAC--ACCTGTAT-----------------------------------------------------A-----------------------CACACACATACA-------------------------------------------------------------------TGCACCATTGCACACCTTTTGTGAATTGTCGCTGAAATTGTGAACGTT----ACGCGCCGAC-------CC-----GATCGATCGACCGATTCCGAT----C---------------TG---------------GTTGCT-GTCTTT----------------GTCCTTGTGCTGTCTTCGT------------AT------------------------------------------------------------------------------------TGGT-GTGTCTCCGTGGGCA-CGTTGCAGCGGGT----CTT-CCAGTGGTTC------------------CAGCAACGCCACCGCCGGCTTCGTACCGTCCCG-CCTACCTGCCACC---G---------------------GC------CACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................GTT----ACGCGCCGAC-------CC-----GAT...................................................................................................................................................................................................................................................................................................................................................................1813.0030210000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCT-GTCTTT----------------GTCCTTGTGCTGT..................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGGT----CTT-CCAGTGGTTC------------------CAGC................................................................................2611.0010000001000
.......................................................................................................................................................................................................................................................ATTGCACACCTTTTGTGAATTGTCG...................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT----CTT-CCAGTGGTTC------------------CAGCAACGCCACC.......................................................................2811.0010010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGCCACCGCCGGCTTC..............................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................C-----GATCGATCGACCGATTCCGAT----C---------------.............................................................................................................................................................................................................................................................................................................................2311.0010100000000
droPer2
AC----ACA---CAAAA-----------------------ATACACCAA--TACAC-----TCACACACACACACACACCTGTAT-----------------------------------------------------A-----------------------CACACACATACA-------------------------------------------------------------------TGCACCATTGCACACCTTTTGTGAATTGTCGCTGAAATTGTGAACGTT----ACGCGCCGAC-------CC-----GATCGATCGACCGATTCCGAT----C---------------TG---------------GTTGCT-GTCTTT----------------GTCCTTGTGCTGTCTTCGT------------AT------------------------------------------------------------------------------------TGGT-GTGTCTCCGTGGGCA-CGTTGCAGCGGGT----CTT-CCAGTGGTTC------------------CAGCAACGCCACCGCCGGCTTCGTACCGTCCCG-CCTACCTGCCACC---G---------------------GC------CACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........................................................................................................................................................................................................................................................................................................................................CGATTCCGAT----C---------------TG---------------GTTGCT-GTCTT................................................................................................................................................................................................................................................................................................2413.003300000
....................................................ACAC-----TCACACACACACACACACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2370.141010000
droWil2
AT-ATCATA---T--ACATGAAATACACACACACACACAACCA----------CAC-----TCACACTCACACAC-------------------------------------------------------------ACAC--ACA-----------------CACAAACATATATGCACTTGCTCATCATTTAACCCCTAAAAAACCCTCAAAAAAACAAAAACGAAAATTCGAAAATCCAA--ACC-AAAA--A--CATTGTGAATTGTTGCC-A-ATTGTGA-CGTCA---TC--GTC--------------------------------TTCGTC----TTCGTCGTCGTCGTCGTC-------G-----TCGTCGTC------------------GTCGTCG--TCGTGG-------GTCATGGTCATGGTCT---------TGTGT-----CTTTGTCTA-------------------------------TG--TCTGTGTGCCGTCTCCATTTACAATG--------------------------G----------------AT---------------------TACAGCGATT---CCGGGATCAAATTATCCAA-CCTATTTGCCACC---AGTGGCCGT---GGCCACA---CCATC---ACCASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGCCACC---AGTGGCCG..........................1911.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---------TGTGT-----CTTTGTCTA-------------------------------TG--TCTGTGTGC......................................................................................................................................................................2711.00100010
.....................................................................................................................................................................................................................................................................................................................................................................GTC-------G-----TCGTCGTC------------------GTCGTCG--TCGTGG-------..............................................................................................................................................................................................................................................................25110.09100010
droVir3
ACAA---CA---CAAAATC-------------------AAAGACAG------CAAA-----AAACACACGCACACACACATAAACACACACACAC-------ACAC----------------------ACACACACACACACTCGCACAAC-----------TACACACACAGA------------CT------------------------------------------------------------A---------------------------------------C----TC--ACCGTT-------CTTT----------------------------TTTGTCGCCGA-------------GTTAGCCTTTTTGCC-C----------------CCTTTTA--GCATAT-------T---------------TTTGCTGCTGTTGT--TGTT--------------------------------------------------------------GCCGGC--------------------T-----CG-------------TC--TAG------------------CTGCAGCTACT---GCGGCGCCGACGAG-------------------------------------------------------CSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.......................................................................................................CAC----------------------ACACACACACACACTCGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.255000000000000000000000000000050000000000000000000000000000000000
..............................................................................CATAAACACACACACAC-------A............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051001000000000000000000000000000000000000000000000000000000000000
.......................................................A-----AAACACACGCACACACACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATC-TCACA---CAAACAT-----------------------ACACGTA--CACAC-----ACATACA----CACACACATA----------CACTCGCCGTTCACACAC--------------------------ACAC--ATACACAAACACAAAACACACACACACACACATGCACTTAATCATCCCATA-------------------------------------------------------ACCC--A---ATTGTGAATTGTCGCCCA-ATTGTGAACGTTACAACC--GCCGAAA------CATCCTCGACTC----------GTCGTT----CTCGTCGTCTTCGTCGTT---------------GTCGTC-GTCTTC----------------ATCCTCGTAC-------CGCTTCGTCTTCGTCT---------TCTGTTGTGTC------TACTGTGTATTGTGC----------------------------CGCCGCCTCCTCTGGCTGTG--------------------------GCT----GTG-ACTGTGGTTGTGGTCTGGCTTTGCTCTGCAGCGGGCATG--------ACCCAACCGA-GCG-CCTACCTGCCGCC---C---------------------TCGCG---GCCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT----GTG-ACTGTGGTTGTGGT..................................................................................................2011.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCTTTGCTCTGCAGCGGGC............................................................................2211.001100000
...............ACAT-----------------------ACACGTA--CACAC-----ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19140.071100000
droGri2
AATGCCACA---CACACAC-------------------ACACAAA-------A-----------CACACACACACACAACTACAC-----------------------------------------------------AC--A-------------------CACACATATACGTGCACTTGTTCATCACATA-------------------------------------------------------ACTC--A---ATTGTGAATTGTCGCC-A-ATTGTGAACGTTGCAACC--GCCGAAACACAAACATC-----------------TTCAAATCCTCCTCGTCGTCATCGTCGTCGTCGT-CGTC-----GTCGTC------------------GTCGTCA--CTCTTA-------T---------------TGTTGCTTTACTGTGCTGTC--------CCGTGTTTTGTGGTGGTGGTGATCTTTACGATGCTCCTCTGTCCCGTCC-----------------TC--TGCGGA-TGCTGCAGCGGGC--------------------------------------------------------------------G-GATATCTGCCGCC---GGTTCTACGTACACCGCCA---CCAGA---GCCASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACACCGCCA---CCAGA---GCC.1911.00110

Generated: 05/19/2015 at 03:03 AM