dsi_9926

CDS [3l_18438545_18439465_+]; exon [3l_18438545_18439465_+]; intron [3l_18435061_18438544_+]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACGCTCTGCAATCTTTATGTTTATGTTTTCTTGGCGAAAACCGAGAGATTAAATGAAAGTCCGCGGCCCAAAAAAGAATTATCGCAATAGACCCGATAAGATTGGACGACACTTGAACCAATATAATAGAGCAGAAAGTTGCATAGCACCTTGAAATTAAAAAACATCTGATTAAACTTGACTTTCATTTGCTTTTGCAGGTTTCTCCAGGTGCCATTACCACCGGCAATGGAGCACCCATTGGAATCAA ************************************************.((((((((((.................((((((.........)))))).(((((.(((...)))..))))).........(((((((.(((...))).)))..............)))).........))))))))))(((....))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	M023 head	M024 male body	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries
.....................TATGTTTTATTGGCGAAAAC.................................................................................................................................................................................................................	20	1	1	1.00	1	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................ATTACCACCGGCAATGGAGC...............	20	0	1	1.00	1	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................CATTACCACCGGCAATGGA.................	19	0	1	1.00	1	1	0	0	0	0	0	0	0
............................................................................AATTATCGCAATAGACCC............................................................................................................................................................	18	0	1	1.00	1	0	0	0	0	1	0	0	0
..................................................................................................................................................................................TGACTTTTATTCGCTTTTGCAGGTTA..............................................	26	3	1	1.00	1	0	0	0	0	0	0	1	0
...............................................................................................................GTTGAACCAATATAATAGA........................................................................................................................	19	1	1	1.00	1	0	1	0	0	0	0	0	0
...........................................................................................CCCGATAAGATTGGACGA.............................................................................................................................................	18	0	1	1.00	1	0	0	0	0	0	1	0	0
......................................................................................................................................................................................................................CATTACCACCGGCAACGCAGC...............	21	2	2	0.50	1	1	0	0	0	0	0	0	0
.....................................................................................................................................GAAAGATGAAAAGCACCTTGA................................................................................................	21	3	5	0.20	1	0	0	1	0	0	0	0	0
........................................................................AAAGATTTATCGCAGTAG................................................................................................................................................................	18	2	6	0.17	1	0	1	0	0	0	0	0	0
.........................................................................................................................TATAATAGAGCAGTAAGGTA.............................................................................................................	20	3	6	0.17	1	0	0	0	0	0	0	0	1
..........................................................................AGGGTTATCGCAATAG................................................................................................................................................................	16	2	20	0.10	2	0	2	0	0	0	0	0	0
...............................................................................................................................................TAGCACCATGAGATTCAAAAA......................................................................................	21	3	20	0.05	1	0	0	0	1	0	0	0	0

TGCGAGACGTTAGAAATACAAATACAAAAGAACCGCTTTTGGCTCTCTAATTTACTTTCAGGCGCCGGGTTTTTTCTTAATAGCGTTATCTGGGCTATTCTAACCTGCTGTGAACTTGGTTATATTATCTCGTCTTTCAACGTATCGTGGAACTTTAATTTTTTGTAGACTAATTTGAACTGAAAGTAAACGAAAACGTCCAAAGAGGTCCACGGTAATGGTGGCCGTTACCTCGTGGGTAACCTTAGTT ************************************************.((((((((((.................((((((.........)))))).(((((.(((...)))..))))).........(((((((.(((...))).)))..............)))).........))))))))))(((....))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	SRR553488 RT_0-2 hours eggs
................................................................................................................................................................TTTTGTATACCAATTTGAACTGA...................................................................	23	2	1	1.00	1	1	0
...............................ACCGCCTTTGCCTCTCTAA........................................................................................................................................................................................................	19	2	2	0.50	1	0	1
............................................................................................GGCTATTCCAACTTGCT.............................................................................................................................................	17	2	10	0.10	1	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:18438345-18438594 +	dsi_9926	ACGC---TCTGCAATCTTTATGTTTATGTTTTC-T----TGGCGA----AAACCGAG-----AGATT---------------------------------------------AAATGAAA--GTCCGC--GGCCCAAAA--AAG-AATTATCGCAATA-GA---C-----CCGATAAGATTGGACGACACTT-GAA--CCAA----TATAATAGAGCAGAAA----GTT----GCAT--------AGCACCTTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAAACATCTGATTAAACTTGACTT------------------T-CATT----TG--CTTTTGCAGGTTTCT-CCA-GGTGCCATTACCACCGGCAATGGAGCAC-CCATTGGAATCAA
droSec2	scaffold_19:783384-783633 +		ACGC---TCTGCAATCTTTATGTTTATGTTTTT-T----TGGCGA----AAACCGAG-----AGATT---------------------------------------------AAATGAAA--GTCCGC--GGCCCAAAA--AAG-AATTATCGCAATA-GA---C-----CCGATAAGATTGGACGACACTT-GAA--CCCA----TATAATAGAGCAGAAA----GTT----GAAT--------AGTACCTTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAATACATCTGATTAAACTTGACTT------------------T-CATT----TG--CTTTTGCAGGTTTCT-CCA-GGTGCCATTACCACCGGCAATGGAGCAC-CCATTGGAATCAA
dm3	chr3L:18819233-18819487 +		ACGC---TCTGCAATCTTTATGTTAATGTTTTTTTCTTTTGGTGA----AAATCGAA-----TGATT---------------------------------------------AAATGAAA--GTCCGC--GGGCCAAAA--ATG-AATTATCGCAATA-GG---C-----CCGATAAGATTGTAAGACACTT-GAA--CCAA----TATATTGTTGCTGAAT----GTT----GCAT--------AGCATTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------ATTAAAATACATTTGATTAAACTTGACTT------------------T-CATT----TG--CTTTTGCAGGTTTCT-CCT-GGTGCCATTACCACCGGCAATGGAGCAC-CCATTGGAATCAA
droEre2	scaffold_4784:15112987-15113243 -		ACGC---TTTGCAATCTTTATGTTTATGTTTTTT------GGCGA-----AACCCAA-----AGATTA--------------------------------------------AAATGAAA--GTCCGC--TGCCCAAAA--AAG-AATTATCGCA-TA-GA---C-----CTGATAAGATGGGACGACACTT-GAA--CTAA----CATTTTAGAGCAGAAA----GTTA-TGGAAT--------TGCCCTGTGCATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCT--TGAA-------------------------------------------------------------------------------ATTAAAATAAAATGCATTAAAA------A------------------T-CATT----TA--TATTTGCAGGTTCCT-CCA-GGTGCCATTACCACCGGTAATGGAGCAC-CCATTGGAATCAA
droYak3	3L:15251863-15252134 -		ACGC---TGTGCAATCTTTATGTTTATGTTTTTT------GGCGA----AAACCCAA-----GGTTT---------------------------------------------AAATGAAA--GTCCGC--TGCCGAAAA--AAG-AATTATCGCAATA-GA---G-----CTGATAAGATTGCACGACACTT-GAA--CTAA----CATTTTAGTGCACAAA----GTTA-AGAAAGTTAAGTTATGCCCTGTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCACCT--TGAA-------------------------------------------------------------------------------ATTAAAACGAAATTCATTAAACTTGACTT------------------T-CATT----TA--TGTTGGCAGGTTTCT-CCA-GGTGCCATCACCACGGGCAATGGAGCAC-CCATTGGAATCAA
droEug1	scf7180000409471:671434-671705 -		AAGC---TGTGCAATCTTTATGTTTATGTTTTTCT----CGG-------CGGCCCAG-----CGATTAT----------------------AAAT------A--------AAAATTTAAA--GTCCGC--ACCCCAA-A--AAG-TATTATCGCTAAA-GC---A-----ACGATTAGATTAGACGGCACTTTAAA--CTGG----TATTATATAAGAAAAA----GTTG-GGGAAG--------TGCACTTTGCAACCAGAGTTACCA---------------------------------------------------------------------------------------------------------------------------------------------CATT------------------------------------------------------TTAAAGGCAACTT----------------------------------------------------------AAT-GAAT--ATTT------------------T-CCCT----TT--TACTTACAGATTTCG-CCG-GGAGCCATTACCACTGGTCATGGAGCCC-CCATTGGCATCAA
droBia1	scf7180000302529:685110-685425 -		AACC---TCCGCAATCTTTATGTTTATTTTTTCTG----CGG-------GAGGCCAA-----AGATTAT----------------------AA-T------A--------ACAAATGAAA--GTCCGC--CGCCCAAAA--AAG-AATTATCGCTTAA-GC---A-----CATATAAGATTAAGCGACATTTCGAAAAATAA----TATTATATAAGA---------------AGAT--------TGTACTTTGCAGCCATGGTTACTAATATGTAACAATATTTAATAC--------------------------AA--------------------------------------AA--A------------------------------------------------------------------TGTGTTGCAAGT--TGCA--------------------------------ATT-ACA--AATACTGA--AAATG---------------------------------GCTTGAATTGACCCAATTT------------------C-CCTT----TA--CCTTTGCAGGTTTCA-CCG-GGAGCCATTACCACTGGTCATGGGGCAC-CCATCGGAATCAA
droTak1	scf7180000415184:236695-237024 -		AAGC---TGTGCAATCTTTATGTTTATGTTTTTCG----TGG-------CAGCCCAA-----AGATTAT----------------------AAAT------A--------AAAATTTAAA--GTCCGC--AGCCCAAAA--AAG-AATTATCGCTTAA-GT---G-----CCGATAAGATTAGACGACACTTTGAA--CTGA----TATTATATAACGAAAA----GTTA-GGAAAC--------TGCACTTTGAAGCA-CGGTTACTAATTTTTACCAATTATTCAGGC--------------------------AA--------------------------------------AA--AAATTA---ATTA---AA---TTAATT----------------------------------------TGGTTTATAGTT--CGAAA-------TTATAAG---------------CAACTTA---------------------------------------------------------AGTTGACTTGAT--------------------TTGA-TT---TA---TTTTTCAGGTTTCA-CCG-GGCGCCATTACCACAGGCCATGGAGCAC-CTATTGGAATCAA
droEle1	scf7180000490993:1731098-1731263 +		AAGC---TCTGCAATCTTTATGTTTATGTTTTTCG----TGG-------CAGCCCAA-----CGATTAT----------------------AAATT----AA--------AAAAATTAAA--GTCCGC--ACCCCAAAA--AAG-AATTATCGCTAAC-GA---A-----CCGATAAGATTAGGCGACACTTTAAA--CCGG----CATTATATAACGAAAA----TCTA-GGAAAT--------TGCACTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000779212:26946-27340 -		AAGC---TCGGCAATCTTTATGTTTATGTTTTTCG----TGG-------GCTGTC-A-----CGATTATACAT--------------------ATA----TA--------AAAAATGAAA--GTCCGC--ACCCCAAAA--AAG-AATTATCGCTAAA-GT---G-----CCGATAAGATTAGGCGACACGTTAAA--CAGG----CATTATATAAGAAAGA----GGTA-TTGGAT--------TGCACTTTGCAACTACGTTTACT-----------------------------------------------------------------TATT-TGAAAACTT-------------------ATT---A--AAACA--A-ATAATAAAATTCTAATTAAAAAATGTGATT-------AAAATGTGTGTTTCAGTT--TAAA-------------AT---TAAATTA---AA-TTT-----TAAACTTTGACCAGATGTTTTGAAGTGCAAAAATAAAAAC---CAAACTA-----AATTT--CCGGT--------------------TTGC-TCC--AA--TTTTTAAAGGTTTCG-CCG-GGAGCGATCACCACTGGCCATGGAGCCC-CAATTGGTATCAA
droFic1	scf7180000453824:175986-176154 +		AAGC---CGTGCAATCTTTATGTTTATGTTTTTCG----TGG-------CAGCCCGG-----CGATTAT----------------------AACA------A--------AGGAATGAAA--GTCCGC--AGCCCAAAA--AAG-AATTATCGCCTAA-GC---G-----CAGATAAGATTAGAGGACTTTTCGGA--CTTG----CATTATATAACAAAAA----GTTA-CGGTGT--------TGCACTTTGCAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302248:152709-153076 -		AAGT---CCTACAATCTTTATGTTTATGTTTTTGG----TGGTGA--CAGCGTCCAT-----AGATTAT----------------------AAATA----TG--------AAATATGAAA--GTCCGCAAGACCAAAAA--AAG-AATTATCGCCTAAAGC---T-----TCGATAAGATTAGGCGACACTTTGAA--CTGGTAA-TATTATATAACGAAAA--AAGTAAGTAGAAT--------TGCACTTTGCAACGT-AG----------------------CCGGTA-------------------------AAGTTTTT--C----TTTATT-TGT-----ATAATTTAAAAA--AAATGA---ATTAGTAAA---CC-ATT----------------------------------------TGCTTGGTAACT--TGAAAAGTTGCATTAAAAGGTCACAACTAAGTTGTTTT-----T-------------------------------------------------------------TTTATTT------------------T-AT-T--T-TC--TTTTCTCAGGTCTCC-CCT-GGAGCCATTACCACTGGCCATGGAGCAC-CCATTGGCATCAA
droAna3	scaffold_13337:18616759-18617150 -		AAGC---TCTGCAATCTTTATGTTTATGTTTTTGC----C---AAAAAAGACCCCAC-----AGATTAG----------------------CAACAAAAATAAAAAATCAAAAAATAAAACTGTCCAA--AAGCCAAAAATAAG-AATTATCACTGGG-GA---CCGGGGACGATAAGATTAGAGGACACTTTGAA--CCGA----CATTATATAAGAGAATATATATTA-GAGAAT--------TGCACTTTGCAACCAGAA----------------------CAGGCC-------------------------AAGTGTCTTACGTAATTTATT-TGT-----TT--TTTAAA-AATATATATATT---A--AAT---CC-ATTAAAAAATT-AAATAAAAACATGACATT------------------------------------------------------TTAATGGCTTT-----TCAGAACA--------------------------------------------------------ATT-ATTTAATTAAAAAAGTATC--------T-CA--ATTTTTTAGGTTTCT-CCG-GGAGTTGTTACCACCGGACATGGAGCGC-CCATTGGCATCAA
droBip1	scf7180000396741:1804328-1804727 -		AAGC---TCTGCAATCTTTATGTTTATGTTTTTGC----C---AAAAAAGAACCCAC-----AGATTAG----------------------TAACA----AA--------AAAAATAAAACTGTCCAA--GCCCCAAAAATAAGAAATTATCACCAAACAG---G-----ACGATAAGATTAGACGACACTTTGAA--CTGG----AATTATATAAGAAAAA--ATATTA-GAGAAT--------TGCACTTTGCAACCAAGA----------------------CCGGC--------------------------AAGCGACTTACGTAACTTATTTTGT-----TT--TTAAAG-AAA-----------------ACAGCA-ATTATAAAATT-AAATTAAAGCATGACATTTTAAAACAAAATATGGGGGCCAGTCAGTAAT-------------AG---CCAATTA---AGCTTT-----TAAGCTTT--------------------------------------------------------AAT-TTTTAATCAAAAA-ATACA--------TTTA---TTTTTCAGGTTTCA-CCA-GGAGTTGTTACCACCGGTCACGGTGCAC-CCATTGGCATCAA
dp5	XR_group6:4139671-4139982 -		AGTG---CCTGCAATCTTTATGTTTATGTTTTC-G----TGCCGA----ATGCCGGGTGCCGGGCACACACACACACACACCTACCTTTCTAAAC------A--------AAATACGAAA--GTCCGC--TCCCAAAAA-TAAG-TATTAGAGCGATAAGGGGAT-----TAGATAAGATTGGGCAGCGGGATGGA---TGG----GAT---------------------------------------ACTTTGAG-CA-CCGA------------------------------AATGGCATTCGGTTATGCAACCGA--------------------------------------AA--AGAG--ATAGAGA---AA-------CA----------------------------------------------GAGAAT--TGCA--------------------------------ACTAACA---------------------------------------------------------AAGACTGGAATT--------------------GC-TT-------TCGTTTCAGGTGTCG-CCG-GGATCGATCACCACTGGACATGGATCGC-CGATTGGCATCAA
droPer2	scaffold_9:2429383-2429473 -		CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAACA---------------------------------------------------------AAGACTGGAA--------------------TTGC-TT-------TCGTTTCAGGTGTCAGCCGTGGATCGATCACCACTGGACATGGATCGCTCGATTGGCATCAA
droWil2	scf2_1100000004762:1688239-1688367 +		A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTAGATGACATTTTGAA--CTTGAAACGTTTATATAATCGAGA----GTT-----------------GTTTTT-----------------------------------------------------------------------------------TT-TGT-----TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------T-GGTTTC--GT--TTCGGACAGGTGGCA-CCG-GGAGCAATTACCACTGGACACGGTGCTC-CAATTGGCATTAA
droVir3	scaffold_13049:18116310-18116378 -		CAAT---TGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----CT--TCTTTGCAGGAATGT-CCG-GGCGTAGTTACGACGGGCAGCGGTGCAC-CCATTGGCATCAA
droMoj3	scaffold_6680:23689595-23689757 -		AAAAAATTAGGTAATC-----------------------------------------------------------------------------------------------------------------------G-----------------------------------AGATAAAATTAAGAACCAAAACA---------------------------------------------------------------------------------------------AGTCGAGAAAGACGTTGTATTA--------------------------TA-TGT-----TC----------------------------------------------------------------------------------------ATC--TAAA-------------------------------------------------------------------------------ATAAAAATC--------TAGAATTAATAT------------------T-TCTT----TT--TGTTGGTAGGAATCC-GCA-GGCGTAGTTACTACTGGCAGTGGCGCAC-CCATTGGCATTAA
droGri2	scaffold_15110:24170798-24170910 -		AGAT---TTATTATACTTTGAACTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTCTTAAACGTG--TA------------------A-CATT----TGCTCACTTGCAGGAGAGT-CCG-GGTGTAATTACCACTGGCAGTGGTGCAC-CAATAGGCATTAA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACGC---TCTGCAATCTTTATGTTTATGTTTTC-T----TGGCGA----AAACCGAG-----AGATT---------------------------------------------AAATGAAA--GTCCGC--GGCCCAAAA--AAG-AATTATCGCAATA-GA---C-----CCGATAAGATTGGACGACACTT-GAA--CCAA----TATAATAGAGCAGAAA----GTT----GCAT--------AGCACCTTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAAAACATCTGATTAAACTTGACTT------------------T-CATT----TG--CTTTTGCAGGTTTCT-CCA-GGTGCCATTACCACCGGCAATGGAGCAC-CCATTGGAATCAA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCACCGGCAATGGAGC................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTACCACCGGCAATGGA..................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................AATTATCGCAATA-GA---C-----CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................C-----CCGATAAGATTGGACGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACGC---TCTGCAATCTTTATGTTTATGTTTTT-T----TGGCGA----AAACCGAG-----AGATT---------------------------------------------AAATGAAA--GTCCGC--GGCCCAAAA--AAG-AATTATCGCAATA-GA---C-----CCGATAAGATTGGACGACACTT-GAA--CCCA----TATAATAGAGCAGAAA----GTT----GAAT--------AGTACCTTGAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTAAAATACATCTGATTAAACTTGACTT------------------T-CATT----TG--CTTTTGCAGGTTTCT-CCA-GGTGCCATTACCACCGGCAATGGAGCAC-CCATTGGAATCAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACCGGCAATGGAGC................	18	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTACCACCGGCAATGGAGC................	21	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTACCACCGGCAATGGAGCAC-.............	23	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCATTACCACCGGCAATGGAGCAC-CC...........	29	1	1.00	1	0	0	0	1

dm3

ACGC---TCTGCAATCTTTATGTTAATGTTTTTTTCTTTTGGTGA----AAATCGAA-----TGATT---------------------------------------------AAATGAAA--GTCCGC--GGGCCAAAA--ATG-AATTATCGCAATA-GG---C-----CCGATAAGATTGTAAGACACTT-GAA--CCAA----TATATTGTTGCTGAAT----GTT----GCAT--------AGCATTTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA-------------------------------------------------------------------------------ATTAAAATACATTTGATTAAACTTGACTT------------------T-CATT----TG--CTTTTGCAGGTTTCT-CCT-GGTGCCATTACCACCGGCAATGGAGCAC-CCATTGGAATCAA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCACCGGCAATGGAGCAC-CC...........	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACCACCGGCAATGGAGC................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGCAATGGAGCAC-CC...........	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCACCGGCAATGGAGC................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACCGGCAATGGAGCAC-C............	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................T---------------------------------------------AAATGAAA--GTCCGC--GGGCCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGCAATGGAGCAC-CCG..........	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCAATGGAGCAC-CCATT........	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTACCACCGGCAATGGAGT................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..........................................................................................................................................A--ATG-AATTATCGCAATA-GG---C-----CC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droEre2

ACGC---TTTGCAATCTTTATGTTTATGTTTTTT------GGCGA-----AACCCAA-----AGATTA--------------------------------------------AAATGAAA--GTCCGC--TGCCCAAAA--AAG-AATTATCGCA-TA-GA---C-----CTGATAAGATGGGACGACACTT-GAA--CTAA----CATTTTAGAGCAGAAA----GTTA-TGGAAT--------TGCCCTGTGCATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGCT--TGAA-------------------------------------------------------------------------------ATTAAAATAAAATGCATTAAAA------A------------------T-CATT----TA--TATTTGCAGGTTCCT-CCA-GGTGCCATTACCACCGGTAATGGAGCAC-CCATTGGAATCAA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGTAATGGAGCAC-CCATTG.......	23	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................G-AATTATCGCA-TA-GA---C-----CTGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................GTTA-TGGAAT--------TGCCCTGTGC........................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACCGGTAATGGAGCAC-CCATTG.......	26	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACCGGTAATGGAGCAC-CCATTGGA.....	28	1	1.00	1	0	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACCGGTAATGGAGCAC-CCATTGG......	27	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGTAATGGAGCAC-CCATTGGA.....	25	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCGGTAATGGAGCAC-CCATTG.......	25	1	1.00	1	0	0	0	0	1	0	0

droYak3

ACGC---TGTGCAATCTTTATGTTTATGTTTTTT------GGCGA----AAACCCAA-----GGTTT---------------------------------------------AAATGAAA--GTCCGC--TGCCGAAAA--AAG-AATTATCGCAATA-GA---G-----CTGATAAGATTGCACGACACTT-GAA--CTAA----CATTTTAGTGCACAAA----GTTA-AGAAAGTTAAGTTATGCCCTGTGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGCACCT--TGAA-------------------------------------------------------------------------------ATTAAAACGAAATTCATTAAACTTGACTT------------------T-CATT----TA--TGTTGGCAGGTTTCT-CCA-GGTGCCATCACCACGGGCAATGGAGCAC-CCATTGGAATCAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACCACGGGCAATGGAGC................	21	1	10.00	10	0	0	1	0	0	0	9	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCACCACGGGCAATGGAGCAC-CCATT........	28	1	3.00	3	0	1	0	0	0	0	2	0	0	0	0
.................TTATGTTTATGTTTTTT------GGCGA----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-CCA-GGTGCCATCACCACGGGC........................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGGCAATGGAGCAC-CCATTGGAAT...	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................TTTAGTGCACAAA----GTTA-AGAAAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................ATTATCGCAATA-GA---G-----CTGATAAGATTGCAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGACTT------------------T-CATT----TA--TGTTGGCAG.....................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGGGCAATGGAGCAC-CCATTGGAAT...	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCACGGGCAATGGAGCA...............	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

AAGC---TGTGCAATCTTTATGTTTATGTTTTTCT----CGG-------CGGCCCAG-----CGATTAT----------------------AAAT------A--------AAAATTTAAA--GTCCGC--ACCCCAA-A--AAG-TATTATCGCTAAA-GC---A-----ACGATTAGATTAGACGGCACTTTAAA--CTGG----TATTATATAAGAAAAA----GTTG-GGGAAG--------TGCACTTTGCAACCAGAGTTACCA---------------------------------------------------------------------------------------------------------------------------------------------CATT------------------------------------------------------TTAAAGGCAACTT----------------------------------------------------------AAT-GAAT--ATTT------------------T-CCCT----TT--TACTTACAGATTTCG-CCG-GGAGCCATTACCACTGGTCATGGAGCCC-CCATTGGCATCAA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AACC---TCCGCAATCTTTATGTTTATTTTTTCTG----CGG-------GAGGCCAA-----AGATTAT----------------------AA-T------A--------ACAAATGAAA--GTCCGC--CGCCCAAAA--AAG-AATTATCGCTTAA-GC---A-----CATATAAGATTAAGCGACATTTCGAAAAATAA----TATTATATAAGA---------------AGAT--------TGTACTTTGCAGCCATGGTTACTAATATGTAACAATATTTAATAC--------------------------AA--------------------------------------AA--A------------------------------------------------------------------TGTGTTGCAAGT--TGCA--------------------------------ATT-ACA--AATACTGA--AAATG---------------------------------GCTTGAATTGACCCAATTT------------------C-CCTT----TA--CCTTTGCAGGTTTCA-CCG-GGAGCCATTACCACTGGTCATGGGGCAC-CCATCGGAATCAA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAGC---TGTGCAATCTTTATGTTTATGTTTTTCG----TGG-------CAGCCCAA-----AGATTAT----------------------AAAT------A--------AAAATTTAAA--GTCCGC--AGCCCAAAA--AAG-AATTATCGCTTAA-GT---G-----CCGATAAGATTAGACGACACTTTGAA--CTGA----TATTATATAACGAAAA----GTTA-GGAAAC--------TGCACTTTGAAGCA-CGGTTACTAATTTTTACCAATTATTCAGGC--------------------------AA--------------------------------------AA--AAATTA---ATTA---AA---TTAATT----------------------------------------TGGTTTATAGTT--CGAAA-------TTATAAG---------------CAACTTA---------------------------------------------------------AGTTGACTTGAT--------------------TTGA-TT---TA---TTTTTCAGGTTTCA-CCG-GGCGCCATTACCACAGGCCATGGAGCAC-CTATTGGAATCAA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAGC---TCTGCAATCTTTATGTTTATGTTTTTCG----TGG-------CAGCCCAA-----CGATTAT----------------------AAATT----AA--------AAAAATTAAA--GTCCGC--ACCCCAAAA--AAG-AATTATCGCTAAC-GA---A-----CCGATAAGATTAGGCGACACTTTAAA--CCGG----CATTATATAACGAAAA----TCTA-GGAAAT--------TGCACTTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAGC---TCGGCAATCTTTATGTTTATGTTTTTCG----TGG-------GCTGTC-A-----CGATTATACAT--------------------ATA----TA--------AAAAATGAAA--GTCCGC--ACCCCAAAA--AAG-AATTATCGCTAAA-GT---G-----CCGATAAGATTAGGCGACACGTTAAA--CAGG----CATTATATAAGAAAGA----GGTA-TTGGAT--------TGCACTTTGCAACTACGTTTACT-----------------------------------------------------------------TATT-TGAAAACTT-------------------ATT---A--AAACA--A-ATAATAAAATTCTAATTAAAAAATGTGATT-------AAAATGTGTGTTTCAGTT--TAAA-------------AT---TAAATTA---AA-TTT-----TAAACTTTGACCAGATGTTTTGAAGTGCAAAAATAAAAAC---CAAACTA-----AATTT--CCGGT--------------------TTGC-TCC--AA--TTTTTAAAGGTTTCG-CCG-GGAGCGATCACCACTGGCCATGGAGCCC-CAATTGGTATCAA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAGC---CGTGCAATCTTTATGTTTATGTTTTTCG----TGG-------CAGCCCGG-----CGATTAT----------------------AACA------A--------AGGAATGAAA--GTCCGC--AGCCCAAAA--AAG-AATTATCGCCTAA-GC---G-----CAGATAAGATTAGAGGACTTTTCGGA--CTTG----CATTATATAACAAAAA----GTTA-CGGTGT--------TGCACTTTGCAACT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAGT---CCTACAATCTTTATGTTTATGTTTTTGG----TGGTGA--CAGCGTCCAT-----AGATTAT----------------------AAATA----TG--------AAATATGAAA--GTCCGCAAGACCAAAAA--AAG-AATTATCGCCTAAAGC---T-----TCGATAAGATTAGGCGACACTTTGAA--CTGGTAA-TATTATATAACGAAAA--AAGTAAGTAGAAT--------TGCACTTTGCAACGT-AG----------------------CCGGTA-------------------------AAGTTTTT--C----TTTATT-TGT-----ATAATTTAAAAA--AAATGA---ATTAGTAAA---CC-ATT----------------------------------------TGCTTGGTAACT--TGAAAAGTTGCATTAAAAGGTCACAACTAAGTTGTTTT-----T-------------------------------------------------------------TTTATTT------------------T-AT-T--T-TC--TTTTCTCAGGTCTCC-CCT-GGAGCCATTACCACTGGCCATGGAGCAC-CCATTGGCATCAA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AAGC---TCTGCAATCTTTATGTTTATGTTTTTGC----C---AAAAAAGACCCCAC-----AGATTAG----------------------CAACAAAAATAAAAAATCAAAAAATAAAACTGTCCAA--AAGCCAAAAATAAG-AATTATCACTGGG-GA---CCGGGGACGATAAGATTAGAGGACACTTTGAA--CCGA----CATTATATAAGAGAATATATATTA-GAGAAT--------TGCACTTTGCAACCAGAA----------------------CAGGCC-------------------------AAGTGTCTTACGTAATTTATT-TGT-----TT--TTTAAA-AATATATATATT---A--AAT---CC-ATTAAAAAATT-AAATAAAAACATGACATT------------------------------------------------------TTAATGGCTTT-----TCAGAACA--------------------------------------------------------ATT-ATTTAATTAAAAAAGTATC--------T-CA--ATTTTTTAGGTTTCT-CCG-GGAGTTGTTACCACCGGACATGGAGCGC-CCATTGGCATCAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTACCACCGGACATGGAGC................	23	1	8.00	8	1	0	0	0	7	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCACCGGACATGGAGC................	20	1	2.00	2	0	0	0	0	2	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGC-CCATTGGC.....	21	1	2.00	2	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTGTTACCACCGGACATGGAGC................	25	1	2.00	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTACCACCGGACATGGAGCGC-C............	26	1	2.00	2	0	0	0	0	2	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTACCACCGGACATGGAGCGC-CC...........	24	1	2.00	2	0	0	0	0	2	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTACCACCGGACATGGAGCGC-.............	25	1	2.00	2	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................CTTACGTAATTTATT-TGT-----T............................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTACCACCGGACATGGAGC................	22	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGGACATGGAGCGC-CCATTGGC.....	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACCGGACATGGAGCGC-CCATT........	25	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGTTGTTACCACCGGACAT.....................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTACCACCGGACATGGAGCGC-.............	24	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGGACATGGAGCGC-CCAT.........	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACCACCGGACATGGAGC................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCACCGGACATGGAGCGC-CCATTGG......	27	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCACCGGACATGGAGCGC-CC...........	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTACCACCGGACATGGAG.................	22	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGAGCGC-CCATTGGCAT...	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGGAGCGC-CCATTGGC.....	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTACCACCGGACATGGAGCGC-CC...........	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................GAGGACACTTTGAA--CCGA----CATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCT-CCG-GGAGTTGTTACCACC...........................	22	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTACCACCGGACATGG...................	19	1	1.00	1	1	0	0	0	0	0

droBip1

AAGC---TCTGCAATCTTTATGTTTATGTTTTTGC----C---AAAAAAGAACCCAC-----AGATTAG----------------------TAACA----AA--------AAAAATAAAACTGTCCAA--GCCCCAAAAATAAGAAATTATCACCAAACAG---G-----ACGATAAGATTAGACGACACTTTGAA--CTGG----AATTATATAAGAAAAA--ATATTA-GAGAAT--------TGCACTTTGCAACCAAGA----------------------CCGGC--------------------------AAGCGACTTACGTAACTTATTTTGT-----TT--TTAAAG-AAA-----------------ACAGCA-ATTATAAAATT-AAATTAAAGCATGACATTTTAAAACAAAATATGGGGGCCAGTCAGTAAT-------------AG---CCAATTA---AGCTTT-----TAAGCTTT--------------------------------------------------------AAT-TTTTAATCAAAAA-ATACA--------TTTA---TTTTTCAGGTTTCA-CCA-GGAGTTGTTACCACCGGTCACGGTGCAC-CCATTGGCATCAA	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGTG---CCTGCAATCTTTATGTTTATGTTTTC-G----TGCCGA----ATGCCGGGTGCCGGGCACACACACACACACACCTACCTTTCTAAAC------A--------AAATACGAAA--GTCCGC--TCCCAAAAA-TAAG-TATTAGAGCGATAAGGGGAT-----TAGATAAGATTGGGCAGCGGGATGGA---TGG----GAT---------------------------------------ACTTTGAG-CA-CCGA------------------------------AATGGCATTCGGTTATGCAACCGA--------------------------------------AA--AGAG--ATAGAGA---AA-------CA----------------------------------------------GAGAAT--TGCA--------------------------------ACTAACA---------------------------------------------------------AAGACTGGAATT--------------------GC-TT-------TCGTTTCAGGTGTCG-CCG-GGATCGATCACCACTGGACATGGATCGC-CGATTGGCATCAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGC-CGATTGGC.....	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACTGGACATGGATCGC-C............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATCGATCACCACTGGAC.......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCG-GGATCGATCACCACTG..........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCACTGGACATGGATCGC-CGATT........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCG-CCG-GGATCGATCACCACTGGACATG....................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACATGGATCGC-CGATTGGC.....	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGACATGGATCGC-CGATTGGC.....	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACTGGACATGGATCG...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTGGACATGGATCGC-CGATTGGCAT...	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCG-CCG-GGATCGATCACCACTGG.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACATGGATCGC-CGATTGGCA....	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATGGATCGC-CGATTGGCATC..	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACTGGACATGGATCGC-CGATTGGC.....	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGACATGGATCGC-CGATTGGCAT...	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTAACA---------------------------------------------------------AAGACTGGAA--------------------TTGC-TT-------TCGTTTCAGGTGTCAGCCGTGGATCGATCACCACTGGACATGGATCGCTCGATTGGCATCAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACTGGACATGGATCGCC.............	21	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGATCACCACTGGAC.......................	18	1	1.00	1	1	0	0	0	0	0

droWil2

A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTAGATGACATTTTGAA--CTTGAAACGTTTATATAATCGAGA----GTT-----------------GTTTTT-----------------------------------------------------------------------------------TT-TGT-----TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T------------------T-GGTTTC--GT--TTCGGACAGGTGGCA-CCG-GGAGCAATTACCACTGGACACGGTGCTC-CAATTGGCATTAA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAATTACCACTGGACACGGTGCTC-.............	24	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGGTGCTC-CAATTGGC.....	18	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACACGGTGCTC-CAATTG.......	20	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-GGAGCAATTACCACTGGACAC.....................	23	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACACGGTGCTC-CAATTGGCA....	25	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACTGGACACGGTGCTC-CA...........	19	1	1.00	1	1	0	0	0	0

droVir3

CAAT---TGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----CT--TCTTTGCAGGAATGT-CCG-GGCGTAGTTACGACGGGCAGCGGTGCAC-CCATTGGCATCAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGT-CCG-GGCGTAGTTACGACG...........................	24	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGT-CCG-GGCGTAGTTACGAC............................	22	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-CCG-GGCGTAGTTACGACGGGC........................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGACGGGCAGCGGTGCAC-CCATTGGC.....	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGT-CCG-GGCGTAGTTACGACGGGC........................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGACGGGCAGCGGTGCAT-.............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-CCG-GGCGTAGTTACGACGGGC........................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATGT-CCG-GGCGTAGTTACG..............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-CCG-GGCGTAGTTACGAC............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-CCG-GGCGTAGTTACGA.............................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTAGTTACGACGGGC........................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGT-CCG-GGCGTAGTTACGACG...........................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAATGT-CCG-GGCGTAGTT.................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCAGGAATGT-CCG-GGC.......................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-GGCGTAGTTACGACGGGC........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTTACGACGGGCAGCGGTGCAC-C............	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGT-CCG-GGCGTAGTTACGAC............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAAAAATTAGGTAATC-----------------------------------------------------------------------------------------------------------------------G-----------------------------------AGATAAAATTAAGAACCAAAACA---------------------------------------------------------------------------------------------AGTCGAGAAAGACGTTGTATTA--------------------------TA-TGT-----TC----------------------------------------------------------------------------------------ATC--TAAA-------------------------------------------------------------------------------ATAAAAATC--------TAGAATTAATAT------------------T-TCTT----TT--TGTTGGTAGGAATCC-GCA-GGCGTAGTTACTACTGGCAGTGGCGCAC-CCATTGGCATTAA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GGCGTAGTTACTACTGGC........................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACTACTGGCAGTGGCGCAC-C............	24	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-GGCGTAGTTACTACTGGC........................	20	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATCC-GCA-GGCGTAGTTA................................	19	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTACTACTGGCAGTGGCGC................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGTAGTTACTACTGGCA.......................	19	1	1.00	1	1	0	0	0	0	0

droGri2

AGAT---TTATTATACTTTGAACTCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACCTTCTTAAACGTG--TA------------------A-CATT----TGCTCACTTGCAGGAGAGT-CCG-GGTGTAATTACCACTGGCAGTGGTGCAC-CAATAGGCATTAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTAATTACCACTGGCAGTGGTG.................	24	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGTGGTGCAC-CAATAGGCA....	21	1	1.00	1	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTGCAC-CAATAGGCA....	18	1	1.00	1	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTACCACTGGCAGTGGTGCA...............	22	1	1.00	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGTGGTGCAC-CAATAGG......	20	1	1.00	1	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAATTACCACTGGCAGTGGTGCAC-C............	27	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGCAGTGGTGCAC-CAATAGGC.....	24	1	1.00	1	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGT-CCG-GGTGTAATT.................................	18	1	1.00	1	1	0

dsi_9926

3l:18438395-18438544 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-21.7	-21.4	-21.3