ID:

dsi_9923

 Coordinate:

2r:14283515-14283664 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.0 -4.9 -4.9 -4.8

Flybase annnotation

three_prime_UTR [2r_14283001_14284156_-]; exon [2r_14283001_14284867_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
GGAGCACACATTATTCGATTAGCTATAGTTTCGAACGATCTATGAGAGGAGGAGCGCGTTGCAACCGCAAATCAAATAGCTAAACTTTATAAATGTTGTCTAGTAGAATTGAACATTTTATATCGATATGCAAACCACTAGCAACCTATTAACCAAAATACCCGACATTATATAGTTGTGCTTTCCATTAAATGTTTCAGTGTGCAAATGGCACGCATCCACGCGCGAAAAATCGCAAACATCCGAGCAT
************************************************************************************************.((...(((.(((((...........(((.(((.........(((....))).........)))..))).......))))).))).....))************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 M024
male body		 M023
head
 SRR902008
ovaries
 M053
female body
 O001
Testis
 M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
................................................................................................TGTCTAGTAGAATTGAACATTTTATA................................................................................................................................ 26 0 1 10.00 10 6 4 0 0 0 0 0 0 0 0 0 0
.............................................................................................TGTTGTCTAGTAGAATTGAAC........................................................................................................................................ 21 0 1 4.00 4 0 0 0 0 1 3 0 0 0 0 0 0
.............................................................................................TGTTGTCTAGTAGAATTGAACATTT.................................................................................................................................... 25 0 1 4.00 4 2 1 0 1 0 0 0 0 0 0 0 0
........................................TACGAGAGGAGGAGCGCGTTGCAGC......................................................................................................................................................................................... 25 2 1 3.00 3 1 0 0 0 0 0 2 0 0 0 0 0
................................................................................................TGTCTAGTAGAATTGAACATTTTATATCGA............................................................................................................................ 30 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
.......................TATAGTTTCGAACGATCTACGAGAGGA........................................................................................................................................................................................................ 27 1 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATAAATGTTGTCTAGTAGAATTGAACA....................................................................................................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................AACGATCTACGAGAGGAGGAGCGCGT............................................................................................................................................................................................... 26 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...............CGATTAGCTATAGTTTCGAACGATCA................................................................................................................................................................................................................. 26 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................TATAAATGTTGTCTAGTAGA............................................................................................................................................... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
..................TTAGCTATAGTTTCGAACGATCTATGA............................................................................................................................................................................................................. 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0 0 0
........................................................................................ATAAATGTTGTCTAGTAGAATTGAAC........................................................................................................................................ 26 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
...............CGATTAGCTATAGTTTCGAACGATC.................................................................................................................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
......................................................................................TTATAAATGTTGTCTAGTAGAATTGAA......................................................................................................................................... 27 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................TATAAATGTTGTCTAGTAGAATTGAA......................................................................................................................................... 26 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................TGTTGTCTAGTAGAATTGAACATTTTA.................................................................................................................................. 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
...................TAGCTATAGTTTCGAACGATCTAC............................................................................................................................................................................................................... 24 1 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
..................TTAGCTATAGTTTCGAACGATCTACGA............................................................................................................................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................TTATATAGTTGTGCTTTCCAT.............................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..................................ACGATCTATGAGAGGAGGAGC................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................TAGAATTGAACATTTTATATCGATA.......................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................GTCTAGTAGAATTGAACATTTTATATCGA............................................................................................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................CTAGTAGAATTGAACATTTT................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................TCGAACGATCTATGAGAGGAG....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................TAGTAGAATTGAACATTTTAT................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....CACACATTATTCGATTAGCT.................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
............................TTTCGAACGATCTACGAGAGGAGGAG.................................................................................................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................CTAGTAGAATTGAACATTTTATATCGAT........................................................................................................................... 28 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.........................................................................................TAAATGTTGTCTAGTAGAATT............................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................TCGAACGATCTACGAGAGGAGGAGCGCGT............................................................................................................................................................................................... 29 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................AACTTTATAAATGTTGTCTAGTAGAA.............................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.......................TATAGTTTCGAACGATCTATGAGA........................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................TATAAATGTTGTCTAGTAGAATTGA.......................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................TAGTTTCGAACGATCTATGAGAGGA........................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................TAAATGTTGTCTAGTAGA............................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................GATATGCAAACCACTAGCAAC......................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...................TAGCTATAGTTTCGAACGATCTATGA............................................................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................AGTAGAATTGAACATTTTA.................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................TATAAATGTTGTCTAGTAGAATTGAAC........................................................................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................TATAGTTTCGAACGATCTATGAGAGGA........................................................................................................................................................................................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTTATAAATGTTGTCTAGTAGAATT............................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................TTCGAACGATCTACGAGAGGAGGAGCGC................................................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................TCGATATGCAAACCACTAGCAACCTAT..................................................................................................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................TGTGGTCTAGTAGAATTGAACAT...................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................TTTATATCGATATGCAAACCACTAGCAA.......................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................AGCTATAGTTTCTAACGCTCTATGAGAG.......................................................................................................................................................................................................... 28 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.............................TTCGAACGATCTATGAGAGGAGGAGC................................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................TCTACGAGAGGAGGAGCGCGTTGCAGC......................................................................................................................................................................................... 27 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................................................................TTGTCTAGTAGAATTGAACATTTTA.................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAGCAATCTATTAACCAAAATACCCGA..................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................TGTCTAGTAGAATTGAACATTTCATA................................................................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................TTTATAAATGTTGTCTAGTAGAATTGAACA....................................................................................................................................... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................TAGTAGAATTGAACATTTTA.................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...........TGTTCGATTGGCTATAGTTTCG......................................................................................................................................................................................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................TTATAAATGTTGTCTAGTAGAATTGAAC........................................................................................................................................ 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................TATTAACCAAAATACCCGACATTAA............................................................................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.GAGCACACATTGTTCGATTGG.................................................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.......................TATAGTTTCGAACGATCTACGAGAGG......................................................................................................................................................................................................... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................AATGTTGTCTAGTAGAATTGA.......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................TTATAAATGTTGTCTAGTAGAATTGAACA....................................................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................ATTAGCTATAGTTTCGAACGA.................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TTATATCGATATGCAAACCAC................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................AAATGGCACGCATCCACGCGCGAAAAA.................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................................................AGGAGCGCGTTGCAACCGCAA.................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................CGATCTATGAGAGGAGGAGC................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................ATCTACGAGAGGAGGAGCGCGTTG............................................................................................................................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.....................................................GCGCGTTGATACCGCAAA................................................................................................................................................................................... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................TGTAGAATTGGACATATTATA................................................................................................................................ 21 3 4 0.25 1 0 0 0 0 0 0 0 0 0 0 0 1
....................................GCTCTGTGAGAGGAGGA..................................................................................................................................................................................................... 17 2 10 0.10 1 0 0 0 0 0 0 0 0 0 0 0 1
...............................................................................................TTGACTAGTAGAATTGT.......................................................................................................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 0 0 0 1
............................................................................................ATGTGTTCTAGTAGAAT............................................................................................................................................. 17 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCTCGTGTGTAATAAGCTAATCGATATCAAAGCTTGCTAGATACTCTCCTCCTCGCGCAACGTTGGCGTTTAGTTTATCGATTTGAAATATTTACAACAGATCATCTTAACTTGTAAAATATAGCTATACGTTTGGTGATCGTTGGATAATTGGTTTTATGGGCTGTAATATATCAACACGAAAGGTAATTTACAAAGTCACACGTTTACCGTGCGTAGGTGCGCGCTTTTTAGCGTTTGTAGGCTCGTA
**************************************************************.((...(((.(((((...........(((.(((.........(((....))).........)))..))).......))))).))).....))************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 O002
Head
 M025
embryo
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................................................................TGGGCTGTAATATATCAACAC...................................................................... 21 0 1 5.00 5 1 3 0 0 1 0 0 0 0 0 0
..........................TCAAAGCTTGCTAGATACTCT........................................................................................................................................................................................................... 21 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0 0
..........................TCAAAGCTTGCTAGATACTC............................................................................................................................................................................................................ 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0
....................................................TCGCGCAACGTTGGCGTTTAG................................................................................................................................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................AGGTAATTTACAAAGTCACAC.............................................. 21 0 1 2.00 2 0 0 0 1 0 0 0 0 1 0 0
....................TCGATATCAAAGCTTGCTAGATA............................................................................................................................................................................................................... 23 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................................TGGATAATTGGTGTT............................................................................................ 15 1 10 1.40 14 0 0 0 0 0 0 14 0 0 0 0
.................................CTGCTAGATACTCTCCTCCTC.................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................AGCTTGCTAGATGCTCTCCTC....................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
......................GATATCAAAGCTTGCTAGAT................................................................................................................................................................................................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GTTGGATAATTGGTTTTATGG........................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................CGAAAGGTAATTTACAAAGT................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GCTTTTTAGCGTTTGTAGGCT.... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..............................AGCTTGCTAGATACTCTCCTC....................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................ATCAAAGCTTGCTAGATACTC............................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.CTCGTGTGTAATAAGCTAATC.................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................TTTTGTGGGCTGTAACATATC........................................................................... 21 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................GGGGCTGTAATATATCAACAC...................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CGCTTTTTAGCGTTTGTAGGC..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................TTAACTTGTAAAATATAGCT............................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................GTGCGTAGGTGCGCGCTTTTTAGCGT............. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
..................................................................................................AGATCATCTTAACTTGTA...................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................TTGGTGATCGTTGGATAATTG................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................TCAAAGCTTGCTAGATACT............................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................GCTATACGTTTGGTGATCG............................................................................................................ 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................TATAGCTATACGTTTGGTGA............................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTTTACCGTGCGTAGGTG............................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................AAAATATAGCTATACGAT..................................................................................................................... 18 1 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0
....................................TTAGATACTCTCGTCCTCGA.................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
.....................................................CGCGCAACTATGGCGTT.................................................................................................................................................................................... 17 2 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0
...................................................CCCGCGCAACTATGGCGTT.................................................................................................................................................................................... 19 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................AAGTAAGACGTTTTCCGTGC................................... 20 3 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................GTTTGGTGAGCGTCGGTTAAT................................................................................................... 21 3 20 0.10 2 0 0 0 0 0 0 0 2 0 0 0
..........................................................................................................................................ATTGTTGGATTATTTGTTTTAT.......................................................................................... 22 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1
........................................................AAAACGTTGGCATTTAGTTTA............................................................................................................................................................................. 21 3 17 0.06 1 0 0 0 0 0 0 0 0 0 0 1
.............................................................................................................................................GATGGATAATTGGTGTT............................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:14283465-14283714 - dsi_9923 GGAGCACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCTA-----TGAGAG--GAGGAG------CGCGTTGCAACCGCAAATCAAATA------------GC--T------------------A---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAACCA--------------------------------------CTAGCAACCTATTAACCAAAATA-----CCC--GACA---------------------------------TTATATAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCAT-CCACGC------------GCGAAAAATC-GCA-AA-CATC---CG-----AGCAT
droSec2 scaffold_1:11090304-11090553 - GGAGCACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCTA-----TGAGAG--GAGGAA------CGCGTTGCAGTCGCAAATCAAATA------------GC--T------------------A---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAACCA--------------------------------------CTAGCAACCTATTAACCAAAATA-----CCC--GACA---------------------------------TTATATAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCAT-CCACGC------------GCGAAAAATC-GCA-AA-CATC---AG-----AGCAT
dm3 chr2R:13591285-13591538 - GGAGCACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCTA-----TGCGTG--GAGGAA------CACGTTGCAACCGCAAATCAAATA------------GA--T------------------A---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAACCAC----------------------------------TAACTAGCAACCTATTAACCGAAATA-----CCC--G------------------------------------AATTATAGTTGTGCTTTCTTCCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCAA-CCACGC------------ACGAAAAATC-GAA-AA-CATC---TG-----AATAT
droEre2 scaffold_4845:7820023-7820265 - GGAGCACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTTAAACGATCTA-----TAA-----GAGGGA------CACGTTGAAACCGCAAATCAAATA------------AC--T------------------A---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAAC---------------------------------------ACTAGCAACCTATTAACCAAAATA-----CC--AGG-----------------------------------CATTTTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCCT-CCACAC------------GCGAGA-ATC-GAA-AA-CAAC---CA-----AGCAT
droYak3 2R:15589785-15590030 + GGAGCACA------------TTATTTGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTTAAACGATCTA-----TAA-----GAGGGA------CACGTTGAAACCGCAAATCAAATA------------AT--AG---------------CTA---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAAC---------------------------------------ACTAGCAACCTATTAACCAAAATA-----CC--AGG-----------------------------------CATTTTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCGT-CCACAC------------GCGAAAAATCCAAA-AA-CATC---CA-----AGCAT
droEug1 scf7180000409672:1515433-1515693 + GGAGCCCATC----------TTTTTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCAAGCGATCTGAGTA-GAA-----GAGGAGCAGTAGCAGGTTGAAACCGCAAATCAAATG------------AT--TA---------------C--A-------AAACTTTATAAATGTTGTCTA-------GTAGAA------GTGAACATTTT-----ATATCG---AAATCTAAACTAG----------------------------------ACTCTAGCCATCTATTAGCCATAATA-----ACCCAGC-----------------------------------CATTCTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCCATCG-GCATGCAC-CCACAC------------TCGAAGAA-----A-AACCTTC---TA-----AGCAT
droBia1 scf7180000301754:2987267-2987497 + GCAGCACCTT----------TAATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAGCGGTCTA-----GGA-----GAGGAG------CAGGTGGAAACCGCAAATCAAATG------------AT--TA---------------C--A-------AAACTTTATAAATGTTGTCTA-------GTAGAA------ACGAACATTTT-----ATATCG---ATATCTATACTAG----------------------------------ACTCTAGCGATCTATTAGCC---------------AGT-----------------------------------CATTCTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGCGTGCAAATG-GCACGCAC-CCACAC------------TCGAGATA------------------------AGGAG
droTak1 scf7180000415138:124038-124273 + GGAGCACATA----------TTATTTGACTA---------------------------------------------------------------------------------------------CGATCTA-----AAA-----GAGGAG------CAGGTTCAAACCGCAAATCAAATA------------GT--AA---------------C-A---------AACTTTATAAATGTTGTCTA-------GTAGAA------ATGAACATTTT-----ATATCG---ATATCTATACTAG----------------------------------ACTCTAGCAATCTATTAACCATACTA-----CCC-AGC-----------------------------------CATTCTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAAAG-GCACGCAC-CCGCAC------------TCGAAATA--A-AA-AA-ATCT---TA-----AGCAT
droEle1 scf7180000491214:666381-666640 + GGAGCACATA----------TTATTTGATTA-----------------G--------------------------------------------------------C----TCTCTAGTTTTAAACGATCCA-----AAAGA---GAGGAG------CAGGTCGAAACCGCAAATCAAATACT---ATA----AT--AG---------------C--------AAAAACTTTATAAATGTTGTCTA-------GTAGAA------ATGAAC-TTTT-----GTATCG---ATATCTAAACTAG----------------------------------AGTCTAGCGATCTATAAACAATATTA-----CCCCAGC-----------------------------------CACTCTAATTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAATTG-ACACACAC-CCACAC------------TCGAAAAA-----A-AA-CTTT--TAA-----AGCAT
droRho1 scf7180000777956:203571-203821 + GGAGCACACA----------TTATTTGATTA-----------------G--------------------------------------------------------C----T--CTAGTTTTAAACGATCCA-----AAA-----GAGGAG------CCGGTCGAAACCGCAAATCAAATA------------AT--TG---------------A--A-------AAACTTTATAAGTGTTGTCTA-------GTAGAA------ATGAACATTTT-----ATATCG---ATATCTAAACTAG----------------------------------ACTTTAGCGATCTATAAACAATATTA-----CCCCAGC-----------------------------------CACTCTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAACG-ACACACAC-CCACAC------------TCGAAAAA-----A-AT---CTTAAAA-----AGCAT
droFic1 scf7180000453948:1857654-1857903 + GGAGCACAGA----------TTTTTCGATTA-----------------T--------------------------------------------------------C----T--ATAGTTTAAAACGATCCA-----AGA-----AAGGAG------CAGGTCGAGACCCCAAATCAAATC------------AT--TA---------------C-A---------AACTTTATAAATGTTGTCTA-------GTAGAA------ATGAACATTTT-----ATATCG---ATATCTGAACTAG----------------------------------ACTCTAGCGATCTATAAACAATATTA-----CC---GT-----------------------------------CATTCTAGTTGTGCTTT---TCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCAC-CCACAC------------TCGAAAAAAC--AA-AA-CTTC--TAA-----AGCAT
droKik1 scf7180000302385:346033-346284 - GGAGCACACACACGCACACCTCATTTGATTAGAGCCACTCTACG-------------------------------------------------------------ATATAT--ATAGTTTGTAACGATCTA-----AAG-----GA----------------------GCAAATCAAATA------------AT--TG---------------G--A------AAACCTTTATAAGTGTTGTCTG-------GTAGCAATGAAAATGAAACTTTT-----ATATCGAAGATATCTAAACTAG--------------------------------AGACTCTAGCGATCTATAAACA--AATACTCTACCCAAGGCA---------------------------------TTATCTAGATGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAAACCGCACGCAA-CC-----------------------------------------------------
droAna3 scaffold_13266:10594535-10594808 + GGAGTACGTC----------TAATTTGATTA-----------------G--------------------------------------------------------CTATAT--ATAGTTTACAACCAGCCG-----AAA-----G-----------------------TCTAATCAAATA------------AT--TGAATCTTTAA----------CACGTAAAGTCTTTATAAATGTTGTCTG-------GTAGAA-----AATGAATATTTT-----ATAGCG---ATATCTGC----G----------------------------------ACACTAGCGATTTATTAATTATTGTA-----TT--AT---TGTAATCCA--------GAGC------------CACTCTA---GTGCTTT---CCA---------------TCAAATGTTTCAGCGCGATAGTCCGCGTACACCCCACACCCGCACCCACACCCTATATG--A-GA-AA-CTTT---TA--TATGGCAT
droBip1 scf7180000396428:1016416-1016668 + GGAGTACGTC----------TAACTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTTACGAG-TATC---CGAAA-----G-----------------------GCGAATCAAATA------------AT--TA---------------A--ACAAGTAACCTCTTTATAAATGTTGTCTG-------GTAGAA-----AATGAACATTTT-----ATAGCG---ATATCTAAGCTCG----------------------------------ACCCTAGCGATTTATAAGTAATACTA-----CCCT----------------------GAGC------------CATTCTAGTTGTGCTTT---CCA---------------TCAAATGTTTCAGCGTGATAAGCGCCGCACACCCCACAC------------TCTACTCTTT--GA-AA-CTTT---TATATATGGCAT
dp5 3:10618889-10619142 + TAAATTCATT----------TCTCTCGGG-----ATACTCCCGACTTTG--------------------------------------------------------C----T--TTAGTTTCTAATGATTTA-----GATTTAGTGAGGCA------GAGGTAAAA---GCAGAAC--------------------------------------A---------AACTCTTTATAAATGTTGTCTG-------GTAGTA------TGAAATATCTT-----ATATCG---ATATCTAAACTAG----------------------------------T-----GCCATTTATAGAAC--------------------------AGCACTACCCCCAGCCCCTACCCTACCTATACTAGCTGTGCGTT---GAA---------------TCAAAAGCTTCCTCTGGCATTTG-ACG-----------T------------TGGCAGTTTC-GTT-GA-CAGC---AG-----A----
droPer2 scaffold_4:5947614-5947867 + TAAATTCATC----------TCTCTCGGG-----ATACTCCCGACTTTG--------------------------------------------------------C----T--TTAGTTTCTAATGATTTA-----GATTTAGTGAGGCA------GAGGTAAAA---GCAGAAC--------------------------------------A---------AACTCTTTATAAATGTTGTCTG-------GTAGTA------TGAAATATCTT-----ATATCG---ATATCTAAACTAG----------------------------------T-----GCCATTTATAGAAC--------------------------AGCACTACCCCCAGCCCCTACCCTACCTATACTAGCTGTGCGTT---GAA---------------TCAAAAGCTTCCTCTGGCATTTG-ACG-----------T------------TGGCAGTTTC-GTT-GA-CATC---AG-----A----
droWil2 scf2_1100000004954:3880647-3880936 - AACCTACATA----------TAT-ATG------------ACTGAATTCGCTTTCATATTTCATGCGAAGAGTGTTTAATT---------------------------A-----TTAGTTTTCA---------------------------------------------TCCAATCAAATATGAATATG----AA--TT---------------ATA---------AAATTTATAAATGTTGTCTATGCATTCGTAGTG------ATGAATTTTTTCAACGATATCG---ATATGAATACTAG----------------------------------TCTTTAG--ATCTATATAAT--------------------------CCTAATCCTCCTAATACCCAACATGT-ATATCCAGGTGTGCTTT---CCAATCAAAAACAAAAAATCAAATGTTTCAGTGTAA----G-CTACACAC-CTAAGC------------AGAAAAAA-----------------AA-----AACAC
droVir3 scaffold_12875:20564445-20564799 + AGAGAATATA----------ATGCTCGATAT-----G--ACTGAAC-CGCTTTCAGACATTGCATAAACAGAGTTGAATTGAATTTATTTTTATTTATTGATTAGT----TGTAGAGTTCTATATGTT------------T------------------GTT-AAAGCATAAATCAAATATG--TATGAATAACTATGAATATTTCACAGAAAG---------AAAATTTTATAAATGTTGTCTATCCACTTGTAGTC--------ACAAATTTT-----ATAACG---CTAAACAAATACAACATATATATGTCTCTCTCTCTCAGTATATATAGAATCTAG--ATTTGTATACAAT----------------------------------------------------ATTATTGTCGCGCTTT---CAA---------------TCAAATGTTTCAGCATAATATT---CATGTGC-GTAGAG------------CGGAAACG--GAAGCAG-C-TT---CT-----AACAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGAGCACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCTA-----TGAGAG--GAGGAG------CGCGTTGCAACCGCAAATCAAATA------------GC--T------------------A---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAACCA--------------------------------------CTAGCAACCTATTAACCAAAATA-----CCC--GACA---------------------------------TTATATAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCAT-CCACGC------------GCGAAAAATC-GCA-AA-CATC---CG-----AGCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................TGTCTA-------GTAGAA------TTGAACATTTT-----ATA............................................................................................................................................................................................................................................................26110.001000000046000000000
............................................................................................................................................................................................................................................TGTTGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................2114.00431000000000000000
............................................................................................................................................................................................................................................TGTTGTCTA-------GTAGAA------TTGAACATTT.....................................................................................................................................................................................................................................................................2514.00400000012001000000
...............................................................................................................................................................................................................................................TGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---A.....................................................................................................................................................................................................................................................3013.00300000012000000000
......................................................................................................................................................................................................................................TATAAATGTTGTCTA-------GTAGAA------TTGAACA........................................................................................................................................................................................................................................................................2812.00200000002000000000
.........................CGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCA.....................................................................................................................................................................................................................................................................................................................................................................................................................2612.00200000000000002000
......................................................................................................................................................................................................................................TATAAATGTTGTCTA-------GTAGA......................................................................................................................................................................................................................................................................................2012.00200000011000000000
............................TTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCTA-----TGA............................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000010001000000
.......................................................................................................................................................................................................................................ATAAATGTTGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................2612.00202000000000000000
.........................CGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................2512.00200000020000000000
.....................................................................................................................................................................................................................................TTATAAATGTTGTCTA-------GTAGAA------TTGAA..........................................................................................................................................................................................................................................................................2712.00200000011000000000
......................................................................................................................................................................................................................................TATAAATGTTGTCTA-------GTAGAA------TTGAA..........................................................................................................................................................................................................................................................................2612.00200000001000001000
............................................................................................................................................................................................................................................TGTTGTCTA-------GTAGAA------TTGAACATTTT-----A..............................................................................................................................................................................................................................................................2712.00200000000000002000
.............................TA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCTA-----C..............................................................................................................................................................................................................................................................................................................................................................................................................2412.00200000000000002000
.........................................................................................................................................................................................................................................................................................................................................................................................................................TTATATAGTTGTGCTTT---CCA---------------T.......................................................................................2111.00100010000000000000
...........................................................................................................................ACGATCTA-----TGAGAG--GAGGAG------C..........................................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.............................................................................................................................................................................................................................................................TAGAA------TTGAACATTTT-----ATATCG---ATA...................................................................................................................................................................................................................................................2511.00100000001000000000
................................................................................................................................................................................................................................................GTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---A.....................................................................................................................................................................................................................................................2911.00100000001000000000
..................................................................................................................................................................................................................................................CTA-------GTAGAA------TTGAACATTTT-----...............................................................................................................................................................................................................................................................2011.00110000000000000000
.......................................................................................................................TCGAACGATCTA-----TGAGAG--GAG....................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
...................................................................................................................................................................................................................................................TA-------GTAGAA------TTGAACATTTT-----AT.............................................................................................................................................................................................................................................................2111.00110000000000000000
....CACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--......................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100001000000000000
..................................................................................................................................................................................................................................................CTA-------GTAGAA------TTGAACATTTT-----ATATCG---AT....................................................................................................................................................................................................................................................2811.00100100000000000000
........................................................................................................................................................................................................................................TAAATGTTGTCTA-------GTAGAA------TT.............................................................................................................................................................................................................................................................................2111.00100000010000000000
.................................................................................................................................................................................................................................AACTTTATAAATGTTGTCTA-------GTAGAA------...............................................................................................................................................................................................................................................................................2611.00100000000000010000
..............................................................................................................T--ATAGTTTCGAACGATCTA-----TGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................2411.00100000000001000000
......................................................................................................................................................................................................................................TATAAATGTTGTCTA-------GTAGAA------TTGA...........................................................................................................................................................................................................................................................................2511.00100000010000000000
..................................................................................................................TAGTTTCGAACGATCTA-----TGAGAG--GA.....................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
........................................................................................................................................................................................................................................TAAATGTTGTCTA-------GTAGA......................................................................................................................................................................................................................................................................................1811.00100001000000000000
.............................................................................................................................................................................................................................................................................................G---ATATGCAAACCA--------------------------------------CTAGCAAC............................................................................................................................................................................................2111.00100000000000100000
.............................TA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCTA-----TGA............................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000001000000000
....................................................................................................................................................................................................................................................A-------GTAGAA------TTGAACATTTT-----A..............................................................................................................................................................................................................................................................1911.00110000000000000000
......................................................................................................................................................................................................................................TATAAATGTTGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................2711.00100000010000000000
..............................................................................................................T--ATAGTTTCGAACGATCTA-----TGAGAG--GA.....................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
....................................................................................................................................................................................................................................TTTATAAATGTTGTCTA-------GTAGAA------TT.............................................................................................................................................................................................................................................................................2511.00100000001000000000
...........................................................................................................................................................................................................................................................................................TCG---ATATGCAAACCA--------------------------------------CTAGCAACCTAT........................................................................................................................................................................................2711.00100000000001000000
................................................................................................................................................................................................................................................................................TTT-----ATATCG---ATATGCAAACCA--------------------------------------CTAGCAA.............................................................................................................................................................................................2811.00100000001000000000
......................................................................................................................TTCGAACGATCTA-----TGAGAG--GAGGAG------C..........................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
..............................................................................................................................................................................................................................................TTGTCTA-------GTAGAA------TTGAACATTTT-----A..............................................................................................................................................................................................................................................................2511.00100000010000000000
....................................................................................................................................................................................................................................TTTATAAATGTTGTCTA-------GTAGAA------TTGAACA........................................................................................................................................................................................................................................................................3011.00100000001000000000
...................................................................................................................................................................................................................................................TA-------GTAGAA------TTGAACATTTT-----A..............................................................................................................................................................................................................................................................2011.00101000000000000000
.....................................................................................................................................................................................................................................TTATAAATGTTGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................2811.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................TATTAACCAAAATA-----CCC--GACA---------------------------------TTAA..........................................................................................................................2511.00100000000000001000
..........................................................................................................................................................................................................................................AATGTTGTCTA-------GTAGAA------TTGA...........................................................................................................................................................................................................................................................................2111.00101000000000000000
.....................................................................................................................................................................................................................................TTATAAATGTTGTCTA-------GTAGAA------TTGAACA........................................................................................................................................................................................................................................................................2911.00100000010000000000
...........................ATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
.................................................................................................................................................................................................................................................................................TT-----ATATCG---ATATGCAAACCA--------------------------------------C...................................................................................................................................................................................................2111.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATG-GCACGCAT-CCACGC------------GCGAAAAA.............................2711.00100000000000001000
.................................................................................................................................................AGGAG------CGCGTTGCAACCGCAA...........................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
............................................................................................................................CGATCTA-----TGAGAG--GAGGAG------C..........................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
droSec2
GGAGCACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCTA-----TGAGAG--GAGGAA------CGCGTTGCAGTCGCAAATCAAATA------------GC--T------------------A---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAACCA--------------------------------------CTAGCAACCTATTAACCAAAATA-----CCC--GACA---------------------------------TTATATAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCAT-CCACGC------------GCGAAAAATC-GCA-AA-CATC---AG-----AGCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................ATCTA-----TGAGAG--GAGGAA------CGA........................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.................................................................................................................ATAGTTTCGAACGATCTA-----TGAGAG--GAG....................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---CCA---------------TTAAATGTTTCAGTGT........................................................................2211.0010001
........................................................................................................................CGAACGATCTA-----TGAGAG--GAGGT..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
....................TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTT...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATG-GCACGCAT-CCACGC------------G....................................2011.0010001
.................................................................................................................................TA-----TGAGAG--GAGGAA------CGCGTTGCAGTCG..............................................................................................................................................................................................................................................................................................................................................................................2711.0010100
..........................................................................................................................................................................................................................................AATGTTGTCTA-------GTAGAA------TTGA...........................................................................................................................................................................................................................................................................2111.0010100
...........................................................................................................................................GAG--GAGGAA------CGCGTTGCAGT................................................................................................................................................................................................................................................................................................................................................................................2011.0010010
.....................................................................................................................TTTCGAACGATCTA-----TGAGAG--GAG....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010001
................................................................................................................................................GAGGAA------CGCGTTGCAGTCG..............................................................................................................................................................................................................................................................................................................................................................................1911.0010001
.......................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------TTATATAGTTGTGCTTT---CC........................................................................................................2011.0011000
..............................................................................................................................................................................................................................................................................................................................................................TTAACCAAAATA-----CCC--GACA---------------------------------TT............................................................................................................................2111.0011000
.......................................................................................................................TCGAACGATCTA-----TGAGAG--GA.....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.....ACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--......................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
...........................................................................................................................................................................................................................................ATGTTGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................2211.0011000
................................................G--------------------------------------------------------C----T--ATAGTTTCGAACGATCT.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
..........................................................................................................................AACGATCTA-----TGAGAG--GAGGAA------CGCG.......................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.......................................................................................................................TCGAACGATCTA-----TGAGAG--GAG....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
...........................................................................................................................................................................................................................................................................................................................................................................................................................ATATAGTTGTGCTTT---CCA---------------TTA.....................................................................................2111.0010001
dm3
GGAGCACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATCTA-----TGCGTG--GAGGAA------CACGTTGCAACCGCAAATCAAATA------------GA--T------------------A---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAACCAC----------------------------------TAACTAGCAACCTATTAACCGAAATA-----CCC--G------------------------------------AATTATAGTTGTGCTTTCTTCCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCAA-CCACGC------------ACGAAAAATC-GAA-AA-CATC---TG-----AATATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................TAAATGTTGTCTA-------GTAGAA------TTGAACATT......................................................................................................................................................................................................................................................................281210.0021000000000000000000000000000000000000000000000000000000000000000000000000000000496535590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................271181.0018100000000000000000000000000000000000001000000002000001000000000000000000000000375542340000000000000000000000000000000000000000000000000000000000000000001001000100000000000000000000000000000000010000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
....................................................................................................................GTTTCGAACGATCTA-----TGCGTG--.......................................................................................................................................................................................................................................................................................................................................................................................................21193.0093000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030012000000000000000038020000000000000000000000000002001000000000000220000000000000001010030000100000000000000000000000000000000000000000000310000000000000000100000000010
........................................................................................................................................................................................................................................TAAATGTTGTCTA-------GTAGAA------TTGAACATTT.....................................................................................................................................................................................................................................................................29191.009100000000000000000000000000000000000000000000000000000000000000000000000000000253410220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................TAAATGTTGTCTA-------GTAGAA------TTGAACA........................................................................................................................................................................................................................................................................26173.007300000000000000000000000000000000000000000000000001000000000000000000000000000571000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000100000000020000000001060000000204031010000000000000000000000000000000000000000000000000000000000000000010000600000000000001000000000022401000
....................................................................................................................................................................................................T------------------A---------AACTTTATAAATGTTGTCTA-------GTAGAA------...............................................................................................................................................................................................................................................................................28171.007100000000000000000000000000000000000000000000000000000000000000000000000000000131811190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030002110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.............................TA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................21170.007000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000020000100000000000000000511010000100000000000200007010
............................................................................................................................................................................................................................................................................................................................................................TATTAACCGAAATA-----CCC--G------------------------------------AATTATAGT.....................................................................................................................27167.00670000000000000000000000000000000000000000000000000000000000000000000000000000010151170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070304130000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000000300000
.................................................................................................................................................................................................................................................TCTA-------GTAGAA------TTGAACATTTT-----ATATCG---A.....................................................................................................................................................................................................................................................28165.006500000000000000000000000000000000000000000000000000000000000000000000000000000221313170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................TCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................26161.00610000000000000000000000000000000000000000000000000000000000000000000000000000011217140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001100010000100000000000000000000300000
.....................TATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAACGATC......................................................................................................................................................................................................................................................................................................................................................................................................................29160.006000000000000000000000000000000000000000000000000000000000000000000000000000000132313110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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GGAGCACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTTAAACGATCTA-----TAA-----GAGGGA------CACGTTGAAACCGCAAATCAAATA------------AC--T------------------A---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAAC---------------------------------------ACTAGCAACCTATTAACCAAAATA-----CC--AGG-----------------------------------CATTTTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCCT-CCACAC------------GCGAGA-ATC-GAA-AA-CAAC---CA-----AGCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................CTA-----TAA-----GAGGGA------CACGTTGA...................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------GCGAGA-ATC-GAA-AA-CAAC---CA-----AGCA.2511.0010000100
.........................................................................................................................................................................................................................................AAATGTTGTCTA-------GTAGAA------TT.............................................................................................................................................................................................................................................................................2011.0011000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGCTTT---CCA---------------TTAAATGTTTCAGTG.........................................................................2711.0011000000
..............................................................................................................................................................................................................................................................AGAA------TTGAACATTTT-----ATATCG---ATA...................................................................................................................................................................................................................................................2411.0011000000
..........................................................................................................................................................................................................................................AATGTTGTCTA-------GTAGAA------TTGAACA........................................................................................................................................................................................................................................................................2411.0010000100
............................................................................................................................................................CACGTTGAAACCGCAAATCAAATA------------AC--...................................................................................................................................................................................................................................................................................................................................................2611.0011000000
..........................................................................................................................................................................................................................................................................................ATCG---ATATGCAAAC---------------------------------------ACTAGCAACCTA.........................................................................................................................................................................................2611.0010000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTGTGCTTT---CCA---------------TTAAATGTT...............................................................................2511.0011000000
..................................................................................................................................................................................................................................................CTA-------GTAGAA------TTGAACATTTT-----ATA............................................................................................................................................................................................................................................................2311.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTCAGTGTGCAAATG-G...............................................................2111.0010000010
.............................................................................................................................................................................................................................................GTTGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................2011.0010010000
..............................................................................................................................................................................................................................................................................ATTTT-----ATATCG---ATATGCAAAC---------------------------------------ACTAGC...............................................................................................................................................................................................2711.0010000010
............................................................................................................................................................................................................................................TGTTGTCTA-------GTAGAA------TTGAACATTTT-----...............................................................................................................................................................................................................................................................2611.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATG-GCACGCCT-CCACAC------------G....................................1911.0011000000
.....ACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
.GAGCACACA----------TTATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGT.................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
...................................................................................................................................................................................................................................CTTTATAAATGTTGTCTA-------GTAGAA------TTGA...........................................................................................................................................................................................................................................................................2811.0010000010
.......................................................................................................................................................................................................................................ATAAATGTTGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................2611.0010000100
............................................................................................................................................................................................................................................................................................CG---ATATGCAAAC---------------------------------------ACTAGCAACCTAT........................................................................................................................................................................................2511.0011000000
................................................................................................................................CTA-----TAA-----GAGGGA------CACGTTGAAACCGCA............................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
............................................................................................................................................................................................................................................TGTTGTCTA-------GTAGAA------TTGA...........................................................................................................................................................................................................................................................................1911.0010000010
.........................................................................................................................................................................................................................................AAATGTTGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................2411.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATG-GCACGCCT-CCACAC------------GC...................................2011.0011000000
droYak3
GGAGCACA------------TTATTTGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTTAAACGATCTA-----TAA-----GAGGGA------CACGTTGAAACCGCAAATCAAATA------------AT--AG---------------CTA---------AACTTTATAAATGTTGTCTA-------GTAGAA------TTGAACATTTT-----ATATCG---ATATGCAAAC---------------------------------------ACTAGCAACCTATTAACCAAAATA-----CC--AGG-----------------------------------CATTTTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCGT-CCACAC------------GCGAAAAATCCAAA-AA-CATC---CA-----AGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................TGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................1812.00220000000000
....................................................................................................................................................................AACCGCAAATCAAATA------------AT--AG---------------CT................................................................................................................................................................................................................................................................................................................................2212.00200000020000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGTGTGCAAATG-GCA.............................................................2011.00101000000000
.............................................................................................................................................................................................................................................GTTGTCTA-------GTAGAA------TTGAAC.........................................................................................................................................................................................................................................................................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TTAGTTGTGCTTT---CCA---------------TTA.....................................................................................1911.00101000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTT---CCA---------------TTAAATGTTTCAGT..........................................................................2311.00101000000000
..........................................................................................................................AACGATCTA-----TAA-----GAGGGA------CACGTTGAA..................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
..........................................................................................................................................................................................................................................AATGTTGTCTA-------GTAGAA------TTGAACA........................................................................................................................................................................................................................................................................2411.00110000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCAAA-AA-CATC---CA-----AGC..1911.00100100000000
.......................................................................................................................TTAAACGATCTA-----TAA-----GAGGGA------CACGTT.....................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
...................................................................................................................................................................................................................................CTTTATAAATGTTGTCTA-------GTAGA......................................................................................................................................................................................................................................................................................2311.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTTTCAGTGTGCAAATG-G...............................................................2111.00101000000000
............................................................................................................................................................CACGTTGAAACCGCAAATCAAATA------------.......................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..............................................................................................................................................................................................................................................................................ATTTT-----ATATCG---ATATGCA...............................................................................................................................................................................................................................................1811.00101000000000
.......................................................................................................................................................................................................................................ATAAATGTTGTCTA-------GTAGAA------TT.............................................................................................................................................................................................................................................................................2211.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TTT---CCA---------------TTAAATGTTTCAGT..........................................................................2011.00101000000000
droEug1
GGAGCCCATC----------TTTTTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCAAGCGATCTGAGTA-GAA-----GAGGAGCAGTAGCAGGTTGAAACCGCAAATCAAATG------------AT--TA---------------C--A-------AAACTTTATAAATGTTGTCTA-------GTAGAA------GTGAACATTTT-----ATATCG---AAATCTAAACTAG----------------------------------ACTCTAGCCATCTATTAGCCATAATA-----ACCCAGC-----------------------------------CATTCTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCCATCG-GCATGCAC-CCACAC------------TCGAAGAA-----A-AACCTTC---TA-----AGCATSizeHit CountTotal NormTotal
No Reads
droBia1
GCAGCACCTT----------TAATTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTCGAGCGGTCTA-----GGA-----GAGGAG------CAGGTGGAAACCGCAAATCAAATG------------AT--TA---------------C--A-------AAACTTTATAAATGTTGTCTA-------GTAGAA------ACGAACATTTT-----ATATCG---ATATCTATACTAG----------------------------------ACTCTAGCGATCTATTAGCC---------------AGT-----------------------------------CATTCTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGCGTGCAAATG-GCACGCAC-CCACAC------------TCGAGATA------------------------AGGAGSizeHit CountTotal NormTotal
No Reads
droTak1
GGAGCACATA----------TTATTTGACTA---------------------------------------------------------------------------------------------CGATCTA-----AAA-----GAGGAG------CAGGTTCAAACCGCAAATCAAATA------------GT--AA---------------C-A---------AACTTTATAAATGTTGTCTA-------GTAGAA------ATGAACATTTT-----ATATCG---ATATCTATACTAG----------------------------------ACTCTAGCAATCTATTAACCATACTA-----CCC-AGC-----------------------------------CATTCTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAAAG-GCACGCAC-CCGCAC------------TCGAAATA--A-AA-AA-ATCT---TA-----AGCATSizeHit CountTotal NormTotal
No Reads
droEle1
GGAGCACATA----------TTATTTGATTA-----------------G--------------------------------------------------------C----TCTCTAGTTTTAAACGATCCA-----AAAGA---GAGGAG------CAGGTCGAAACCGCAAATCAAATACT---ATA----AT--AG---------------C--------AAAAACTTTATAAATGTTGTCTA-------GTAGAA------ATGAAC-TTTT-----GTATCG---ATATCTAAACTAG----------------------------------AGTCTAGCGATCTATAAACAATATTA-----CCCCAGC-----------------------------------CACTCTAATTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAATTG-ACACACAC-CCACAC------------TCGAAAAA-----A-AA-CTTT--TAA-----AGCATSizeHit CountTotal NormTotal
No Reads
droRho1
GGAGCACACA----------TTATTTGATTA-----------------G--------------------------------------------------------C----T--CTAGTTTTAAACGATCCA-----AAA-----GAGGAG------CCGGTCGAAACCGCAAATCAAATA------------AT--TG---------------A--A-------AAACTTTATAAGTGTTGTCTA-------GTAGAA------ATGAACATTTT-----ATATCG---ATATCTAAACTAG----------------------------------ACTTTAGCGATCTATAAACAATATTA-----CCCCAGC-----------------------------------CACTCTAGTTGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAACG-ACACACAC-CCACAC------------TCGAAAAA-----A-AT---CTTAAAA-----AGCATSizeHit CountTotal NormTotal
No Reads
droFic1
GGAGCACAGA----------TTTTTCGATTA-----------------T--------------------------------------------------------C----T--ATAGTTTAAAACGATCCA-----AGA-----AAGGAG------CAGGTCGAGACCCCAAATCAAATC------------AT--TA---------------C-A---------AACTTTATAAATGTTGTCTA-------GTAGAA------ATGAACATTTT-----ATATCG---ATATCTGAACTAG----------------------------------ACTCTAGCGATCTATAAACAATATTA-----CC---GT-----------------------------------CATTCTAGTTGTGCTTT---TCA---------------TTAAATGTTTCAGTGTGCAAATG-GCACGCAC-CCACAC------------TCGAAAAAAC--AA-AA-CTTC--TAA-----AGCATSizeHit CountTotal NormTotal
No Reads
droKik1
GGAGCACACACACGCACACCTCATTTGATTAGAGCCACTCTACG-------------------------------------------------------------ATATAT--ATAGTTTGTAACGATCTA-----AAG-----GA----------------------GCAAATCAAATA------------AT--TG---------------G--A------AAACCTTTATAAGTGTTGTCTG-------GTAGCAATGAAAATGAAACTTTT-----ATATCGAAGATATCTAAACTAG--------------------------------AGACTCTAGCGATCTATAAACA--AATACTCTACCCAAGGCA---------------------------------TTATCTAGATGTGCTTT---CCA---------------TTAAATGTTTCAGTGTGCAAAACCGCACGCAA-CC-----------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
GGAGTACGTC----------TAATTTGATTA-----------------G--------------------------------------------------------CTATAT--ATAGTTTACAACCAGCCG-----AAA-----G-----------------------TCTAATCAAATA------------AT--TGAATCTTTAA----------CACGTAAAGTCTTTATAAATGTTGTCTG-------GTAGAA-----AATGAATATTTT-----ATAGCG---ATATCTGC----G----------------------------------ACACTAGCGATTTATTAATTATTGTA-----TT--AT---TGTAATCCA--------GAGC------------CACTCTA---GTGCTTT---CCA---------------TCAAATGTTTCAGCGCGATAGTCCGCGTACACCCCACACCCGCACCCACACCCTATATG--A-GA-AA-CTTT---TA--TATGGCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCAGCGCGATAGTCCGC..............................................................2011.001010000
....................................................................................................................................................................................................................................TTTATAAATGTTGTCTG-------GTAGAA-----AATGA...........................................................................................................................................................................................................................................................................2811.001000010
......................................................................................................................TTACAACCAGCCG-----AAA-----G-----------------------TCT............................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................TATAAATGTTGTCTG-------GTAGA......................................................................................................................................................................................................................................................................................2011.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAGCGCGATAGTCCGC..............................................................1811.001010000
.................................................................................................................................................................................ATA------------AT--TGAATCTTTAA----------CACG..........................................................................................................................................................................................................................................................................................................................2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTTTCAGCGCGATAGTCCG...............................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------TCAAATGTTTCAGCGCGATAGTC.................................................................2511.001000001
................................................................................................................................................................................................................................................................................TTT-----ATAGCG---ATATCTGC----G----------------------------------AC.....................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................................................ATGTTGTCTG-------GTAGAA-----AA..............................................................................................................................................................................................................................................................................1811.001000001
droBip1
GGAGTACGTC----------TAACTCGATTA-----------------G--------------------------------------------------------C----T--ATAGTTTTACGAG-TATC---CGAAA-----G-----------------------GCGAATCAAATA------------AT--TA---------------A--ACAAGTAACCTCTTTATAAATGTTGTCTG-------GTAGAA-----AATGAACATTTT-----ATAGCG---ATATCTAAGCTCG----------------------------------ACCCTAGCGATTTATAAGTAATACTA-----CCCT----------------------GAGC------------CATTCTAGTTGTGCTTT---CCA---------------TCAAATGTTTCAGCGTGATAAGCGCCGCACACCCCACAC------------TCTACTCTTT--GA-AA-CTTT---TATATATGGCATSizeHit CountTotal NormTotal
No Reads
dp5
TAAATTCATT----------TCTCTCGGG-----ATACTCCCGACTTTG--------------------------------------------------------C----T--TTAGTTTCTAATGATTTA-----GATTTAGTGAGGCA------GAGGTAAAA---GCAGAAC--------------------------------------A---------AACTCTTTATAAATGTTGTCTG-------GTAGTA------TGAAATATCTT-----ATATCG---ATATCTAAACTAG----------------------------------T-----GCCATTTATAGAAC--------------------------AGCACTACCCCCAGCCCCTACCCTACCTATACTAGCTGTGCGTT---GAA---------------TCAAAAGCTTCCTCTGGCATTTG-ACG-----------T------------TGGCAGTTTC-GTT-GA-CAGC---AG-----A----SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCTGGCATTTG-ACG-----------T------------TGG..................................2112.0020200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATTTG-ACG-----------T------------TGGCAGTT.............................2112.0020200000000
..........................................................................................................................................................................................................................................................................................ATCG---ATATCTAAACTAG----------------------------------T-----GCC..............................................................................................................................................................................................2112.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCTGGCATTTG-ACG-----------T------------TG...................................2112.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-ACG-----------T------------TGGCAGTTTC-GTT-GA-...................2112.0020200000000
.........................................................................................................................................................................................................................................AAATGTTGTCTG-------GTAGTA------TGA............................................................................................................................................................................................................................................................................2112.0020100001000
.......................................................................................................................................................................................................................................................................................................................................................................................................................CCTATACTAGCTGTGCGTT---G.........................................................................................................2012.0020200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTG-ACG-----------T------------TGGCAGTTTC-G.........................2112.0020200000000
...........................................................................................................................................................................................................................................ATGTTGTCTG-------GTAGTA------TGAAA..........................................................................................................................................................................................................................................................................2111.0010000001000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTTG-ACG-----------T------------TGGCAGTTTC-..........................2111.0010100000000
......................................................................................................................................................................................................................................TATAAATGTTGTCTG-------GTAGTA------...............................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................TGATTTA-----GATTTAGTGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................TTTATAAATGTTGTCTG-------GTAG.......................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCTGGCATTTG-ACG-----------T------------TG...................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGGCATTTG-ACG-----------T------------TGGCA................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................ATCG---ATATCTAAACTAG----------------------------------T-----GC...............................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ACG-----------T------------TGGCAGTTTC-GTT-GA-...................2011.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CTGTGCGTT---GAA---------------TCAAAAGCT...............................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------------TCAAAAGCTTCCTCTGG.......................................................................2011.0010100000000
............................................................................................................................................TAGTGAGGCA------GAGGTAAAA---G..............................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...............................................................................................................................................TGAGGCA------GAGGTAAAA---GCAG...........................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CCCAGCCCCTACCCTACCTAT...........................................................................................................................2111.0010100000000
.............................................................................................................................................AGTGAGGCA------GAGGTAAAA---GCAGAAC--------------------------------------A---------........................................................................................................................................................................................................................................................................................................................2611.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTG-ACG-----------T------------TGGCAGTTTC-GT........................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................ATTTATAGAAC--------------------------AGCACTACCC...............................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................AATGTTGTCTG-------GTAGTA------TGAAAT.........................................................................................................................................................................................................................................................................2311.0010000100000
........................................................................................................................................................................................................................................................................................ATATCG---ATATCTAAACTAG----------------------------------T-----G................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................TTAGTGAGGCA------GAGGTAAAA---G..............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................ATTTA-----GATTTAGTGAGGCA------GA.........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................AGGCA------GAGGTAAAA---GCAGAAC--------------------------------------..................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................TAG----------------------------------T-----GCCATTTATAGAAC--------------------------AGT......................................................................................................................................................2111.0010100000000
............................................................................................................................................TAGTGAGGCA------GAGGTAAAA---GC.............................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ACCTATACTAGCTGTGCGTT---..........................................................................................................2011.0010000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TT---GAA---------------TCAAAAGCTTCCTCTGG.......................................................................2211.0010100000000
................................................................................................................................................................................................................................................................................CTT-----ATATCG---ATATCTAAACTA..........................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGCATTTG-ACG-----------T------------TGGCAG...............................2011.0010100000000
.............................................TTTG--------------------------------------------------------C----T--TTAGTTTCTAATG.........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................GCACTACCCCCAGCCCCTACC...................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CTATACTAGCTGTGCGTT---GA........................................................................................................2011.0010100000000
......CATT----------TCTCTCGGG-----ATACTCCCT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTTG-ACG-----------T------------TGGCAGTTTC-..........................2011.0010100000000
...........................................................................................................................ATGATTTA-----GATTTAGTGAGGC..................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................TTATAAATGTTGTCTG-------GTAGTA------TGAA...........................................................................................................................................................................................................................................................................2611.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-ACG-----------T------------TGGCAGTTTC-GTT-G.....................1911.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-----------T------------TGGCAGTTTC-GTT-GA-CAGC---............2111.0010100000000
..................................................................................................................................................................................................................................TCTTTATAAATGTTGTCTG-------G..........................................................................................................................................................................................................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCTTCCTCTGGCATTTG-A...............................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTCCTCTGGCATTTG-AC..............................................................2011.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................CTATACTAGCTGTGCGTT---GAA---------------........................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TACCTATACTAGCTGTGCGTT---GAA---------------TC......................................................................................2611.0010100000000
....................TCTCTCGGG-----ATACTCCCGACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................AAATGTTGTCTG-------GTAGTA------TG.............................................................................................................................................................................................................................................................................2011.0010100000000
............................................CTTTG--------------------------------------------------------C----T--TTAGTTTCTAATGA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................TTA-----GATTTAGTGAGGCA------GAGG.......................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGGCATTTG-ACG-----------T------------TGGC.................................1911.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TT---GAA---------------TCAAAAGCTTCCTCTG........................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GAA---------------TCAAAAGCTTCCTCTGGC......................................................................2111.0010100000000
........................................................................................................................................................................................................................................TAAATGTTGTCTG-------GTAGTA------TG.............................................................................................................................................................................................................................................................................2111.0010000001000
.........................................................................................................................TAATGATTTA-----GATTTAGTGT.....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGTGCGTT---GAA---------------TCAAA...................................................................................2011.0010100000000
.................................................................................................................................................................................................................................................................................TT-----ATATCG---ATATCTAAACTAG----------------------------------T-----.................................................................................................................................................................................................2211.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTTC-GTT-GA-CAGC---AG-----A----1911.0010100000000
.................................................................................................................................TA-----GATTTAGTGAGGCA------GAGGT......................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
droPer2
TAAATTCATC----------TCTCTCGGG-----ATACTCCCGACTTTG--------------------------------------------------------C----T--TTAGTTTCTAATGATTTA-----GATTTAGTGAGGCA------GAGGTAAAA---GCAGAAC--------------------------------------A---------AACTCTTTATAAATGTTGTCTG-------GTAGTA------TGAAATATCTT-----ATATCG---ATATCTAAACTAG----------------------------------T-----GCCATTTATAGAAC--------------------------AGCACTACCCCCAGCCCCTACCCTACCTATACTAGCTGTGCGTT---GAA---------------TCAAAAGCTTCCTCTGGCATTTG-ACG-----------T------------TGGCAGTTTC-GTT-GA-CATC---AG-----A----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................GTTGTCTG-------GTAGTA------TGAAAT.........................................................................................................................................................................................................................................................................2012.002000002
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG-----------T------------TGGCAGTTTC-GTT-GA-CAT................2111.001010000
..........................................................................................................................................................................................................................................................................................ATCG---ATATCTAAACTAG----------------------------------T-----GC...............................................................................................................................................................................................2011.001001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCATTTG-ACG-----------T------------TGGCAGT..............................2011.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG-ACG-----------T------------TGGCAGTTTC-GTT-G.....................2111.001000001
.....................................................................................................................................................................................................................................TTATAAATGTTGTCTG-------GTAG.......................................................................................................................................................................................................................................................................................2011.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................CTACCTATACTAGCTGTGCGT..............................................................................................................2111.001000001
...........................................................................................................................................................................GAAC--------------------------------------A---------AACTCTTTATAAATG.........................................................................................................................................................................................................................................................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCTCTGGCATTTG-ACG-----------T------------TG...................................2111.001010000
..........................................................................................................................................................................................................................................................................................................................................................TTTATAGAAC--------------------------AGCACTACCCC..............................................................................................................................................2111.001010000
...........................................................................................................................ATGATTTA-----GATTTAGTGAGGCA------GAGGT......................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
...............................................................................................................................................TGAGGCA------GAGGTAAAA---GCAGA..........................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droWil2
AACCTACATA----------TAT-ATG------------ACTGAATTCGCTTTCATATTTCATGCGAAGAGTGTTTAATT---------------------------A-----TTAGTTTTCA---------------------------------------------TCCAATCAAATATGAATATG----AA--TT---------------ATA---------AAATTTATAAATGTTGTCTATGCATTCGTAGTG------ATGAATTTTTTCAACGATATCG---ATATGAATACTAG----------------------------------TCTTTAG--ATCTATATAAT--------------------------CCTAATCCTCCTAATACCCAACATGT-ATATCCAGGTGTGCTTT---CCAATCAAAAACAAAAAATCAAATGTTTCAGTGTAA----G-CTACACAC-CTAAGC------------AGAAAAAA-----------------AA-----AACACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................................................................................................................................................................................TAG--ATCTATATAAT--------------------------CCTAATCCTCCTAA...........................................................................................................................................2811.00101000
...................................................................................................................................................................................................................................................................................................................................................................T--------------------------CCTAATCCTCCTAATACCCAACATG................................................................................................................................2611.00101000
........TA----------TAT-ATG------------ACTGAATTCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAA----G-CTACACAC-CTAAGC------------AGAAAAAA-----------------............2711.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................ATACCCAACATGT-ATATCCAGGTGTGCT...............................................................................................................2811.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAAATGTTTCAGTGTAA----G-C...............................................................2311.00100010
droVir3
AGAGAATATA----------ATGCTCGATAT-----G--ACTGAAC-CGCTTTCAGACATTGCATAAACAGAGTTGAATTGAATTTATTTTTATTTATTGATTAGT----TGTAGAGTTCTATATGTT------------T------------------GTT-AAAGCATAAATCAAATATG--TATGAATAACTATGAATATTTCACAGAAAG---------AAAATTTTATAAATGTTGTCTATCCACTTGTAGTC--------ACAAATTTT-----ATAACG---CTAAACAAATACAACATATATATGTCTCTCTCTCTCAGTATATATAGAATCTAG--ATTTGTATACAAT----------------------------------------------------ATTATTGTCGCGCTTT---CAA---------------TCAAATGTTTCAGCATAATATT---CATGTGC-GTAGAG------------CGGAAACG--GAAGCAG-C-TT---CT-----AACAGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGC-GTAGAG------------CGGAAACG--G..........................2113.003000001000200000000000000000000000000000000000000000000000000000
.......................CTCGATAT-----G--ACTGAAC-CGCTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000000000000000000000000010100000100000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG------------CGGAAACG--GAAGCAG-C-TT---............2112.002000000000000000000000000000000000200000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGC-GTAGAG------------CGGAAACG--GA.........................2012.002000002000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---CATGTGC-GTAGAG------------CGGAAACG--...........................2312.002000000000000000000000000000000000000002000000000000000000000000
........TA----------ATGCTCGATAT-----G--ACTGAAC-CGCTTTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................ATACAAT----------------------------------------------------ATTATTGTCGCG.................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................TGATTAGT----TGTAGAGTTCTATA...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AAATACAACATATATATGTCT...........................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
......TATA----------ATGCTCGATAT-----G--ACTGAAC-CGCTC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000100000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................CTCAGTATATATAGAATCTAG--..............................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
........TA----------ATGCTCGATAT-----G--ACTGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TATATATGTCTCTCTCTCTCAGTA..............................................................................................................................................................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGTCGCGCTTT---CAA---------------TC......................................................................................2011.001000000000000000000000000000000010000000000000000000000000000000
..........................................................................................................................................................................................................................................AATGTTGTCTATCCACTTGTAGT......................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000001000
....................ATGCTCGATAT-----G--ACTGAAC-CG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................TGCTCGATAT-----G--ACTGAAC-CGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...GAATATA----------ATGCTCGATAT-----G--ACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
........................................................................................................GT----TGTAGAGTTCTATATGTT------------T------------------GT......................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000100
..............................................................................................................................................................................................................................................TTGTCTATCCACTTGTAGTC--------A............................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................TT---CAA---------------TCAAATGTTTCAGCAA........................................................................2111.001000000000000000000000000010000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTGC-GTAGAG------------CGGAAACG--...........................2111.001000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAG------------CGGAAACG--GAAGCAG-C-TT---CT-----.....2511.001000000000000000000000000000000000000000100000000000000000000000
.................................................................AAACAGAGTTGAATTGAATTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGAG------------CGGAAACG--GAAGCAG-C-T................2311.001000000000000000000000000000010000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................TATATATAGAATCTAG--ATTTG.........................................................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
........................................................................................................GT----TGTAGAGTTCTATATGTT------------...........................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
.............................................................GCATAAACAGAGTTGAATTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTGC-GTAGAG------------CGGAAACG--GA.........................2311.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTATTGTCGCGCTTT---CAA---------------TCA.....................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TATATATGTCTCTCTCTCT...................................................................................................................................................................................................................1911.001000100000000000000000000000000000000000000000000000000000000000
.................................................................AAACAGAGTTGAATTGAATTTATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................ATCCACTTGTAGTC--------ACAAAT.......................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
....AATATA----------ATGCTCGATAT-----G--ACTGAAC-CGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001000000000000000000000000000000000000000000000000000000000000100
...............................................................................................TATTGATTAGT----TGTAGAGTTCTAT............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000001000000000000000000000000000000000
..................................................................AACAGAGTTGAATTGAATTTAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC-GTAGAG------------CGGAAACG--GAAG.......................2011.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................GTATATATAGAATCTAG--ATTTGTATA.....................................................................................................................................................................................2611.001000000000000000000000000000000000000000000000000000000000000100
........................TCGATAT-----G--ACTGAAC-CGCTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000100000000000000000000000

Generated: 05/19/2015 at 12:12 AM