ID:

dsi_9907

Coordinate:

2r:5317232-5317287 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-6.9	-6.7	-6.5

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACCGAGAATGTAACGAATCCTACCTGCGTGTTCTGGAACTATATTGACCAGTAAGACTTTAGATCATATGCTGAAGAATTTTTACGAATTAATATTTTTGTTCTAGTGCGTGGTCTGCTAATGGATGCAGTCTGGAGTCCACTAACCGCACACACA ************************************************((((((((((((........))))))...)))))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	M023 head	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M053 female body	O002 Head
........................................................................................................................ATGGATGCAGTCTGGAGTC.................	19	0	1	1.00	1	0	1	0	0	0	0	0
........................TGCGTGTTCTGGAACTATATTGACCA..........................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
........................TGCGTGTTCTGGAACTATATTGAC............................................................................................................	24	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................ATGCGTGGTCTGCTAATGGA...............................	20	1	1	1.00	1	0	0	1	0	0	0	0
....................TACCTGCGTGTTCTGGAACT....................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0
......................CCTGCGTGTTCTGGAACTATATTGA.............................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
................................CTGGAACTATATTGACCA..........................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
..........................................................TAAGATCACATGTTGAAGAATTTTT.........................................................................	25	3	1	1.00	1	0	0	0	1	0	0	0
........................TGCGTGTTCTGGAACTATATCGAC............................................................................................................	24	1	1	1.00	1	0	0	0	0	1	0	0
..................................................GTAAGACTTTAGATCATATGCTGAAG................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0
......................CCTGCGTGTTCTGGAACT....................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
.....................ACATGCGTGCTCTGGAAC.....................................................................................................................	18	2	5	0.20	1	0	0	0	0	0	1	0
.....................ACCTGCGCGTTCTGG........................................................................................................................	15	1	8	0.13	1	0	0	0	1	0	0	0
....................................................................TGCAGAAGAGTTTTCACGAATT..................................................................	22	3	10	0.10	1	0	0	1	0	0	0	0
.............CGAATCCTACCTGCGGA..............................................................................................................................	17	2	11	0.09	1	0	0	0	1	0	0	0
........................................................................GAAGAGTTTTTCCGAATT..................................................................	18	2	20	0.05	1	0	0	0	0	0	0	1
........................TGCGTGTTCTGGAAAAA...................................................................................................................	17	2	20	0.05	1	0	0	0	0	1	0	0

Anti-sense strand reads

TGGCTCTTACATTGCTTAGGATGGACGCACAAGACCTTGATATAACTGGTCATTCTGAAATCTAGTATACGACTTCTTAAAAATGCTTAATTATAAAAACAAGATCACGCACCAGACGATTACCTACGTCAGACCTCAGGTGATTGGCGTGTGTGT ************************************************((((((((((((........))))))...)))))).....................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	M024 male body	M053 female body	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
..................................................................ATACTACATCTTAAAAATTCTTAAT.................................................................	25	3	1	3.00	3	3	0	0	0	0	0
.............................................CTGGTTATTCTGAAGTCTA............................................................................................	19	2	2	0.50	1	0	1	0	0	0	0
....................................TTGATACGATTGGTCATTCT....................................................................................................	20	3	5	0.20	1	0	0	1	0	0	0
.....................................................................................CTTAATTATAAAAAC........................................................	15	0	8	0.13	1	0	0	0	1	0	0
........TCAGTGCTTAGGATGG....................................................................................................................................	16	2	20	0.10	2	0	0	0	0	2	0
..............................................................TAATATACGACTTCTT..............................................................................	16	1	18	0.06	1	0	0	0	0	0	1

Generated: 04/23/2015 at 01:01 PM