ID:

dsi_9892

 Coordinate:

3l:9126395-9126544 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.1 -8.1 -8.0

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

TGTTAAATTTACTTTACTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTAAGTTTTAAAGTTTACAGTTGAAAGGTAATAGAGAAAATTGAGATTCCCGTTATATTTCGCTTCCTCTCATTCCAAGCCGCTCTGGCTGTGCTTGTGTGTGTGTGTGTGTGTGAGTGCAGCTTGCATATTCCAACGCATTTTGCCGGTTCCAGTTGGACTCTATTTATGGGCCAATTTCCTTAGTTCAAATTGTCTTG
*****************************************************************..(((......((((((.((((....((((((.........)))))).....)))))))....)))...))).**************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M023
head
 M024
male body		 M025
embryo
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
............................................................................................................................................................GTGTTTGTGAGTGCAGCT............................................................................ 18 1 5 1.60 8 8 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTTGGACTCTATTTATGGGCC......................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................TCTCATTCCAAGCCGCTCTGG................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................TGTTCCACATGAAGCTAAGG....................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................TACAGTTGAAAGGTAATAGAG.................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................TTTTGCCGGTTCCAGTTGGAC....................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................GCATTTTGCCGGTTCCAGTTGGAC....................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
......................AATGCTGGATGTTCCACATGAAGCT........................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................TATGTGTGAGTGCAGCTTGAGT....................................................................... 22 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GTCGGTGTTTGTGAGTGCAGCT............................................................................ 22 3 7 0.43 3 0 1 0 0 0 0 0 2 0 0
..............................................................................................................................................................................................TTTTGGAGGTTCCAGTTGAAC....................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0
.........................................................................................................................................................TCGGTGTTTGTGAGTGCAGCT............................................................................ 21 3 10 0.30 3 1 0 1 0 0 0 0 1 0 0
............................................................................................................................................................GTGTTTGTGAGTGCAGC............................................................................. 17 1 7 0.29 2 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGTGTGAGTGCAGCT............................................................................ 15 0 4 0.25 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................GTCGGTGTTTGTGAGTGCAGC............................................................................. 21 3 9 0.22 2 0 2 0 0 0 0 0 0 0 0
........................TGCTGGAGGTTCCACA.................................................................................................................................................................................................................. 16 1 6 0.17 1 1 0 0 0 0 0 0 0 0 0
....................AACTTGCTGGATGTTCCTC................................................................................................................................................................................................................... 19 3 20 0.10 2 2 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................GTTTGTGAGTGCAGCT............................................................................ 16 1 10 0.10 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................GTGTTTGTGAGTGCAG.............................................................................. 16 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................TGATAGGAAATAGAGAAACT............................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................TGTGCTTGTGTGTGTGTGTG........................................................................................... 20 0 20 0.05 1 1 0 0 0 0 0 0 0 0 0
........................................................................................AATTGAGATTCCCTT................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................GTTTGTGAGTGCAGC............................................................................. 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.................................................................................TAGAGAATAATGAGATT........................................................................................................................................................ 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................TATATTGCGCTACCTCCC................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

ACAATTTAAATGAAATGAAGTTTTACGACCTACAAGGTGTACTTCGATTCCATTCAAAATTTCAAATGTCAACTTTCCATTATCTCTTTTAACTCTAAGGGCAATATAAAGCGAAGGAGAGTAAGGTTCGGCGAGACCGACACGAACACACACACACACACACACTCACGTCGAACGTATAAGGTTGCGTAAAACGGCCAAGGTCAACCTGAGATAAATACCCGGTTAAAGGAATCAAGTTTAACAGAAC
****************************************************************************************************************..(((......((((((.((((....((((((.........)))))).....)))))))....)))...))).***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M053
female body
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
.............................CTACAAGGTGTACTTCGATTC........................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
........AATGAAATGAAGTTTTACGAC............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0
.....................................................................................................................................................................TCACGTCGAACGTATAAGGTT................................................................ 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................................................................................................CCGATTAAAGGAATC.............. 15 1 10 0.10 1 0 0 0 1 0
...........................................................................................................................AGGTTCGCCGAGCCCG............................................................................................................... 16 2 20 0.05 1 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:9126345-9126594 - dsi_9892 TGTTAAATTTACTTTA------------------------------CTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTAAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATAGAGAAAATTGAGA-----TTC------------CCGTTATAT----T---------------TCGCT----TCCTCT------------CATTCCAAGCCGCTCTGGCTGTG----CT-------TGTGTGTGTGTGTGTGT--GTGAG------TGCAG-CTTG----C---------------------ATAT-TCC--------------------------AACGC----ATTTTGCCGGTTCCAG----TTGGA-----CTCT-ATTTATGGGCCAATTTCCTTAGTT----------CAAA-----TT--G---T---------------------CTTG
droSec2 scaffold_0:1601018-1601240 - TGTTAAATTTACTTTA------------------------------CTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTAAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATAGAGAAAAATGAGA-----TTC------------CCGTTATAT----T---------------TCGCT----TCCTCT------------CATTCCAAGCCGCTCTGGCTGTG----CT---------------------TGTGTGTGTG------TG--------------------------------------------------------------------AATGC----ATTTTGCCGGTTCCAG----TTGGA-----CTCT-ATTCATGGGCCAATTTCCTTAGTT----------CAAA-----TT--G---T---------------------CTTG
dm3 chr3L:9351519-9351764 - TGTTAAATTTACTTTA------------------------------CTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTGAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATAGAGAAAAATGACA-----TTC------------CCGTTATAT----T---------------TCGCT----TCCTTT------------CATTCCAAGCCGCTCTGGCTGCG----CT-------T----GTGTGTGTGTGT--GTGAG------TGCAG-CTTG----C---------------------ATAT-TCC--------------------------AACGC----ATTTTGCCGGTTCCAG----TTGGA-----CTCT-ATTTATGGGCCAATTTCATTAGTT----------CAAA-----TT--G---T---------------------CTTG
droEre2 scaffold_4784:9350846-9351101 - TGTTAAATTTACTTCA-------CATACAA-----CT-AAATA-A-CTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTAAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATGGTGGAATCTGAGG-----TTC------------CCGTTACAT----T---------------TCGCT----CCCTCT------------CATTCCAAGCCGCTCTGGCTGAG----CT---------------------TGTATGTGAG------TGCAG-CTTG----C---------------------ACAT-TCC--------------------------AACGC----ATTTTGCCGGTTCCAG----CTGGA-----CTCT-ATTTATGGGCCAATTTCCTTAGTT----------CAAA-----TT--GCCCT---------------------CTTG
droYak3 3L:2565547-2565809 + TGTTAAATTTACTTTTGCTTTACTCTACAAA-----T-AAATA-A-CTTCAAAATGCTGGATGTTCCACATGAAGCCAAGGTAAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATGGTGGCAAATGGGG-----TTC------------CCGTTACAT----T---------------TCGCT----CCCTCT------------CATTCCAAGCCGCTCTGAATGCG----CT---------------------TGTGTGTGAG------TGCAG-CTTG----C---------------------ATAT-TCC--------------------------AACGC----ATTTTGCCGGTTCCAG----TTGGA-----CTCT-ATTTATGGGCCAATTTCCTTAGTT----------CGGA-----TT--GCCCT---------------------CTTG
droEug1 scf7180000409824:180014-180277 + TGATAAACTAACTTTA----------------------AAAAA-G-CTTTAAAATGTTGGATGTCCCACACGAAGCCAAGGTAAGTTTTTGAGTT-TTTTTTTTACAGTT-TTATAGTTTGTAGTGAAAACAGAAA-----TTC------------CCTT--CTG----C---------------TCGCTAA--CTCTCT------------CCTTCCAAGCCTCTCTGGCGGTG----TT---------------------TGT--GTGAG------TGCAG-CTTG----C---------------------ACATTTCCAGTGT-----------------ATGCAACGC----ATTTTGCCGGTTCCAG----TTGGG-----CTCT-ATTTATGTGCCAATTTCCTTACTT----------ATAA-----TTT-GCCCT---------------------CTTG
droBia1 scf7180000300910:1860809-1861067 + TGACGAAATTACTTCG-------G-----A------GAAAAAA-G-CCTTAAAATGTTGGATGTTCCACACGAAGCTAAGGTGAGTTTTTAAGTT--------TACAGT--TTAAAATTAAGGTGGACAGGAGGGA-----GTT------------CCGCTCTCT----C---------------TCTCC----CCCAGC------------CCTTCCAAGCCCCTCTCGCTGCT----CT---------------------GGT--GTGAG------TGCAG-CTTG----C---------------------ACTT-TCCAGCGT-----------------ATGCAACGC----ACTTTGCCGGTTCCAG----TTGGG----GCTCT-ATTTACGGGCCCACTTCCTTAGTT----------ATAA-----TT--GCCCT---------------------CTTA
droTak1 scf7180000415664:283301-283563 + TGACAAATTTACCTCA-------------AA-----C-AAAAA-C-CTTAAATATGTTGGATGTTCCCCACGAAGCTAAGGTAAGTTTAAAAGTT--------TACAGT--TTAAAGTT---T--GGCAAAAGGGAATAAAATC------------CCGTTGCCTTCCGG---------------TCTCTCC--CTCTCT------------CATTCCAAGCCTCTCTTGCTGCG----CT---------------------TGT--GTGAG------TGCAG-CTTG----C---------------------ACAT-TCCAGCGT-----------------ATGCAACGC----ATTTTGCCGGTTCCAG----TTGGG-----TTCC-ATTTATGGGCCAATTTCCTTAGTT----------ATAG-----CT--GCCCT---------------------CTTG
droEle1 scf7180000491193:3602017-3602266 - TGACAAATT-AC----------------AAATTGATT-AAAAA-ACTTTAAAAATGTTGGATGTTCCACACGAAGCCAAGGTGAGCTTTTCAGTT--------TACAGT--TATAAATT---GGTGTAAAAAGAAA-----A----------CTTCCGGT------------------------------------CTCT------------CATTCCAAGTCACTCTTGCTGCG----TT---------------------AGT--GTGAG------TGCAG-CTTG----C---------------------ACAT-TCCAGTGTATTGT------------ATGCAACGC----ATTTTGCCGGTTCCAG----TCGGG-----CTCT-GTTTATGGGCCAATTTCCTTAGTT----------ATAG-----TT--GCCCT---------------------CTTG
droRho1 scf7180000775999:40592-40841 - TTA-AAAGTTAC----------------AAATTAATT-AAAAA-CCTTTAAATATGTTGGATGTTCCACACGAAGCCAAGGTGAGTTTTTTAGTG--------TACAGT--TTAAAGTT---GGTGTAAAAAGAAA-----A----------CTTCCGGT------------------------------------CTCT------------CATTCCAAGCCTCTCTGGCTGCT----TT---------------------TGT--GTGCG------TGCAT-CTTG----C---------------------ACTT-TCCAGTGTATTGT------------ATGCAACAC----ATTTTGCCGGTTCCAG----TTGGG-----CTCT-ATTTATGGGCCAATTTCCTTAGTT----------ATAA-----TT--GCCCT---------------------CTTG
droFic1 scf7180000454065:2294602-2294848 + TGATAAAATAACT-------------------------AAAAA-CCCTTAAAAATGTTGGATGTTCCACACGAAGCAAAGGTGAGTTGTTAAGTT--------TACAGTTTTGAAAGCT---AGAGGAAAGGGAAG---------------------CGTTCTCT----T---------------CCGCG------ATTT------------TATTCCAAGTCGCTCTTGCTGCA----AT---------------------TGT--GTGAG------TGCAG-CTTG----C---------------------ACAT-TCCAGTAT-----------------ATGCAGCAA----TTTTTGCCGGTTCCAG----AGGGG-----CTAT-ACTTATGGGCCCATTTCCTTAGTT----------ATAG-----TTGCGCCCT---------------------CTTG
droKik1 scf7180000302486:1889163-1889406 - TGATCAATTAA-TACA----------------------AAAAAGGCCAAAAATATGTTGGATGTTCCCCATGAAGCCAAGGTAATTTACAGT-T-AAATT-------------------------GCTAAATACGT-----TTC------------CAGTT------------------------TTCCT----CTCTCC------------CGGTTCAAGTCTCTCTTTCTGAG----TG-------T----GTGTTAGTGAGT--GTGAG------TGCAG-CTTG----G---------------------ATAT-TACAGTGT-----------------ATGCA--------ATTTTGCCGGTTCCAG----TTGGC-----CTGC-AGTTATGGGCCCATTTCTGCTGTT----------ATAA-----TT--ACCCTATTGA----------------CTTG
droAna3 scaffold_13337:16941579-16941805 - dan_2684 TTA---ATTTATTAGA-------------A--------------------ATAATGTTGGATGTGCCCCATGAAGCCCAGGTCAGTCTAA-AGT-----------------TAAAATTTAA-ATATAAAAATCATA-----TTT----------TCTAGC--------------------------CGC------------------------ATTCT-------------CGAG----TC-------T----CTGTTAATCCGT--CTCT---CAAGTGCAG-CTTG----C---------------------A--T-TCCAGTGCAGCGACAACAAAAACAAACACAA--C----AATATGCCGGTTCCAG----TGGG------CTCTCCTTTAC--------------------------------------------CTTTTGACGCCAATTGTGTGTCGTTCG
droBip1 scf7180000396641:432230-432462 - AA-----TTTATTAGA-------------A--------------------ATAATGTTGGATGTGCCCCATGAAGCCCAGGTGAGTTTAAAA-T-GCATAATAT-------------TTGA-GTTTAAAAACCGTA-----TTT----------TCAAGC------------------------------------CGTA------------GTTTTCAAGACTCTCTTGTTGGA----CT---------------------C-----CAAG------TGCAG-CTTGGCAGT---------------------GCAT-TCCAGTGCAGCGACAACAAAAACAAACACAA--T----AATATGCCGGTTCCAG----CGTGCTGGGGCT---------------GGTACCTTTG----------------------------------ATGCCAATT-TGTGTCGTTCG
dp5 XR_group5:174555-174828 + GTG-ACCCCTACTATA----------------------ATAAA-----TCATTATGTTGGATGTGCCCAATGAAGGAAAGGTGAGTTTTAAC-T-AAATTTTATGCAGTG-------------------------------TTT------------CTGTTTCCT----CCCGCAAACGCTAGGTTCTCTCT--CTCTCT------------CGT-------CTC---GGC------------AAACGC----AGGTTTGTATGG--GTGAG------TGCATTCTTG----C---------------------A--T-TCCAGTGG-----------------ATGCAACAA----ATGTTGCCGGTCTCA------TGGA-----CTGT-ATTTATAGGCACCGCACCTCTCTTCTCCGGATATCTGGTAACGAA--GCCCTTTTGACTCGGACTC-------TCTG
droPer2 scaffold_58:241320-241595 - GTG-ACCCCTACTATA----------------------ATAAA-----TCATTATGTTGGATGTGCCCAATGAAGGAAAGGTGAGTTTTAAC-T-AAATTGTATGCAGTG-------------------------------TTA------------CTGTTTCCT----CCCACAAACGCTAGGTTCTCTCTCTCTCTCT------------CGT-------CTC---GGC------------AAACGC----AGGTTTGTATGG--GTGAG------TGCATTCTTG----C---------------------A--T-TCCAGTGG-----------------ATGCAACAA----ATGTTGCCGGTCTCA------TGGA-----CTGT-ATTTATAGGCACCGCACCTCTCTTCTCCGGATATCTGGTAACGAA--GCCCTTTTGACTCGGACTC-------TCTG
droWil2 scf2_1100000004837:1078087-1078320 + AATAAAAA-GACCAT-------------------------------TCTCAATATGTTGGATATTCCCCAAGAAGCCAAGGTGAGG-------------------CAGT--CAAAAA--------------TAATT-----AAC------------CTGTATTCC----C---------------TCG--------ACTC------------TTTTCTACGC-GCGCA--TTATTTATGTCTTACT--CGCTTGCACT----CA-----CGGTGTAACTGCAT-CATG----C---------------------A--T-TCCAGCGT-----------------ATGCAACAATAAATTTTTGCCGGCTCCAGTTTCTCGCT-----CACT-ATTTTTAGACCCTTCTC---------------------------------------AAGCCAATTT-------TCTG
droVir3 scaffold_13049:11050892-11051109 - dvi_19466 C-------------------------------------------------AAAATGTTGGATGTGCCACAAGAAGCCAAGGTAAGTTTTGTTGTT--------GA-------------------------------------TCCAATCGCT----CTCTTTCCT----C-------------------CCT--CTCACTCACTTCGCACACGAATGTCAGTCCCTCTCTTTCAC----GC-------------------TCTCA--TTGAG------TGCAG-CAAA--------------AATGCAGCGTTAATTC-TCCAGTAA-----------------ATGCAACAA----CTGTTGCCGGTTTT-------TACT-----CTCT-ATTTATAGCCGGACAT------------------TTGATGG--------CGG---------------------TTGT
droMoj3 scaffold_6680:9772732-9772958 + C-------------------------------------------------AAAATGTTGGATATTCCACAAGAAGGCAAGGTAAGTTGCGTTAGT--------TACATT--CAAACGCT-----------------------CT------------TAGCTACTG----T---------------TCGCT----CTTCAC------------TATTCTCTGTCTCTCACACTGCT----CG---------------TT----TGT--TTGAA------TGCAG-TTAG----CTTCGACTGAAATGCAGCGGAAATTC-TCCAGTAA--------------AAAATGCAACAA----CAATTGCCGGTTTTTA-----CGGT-----CTCT-AAATTTAGCCAAAGCT------------------TTGG-----C---GGCGG---------------------TTGT
droGri2 scaffold_15110:8271099-8271138 + C-------------------------------------------------AATATGTTGGATGTACCACAAGAAGCAAAGGTAAATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGTTAAATTTACTTTA------------------------------CTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTAAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATAGAGAAAATTGAGA-----TTC------------CCGTTATAT----T---------------TCGCT----TCCTCT------------CATTCCAAGCCGCTCTGGCTGTG----CT-------TGTGTGTGTGTGTGTGT--GTGAG------TGCAG-CTTG----C---------------------ATAT-TCC--------------------------AACGC----ATTTTGCCGGTTCCAG----TTGGA-----CTCT-ATTTATGGGCCAATTTCCTTAGTT----------CAAA-----TT--G---T---------------------CTTGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................................................................................................................................................................G----TTGGA-----CTCT-ATTTATGGGCC..................................................................2111.00100100000000000000
.....................................................................................................................................................................................................TCT------------CATTCCAAGCCGCTCTGG...............................................................................................................................................................................................................................................2111.00100010000000000000
.............................................................TGTTCCACATGAAGCTAAGG....................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000100000000
.......................................................................................................TACAGT--TGAAAGGTAATAGAG.......................................................................................................................................................................................................................................................................................................................................................2111.00100000000100000000
......................................................................................................................................................................................................................................................................................................................................................................TTTTGCCGGTTCCAG----TTGGA-----C.................................................................................2111.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................GC----ATTTTGCCGGTTCCAG----TTGGA-----C.................................................................................2411.00110000000000000000
....................................................AATGCTGGATGTTCCACATGAAGCT........................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000100000000000
......................................................................................................................................................................................................................................................................TGT--GTGAG------TGCAG-CT.......................................................................................................................................................................................1540.25100000000001000000
.......................................................................................................................................................................................................................................TGTG----CT-------TGTGTGTGTGTGTG...............................................................................................................................................................................................................20200.05100000000001000000
droSec2
TGTTAAATTTACTTTA------------------------------CTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTAAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATAGAGAAAAATGAGA-----TTC------------CCGTTATAT----T---------------TCGCT----TCCTCT------------CATTCCAAGCCGCTCTGGCTGTG----CT---------------------TGTGTGTGTG------TG--------------------------------------------------------------------AATGC----ATTTTGCCGGTTCCAG----TTGGA-----CTCT-ATTCATGGGCCAATTTCCTTAGTT----------CAAA-----TT--G---T---------------------CTTGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................ATGTTCCACATGAAGCTAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................2212.0020020
............................................................ATGTTCCACATGAAGCTAAG.....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.........................................................................................AAAGTT--------TACAGT--TGAAAGGT..............................................................................................................................................................................................................................................................................................................................................................2011.0010010
.........................................................TGGATGTTCCACATGAAGCT........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.....AATTTACTTTA------------------------------CTTCAAAAT..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
.................................................CAAAATGCTGGATGTTCCAC................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
dm3
TGTTAAATTTACTTTA------------------------------CTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTGAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATAGAGAAAAATGACA-----TTC------------CCGTTATAT----T---------------TCGCT----TCCTTT------------CATTCCAAGCCGCTCTGGCTGCG----CT-------T----GTGTGTGTGTGT--GTGAG------TGCAG-CTTG----C---------------------ATAT-TCC--------------------------AACGC----ATTTTGCCGGTTCCAG----TTGGA-----CTCT-ATTTATGGGCCAATTTCATTAGTT----------CAAA-----TT--G---T---------------------CTTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................TTCAAAATGCTGGATGTT....................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TA------------------------------CTTCAAAATGCTGGATGTTCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................CTGGATGTTCCACATGAAGC.........................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................TTCAAAATGCTGGATGTTCCA.................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000
...................................................AAATGCTGGATGTTCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TGTTCCACATGAAGCTAAGGTC..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................GATGTTCCACATGAAGCTA.......................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
.........................................................TGGATGTTCCACATGAAGCTA.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.......................................................GCTGGATGTTCCACATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................CTGGATGTTCCACATGAAGCATC......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TACTTTA------------------------------CTTCAAAATGCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................TTTTGCCGGTTCCAG----TTGGA-----C.................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................ACAGT--TGAAAGGTAATAG.........................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................TTGCCGGTTCCAG----TTGGA-----CTC...............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................CTCTGGCTGCG----CT-------T----GTGTGTG.................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTATGGGCCAATTTCATTAT.......................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TCAAAATGCTGGATGTTCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACTTTA------------------------------CTTCAAAATGCTGGA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................TCTGGCTGCG----CT-------T----GTGTGTGT................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
....................................................................CATGAAGCTAAGGTGAGTT..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................AAGGTAATAGAGAAAAATGAG..............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TGGATGTTCCACATGAAGCTAAGGTG..................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................AGT--TGAAAGGTAATAGAGAAA....................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...................................................................ACATGAAGCTAAGGTGAGTTT.............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TGCTGGATGTTCCACATGA............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TGCTGGATGTTCCACATGAAGCTAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TTTACTTTA------------------------------CTTCAAAATGCTGGATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................CAG----TTGGA-----CTCT-ATTTATGGGC...................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................GCTGGATGTTCCACATGAAGCTAAGG....................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................ATGCTGGATGTTCCACATGA............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................GCTGCG----CT-------T----GTGTGTGTGTGT--..........................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................GCTGCG----CT-------T----GTGTGTGTG...............................................................................................................................................................................................................1830.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TGCG----CT-------T----GTGTGTGTGTGT--GTG.......................................................................................................................................................................................................2290.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................T----GTGTGTGTGTGT--GTGAG------TG.............................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
........................................................................................................................................................................................................................................................T----GTGTGTGTGTGT--GTGAG------TGCA...........................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TGCG----CT-------T----GTGTGTGTGTGT--G.........................................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................................................................................................................................................................................................................................T-------T----GTGTGTGTGTGT--GTGAG------T..............................................................................................................................................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................GTGTGTGTGTGT--GTGAG------TGCA...........................................................................................................................................................................................21120.0810000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................TGCG----CT-------T----GTGTGTGTGTGT--..........................................................................................................................................................................................................19140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................CG----CT-------T----GTGTGTGTGTGT--GT........................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...............................................................................................................................................................................................................................................CT-------T----GTGTGTGTGTGT--GT........................................................................................................................................................................................................17200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................T-------T----GTGTGTGTGTGT--GTGA......................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
droEre2
TGTTAAATTTACTTCA-------CATACAA-----CT-AAATA-A-CTTCAAAATGCTGGATGTTCCACATGAAGCTAAGGTAAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATGGTGGAATCTGAGG-----TTC------------CCGTTACAT----T---------------TCGCT----CCCTCT------------CATTCCAAGCCGCTCTGGCTGAG----CT---------------------TGTATGTGAG------TGCAG-CTTG----C---------------------ACAT-TCC--------------------------AACGC----ATTTTGCCGGTTCCAG----CTGGA-----CTCT-ATTTATGGGCCAATTTCCTTAGTT----------CAAA-----TT--GCCCT---------------------CTTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................AAATGCTGGATGTTCCACATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................2411.0011000000
.................................................CAAAATGCTGGATGTTCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
............................................................ATGTTCCACATGAAGCTAAGG....................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
.......................................................................................................TACAGT--TGAAAGGTAATGGT........................................................................................................................................................................................................................................................................................................................................................2011.0010000100
.......................................AATA-A-CTTCAAAATGCTGGATGTTCC..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
.............................A-----CT-AAATA-A-CTTCAAAATGCTGGATGTT....................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
.....AATTTACTTCA-------CATACAA-----CT-A..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0011000000
droYak3
TGTTAAATTTACTTTTGCTTTACTCTACAAA-----T-AAATA-A-CTTCAAAATGCTGGATGTTCCACATGAAGCCAAGGTAAGTTTTAAAGTT--------TACAGT--TGAAAGGTAATGGTGGCAAATGGGG-----TTC------------CCGTTACAT----T---------------TCGCT----CCCTCT------------CATTCCAAGCCGCTCTGAATGCG----CT---------------------TGTGTGTGAG------TGCAG-CTTG----C---------------------ATAT-TCC--------------------------AACGC----ATTTTGCCGGTTCCAG----TTGGA-----CTCT-ATTTATGGGCCAATTTCCTTAGTT----------CGGA-----TT--GCCCT---------------------CTTGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................TGCTGGATGTTCCACATGAAGCCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
........................................................................................................ACAGT--TGAAAGGTAATGGTGGCA....................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................CAGT--TGAAAGGTAATGGTA.......................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.......................................AATA-A-CTTCAAAATGCTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
TGATAAACTAACTTTA----------------------AAAAA-G-CTTTAAAATGTTGGATGTCCCACACGAAGCCAAGGTAAGTTTTTGAGTT-TTTTTTTTACAGTT-TTATAGTTTGTAGTGAAAACAGAAA-----TTC------------CCTT--CTG----C---------------TCGCTAA--CTCTCT------------CCTTCCAAGCCTCTCTGGCGGTG----TT---------------------TGT--GTGAG------TGCAG-CTTG----C---------------------ACATTTCCAGTGT-----------------ATGCAACGC----ATTTTGCCGGTTCCAG----TTGGG-----CTCT-ATTTATGTGCCAATTTCCTTACTT----------ATAA-----TTT-GCCCT---------------------CTTGSizeHit CountTotal NormTotal
No Reads
droBia1
TGACGAAATTACTTCG-------G-----A------GAAAAAA-G-CCTTAAAATGTTGGATGTTCCACACGAAGCTAAGGTGAGTTTTTAAGTT--------TACAGT--TTAAAATTAAGGTGGACAGGAGGGA-----GTT------------CCGCTCTCT----C---------------TCTCC----CCCAGC------------CCTTCCAAGCCCCTCTCGCTGCT----CT---------------------GGT--GTGAG------TGCAG-CTTG----C---------------------ACTT-TCCAGCGT-----------------ATGCAACGC----ACTTTGCCGGTTCCAG----TTGGG----GCTCT-ATTTACGGGCCCACTTCCTTAGTT----------ATAA-----TT--GCCCT---------------------CTTASizeHit CountTotal NormTotal
No Reads
droTak1
TGACAAATTTACCTCA-------------AA-----C-AAAAA-C-CTTAAATATGTTGGATGTTCCCCACGAAGCTAAGGTAAGTTTAAAAGTT--------TACAGT--TTAAAGTT---T--GGCAAAAGGGAATAAAATC------------CCGTTGCCTTCCGG---------------TCTCTCC--CTCTCT------------CATTCCAAGCCTCTCTTGCTGCG----CT---------------------TGT--GTGAG------TGCAG-CTTG----C---------------------ACAT-TCCAGCGT-----------------ATGCAACGC----ATTTTGCCGGTTCCAG----TTGGG-----TTCC-ATTTATGGGCCAATTTCCTTAGTT----------ATAG-----CT--GCCCT---------------------CTTGSizeHit CountTotal NormTotal
No Reads
droEle1
TGACAAATT-AC----------------AAATTGATT-AAAAA-ACTTTAAAAATGTTGGATGTTCCACACGAAGCCAAGGTGAGCTTTTCAGTT--------TACAGT--TATAAATT---GGTGTAAAAAGAAA-----A----------CTTCCGGT------------------------------------CTCT------------CATTCCAAGTCACTCTTGCTGCG----TT---------------------AGT--GTGAG------TGCAG-CTTG----C---------------------ACAT-TCCAGTGTATTGT------------ATGCAACGC----ATTTTGCCGGTTCCAG----TCGGG-----CTCT-GTTTATGGGCCAATTTCCTTAGTT----------ATAG-----TT--GCCCT---------------------CTTGSizeHit CountTotal NormTotal
No Reads
droRho1
TTA-AAAGTTAC----------------AAATTAATT-AAAAA-CCTTTAAATATGTTGGATGTTCCACACGAAGCCAAGGTGAGTTTTTTAGTG--------TACAGT--TTAAAGTT---GGTGTAAAAAGAAA-----A----------CTTCCGGT------------------------------------CTCT------------CATTCCAAGCCTCTCTGGCTGCT----TT---------------------TGT--GTGCG------TGCAT-CTTG----C---------------------ACTT-TCCAGTGTATTGT------------ATGCAACAC----ATTTTGCCGGTTCCAG----TTGGG-----CTCT-ATTTATGGGCCAATTTCCTTAGTT----------ATAA-----TT--GCCCT---------------------CTTGSizeHit CountTotal NormTotal
No Reads
droFic1
TGATAAAATAACT-------------------------AAAAA-CCCTTAAAAATGTTGGATGTTCCACACGAAGCAAAGGTGAGTTGTTAAGTT--------TACAGTTTTGAAAGCT---AGAGGAAAGGGAAG---------------------CGTTCTCT----T---------------CCGCG------ATTT------------TATTCCAAGTCGCTCTTGCTGCA----AT---------------------TGT--GTGAG------TGCAG-CTTG----C---------------------ACAT-TCCAGTAT-----------------ATGCAGCAA----TTTTTGCCGGTTCCAG----AGGGG-----CTAT-ACTTATGGGCCCATTTCCTTAGTT----------ATAG-----TTGCGCCCT---------------------CTTGSizeHit CountTotal NormTotal
No Reads
droKik1
TGATCAATTAA-TACA----------------------AAAAAGGCCAAAAATATGTTGGATGTTCCCCATGAAGCCAAGGTAATTTACAGT-T-AAATT-------------------------GCTAAATACGT-----TTC------------CAGTT------------------------TTCCT----CTCTCC------------CGGTTCAAGTCTCTCTTTCTGAG----TG-------T----GTGTTAGTGAGT--GTGAG------TGCAG-CTTG----G---------------------ATAT-TACAGTGT-----------------ATGCA--------ATTTTGCCGGTTCCAG----TTGGC-----CTGC-AGTTATGGGCCCATTTCTGCTGTT----------ATAA-----TT--ACCCTATTGA----------------CTTGSizeHit CountTotal NormTotal
No Reads
droAna3
TTA---ATTTATTAGA-------------A--------------------ATAATGTTGGATGTGCCCCATGAAGCCCAGGTCAGTCTAA-AGT-----------------TAAAATTTAA-ATATAAAAATCATA-----TTT----------TCTAGC--------------------------CGC------------------------ATTCT-------------CGAG----TC-------T----CTGTTAATCCGT--CTCT---CAAGTGCAG-CTTG----C---------------------A--T-TCCAGTGCAGCGACAACAAAAACAAACACAA--C----AATATGCCGGTTCCAG----TGGG------CTCTCCTTTAC--------------------------------------------CTTTTGACGCCAATTGTGTGTCGTTCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................TTGGATGTGCCCCATGAAGCCCA......................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...................................................TAATGTTGGATGTGCCCCATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
.....................................................................ATGAAGCCCAGGTCAGTCT.............................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..............................................................GTGCCCCATGAAGCCCAGGTGC.................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.............................A--------------------ATAATGTTGGATGTGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..........................................................GGATGTGCCCCATGAAGCC........................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...................................................TAATGTTGGATGTGCCCCATGAAGCCC.......................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
..................................................................................................................................................................................................................................................................AATCCGT--CTCT---CAAGTGCAG-C........................................................................................................................................................................................2111.001100000
droBip1
AA-----TTTATTAGA-------------A--------------------ATAATGTTGGATGTGCCCCATGAAGCCCAGGTGAGTTTAAAA-T-GCATAATAT-------------TTGA-GTTTAAAAACCGTA-----TTT----------TCAAGC------------------------------------CGTA------------GTTTTCAAGACTCTCTTGTTGGA----CT---------------------C-----CAAG------TGCAG-CTTGGCAGT---------------------GCAT-TCCAGTGCAGCGACAACAAAAACAAACACAA--T----AATATGCCGGTTCCAG----CGTGCTGGGGCT---------------GGTACCTTTG----------------------------------ATGCCAATT-TGTGTCGTTCGSizeHit CountTotal NormTotal
No Reads
dp5
GTG-ACCCCTACTATA----------------------ATAAA-----TCATTATGTTGGATGTGCCCAATGAAGGAAAGGTGAGTTTTAAC-T-AAATTTTATGCAGTG-------------------------------TTT------------CTGTTTCCT----CCCGCAAACGCTAGGTTCTCTCT--CTCTCT------------CGT-------CTC---GGC------------AAACGC----AGGTTTGTATGG--GTGAG------TGCATTCTTG----C---------------------A--T-TCCAGTGG-----------------ATGCAACAA----ATGTTGCCGGTCTCA------TGGA-----CTGT-ATTTATAGGCACCGCACCTCTCTTCTCCGGATATCTGGTAACGAA--GCCCTTTTGACTCGGACTC-------TCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................TCATTATGTTGGATGTGCCCAATGAA...........................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000300
....................................................TATGTTGGATGTGCCCAATGAAG..........................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000001010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAA--GCCCTTTTGACTCGGAC.............2111.0010100000000
..................................................ATTATGTTGGATGTGCCCAATG.............................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
....................................................TATGTTGGATGTGCCCAATG.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
........................................AAA-----TCATTATGTTGGATGTGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
.............................................................TGTGCCCAATGAAGGAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000001000
.........................................................................................................................................................................................................................................................................................ATTCTTG----C---------------------A--T-TCCAGTGG-----------------ATG..........................................................................................................................2111.0010100000000
...........................................................GATGTGCCCAATGAAGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................AATGAAGGAAAGGTGAGTC..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTTGACTCGGACTC-------TCTG2011.0010100000000
..................................................ATTATGTTGGATGTGCCCAATGAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......................................................TGTTGGATGTGCCCAATGAAGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001000
..........ACTATA----------------------ATAAA-----TCATTATG.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..................................................................................................................................................................................................CTCTCT------------CGT-------CTC---GGC------------AAACG.............................................................................................................................................................................................................................2011.0010100000000
droPer2
GTG-ACCCCTACTATA----------------------ATAAA-----TCATTATGTTGGATGTGCCCAATGAAGGAAAGGTGAGTTTTAAC-T-AAATTGTATGCAGTG-------------------------------TTA------------CTGTTTCCT----CCCACAAACGCTAGGTTCTCTCTCTCTCTCT------------CGT-------CTC---GGC------------AAACGC----AGGTTTGTATGG--GTGAG------TGCATTCTTG----C---------------------A--T-TCCAGTGG-----------------ATGCAACAA----ATGTTGCCGGTCTCA------TGGA-----CTGT-ATTTATAGGCACCGCACCTCTCTTCTCCGGATATCTGGTAACGAA--GCCCTTTTGACTCGGACTC-------TCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................AA-----TCATTATGTTGGATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................1812.002200000
.............ATA----------------------ATAAA-----TCATTATGTTGGATGTGCC..................................................................................................................................................................................................................................................................................................................................................................................................................2712.002200000
.........................................AA-----TCATTATGTTGGATGTGCCCAATG.............................................................................................................................................................................................................................................................................................................................................................................................................2612.002200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCTGGTAACGAA--GCC...........................1812.002200000
.......................................................GTTGGATGTGCCCAATGAAGGAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
......................................ATAAA-----TCATTATGTTGGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
..................................................ATTATGTTGGATGTGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
..................................................ATTATGTTGGATGTGCCCAATGAAGG.........................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.............................................................TGTGCCCAATGAAGGAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001
...............A----------------------ATAAA-----TCATTATGTTGGATGT.....................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................TTGGATGTGCCCAATGAAGGAAAG.....................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
.............................................................TGTGCCCAATGAAGGAAAGG....................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
......................................................TGTTGGATGTGCCCAATGAAGGAAA......................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
...............................................................TGCCCAATGAAGGAAAGGT...................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
............................................................................................................................................................................................CTCTCTCTCTCT------------CGT-------CTC---GGC------------..................................................................................................................................................................................................................................2111.001010000
droWil2
AATAAAAA-GACCAT-------------------------------TCTCAATATGTTGGATATTCCCCAAGAAGCCAAGGTGAGG-------------------CAGT--CAAAAA--------------TAATT-----AAC------------CTGTATTCC----C---------------TCG--------ACTC------------TTTTCTACGC-GCGCA--TTATTTATGTCTTACT--CGCTTGCACT----CA-----CGGTGTAACTGCAT-CATG----C---------------------A--T-TCCAGCGT-----------------ATGCAACAATAAATTTTTGCCGGCTCCAGTTTCTCGCT-----CACT-ATTTTTAGACCCTTCTC---------------------------------------AAGCCAATTT-------TCTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.ATAAAAA-GACCAT-------------------------------TCTCAATATGT............................................................................................................................................................................................................................................................................................................................................................................................................................2412.00200110
.ATAAAAA-GACCAT-------------------------------TCTCAAT................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
.............................................................................................................................................................TGTATTCC----C---------------TCG--------ACTC------------TTTT.............................................................................................................................................................................................................................................................2011.00101000
droVir3
C-------------------------------------------------AAAATGTTGGATGTGCCACAAGAAGCCAAGGTAAGTTTTGTTGTT--------GA-------------------------------------TCCAATCGCT----CTCTTTCCT----C-------------------CCT--CTCACTCACTTCGCACACGAATGTCAGTCCCTCTCTTTCAC----GC-------------------TCTCA--TTGAG------TGCAG-CAAA--------------AATGCAGCGTTAATTC-TCCAGTAA-----------------ATGCAACAA----CTGTTGCCGGTTTT-------TACT-----CTCT-ATTTATAGCCGGACAT------------------TTGATGG--------CGG---------------------TTGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................AAATGTTGGATGTGCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000100000
....................................................AATGTTGGATGTGCCACA...............................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
.....................................................ATGTTGGATGTGCCACAAGAAGCC........................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
droMoj3
C-------------------------------------------------AAAATGTTGGATATTCCACAAGAAGGCAAGGTAAGTTGCGTTAGT--------TACATT--CAAACGCT-----------------------CT------------TAGCTACTG----T---------------TCGCT----CTTCAC------------TATTCTCTGTCTCTCACACTGCT----CG---------------TT----TGT--TTGAA------TGCAG-TTAG----CTTCGACTGAAATGCAGCGGAAATTC-TCCAGTAA--------------AAAATGCAACAA----CAATTGCCGGTTTTTA-----CGGT-----CTCT-AAATTTAGCCAAAGCT------------------TTGG-----C---GGCGG---------------------TTGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.....................................................ATGTTGGATATTCCACAAGAAGGCAA......................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
droGri2
C-------------------------------------------------AATATGTTGGATGTACCACAAGAAGCAAAGGTAAATTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 02:08 PM