ID:

dsi_9887

Coordinate:

3l:16298468-16298617 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_16298618_16298688_+]; exon [3l_16298618_16298688_+]; intron [3l_16297664_16298617_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## AACAGCGCTAAATAAAATCGTTTATAAATGTGGGTGCTCTCAAAATAAATCAGCCACACCCCAAATCCCACGGCTTCCAAAACTGACGAGTGACCACTGCACTCTGTAAAACATTTTCGCCAAACCAAAATTATCCGAATACACACCTTAACAAACACAAAGACTCATTCTGGCATTCGATTCTTGCCCTCTTTTTCCAGATCGCAATGATCCGGGACGCTTTTTCGGCGATGGCGTTCAGTTCAAGGCA ************************************************.....................(((...........(((((((.......))))).))...........)))..................................................((((.........))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
...............................................................................................................................................................................................................................TTCGGCGATGGCGTTCAGTTCAAGGC.	26	0	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................TTTTTCGGCGATGGCGTTCAGTTCAA....	26	0	1	1.00	1	0	1	0	0	0
........................................................................................................................CAAACCAAAATTATCCGAGT..............................................................................................................	20	1	2	0.50	1	0	0	1	0	0
......................................................................................................................................................................................................................................AGGGCGTTCAGTTCGATGCA	20	3	9	0.11	1	0	0	0	1	0
.............................................................................................ACACAGCACTCTGTAAA............................................................................................................................................	17	2	20	0.05	1	0	0	1	0	0
........................................................................................................................................................AAACACGAAGACGCATT.................................................................................	17	2	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

TTGTCGCGATTTATTTTAGCAAATATTTACACCCACGAGAGTTTTATTTAGTCGGTGTGGGGTTTAGGGTGCCGAAGGTTTTGACTGCTCACTGGTGACGTGAGACATTTTGTAAAAGCGGTTTGGTTTTAATAGGCTTATGTGTGGAATTGTTTGTGTTTCTGAGTAAGACCGTAAGCTAAGAACGGGAGAAAAAGGTCTAGCGTTACTAGGCCCTGCGAAAAAGCCGCTACCGCAAGTCAAGTTCCGT ************************************************.....................(((...........(((((((.......))))).))...........)))..................................................((((.........))))............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis
.........................................................................GAAGGTTTTGACTGC..................................................................................................................................................................	15	0	2	0.50	1	1	0	0	0	0	0	0	0
..................................................................................................................................................GAATTGTTTGGGTTTATGA.....................................................................................	19	2	2	0.50	1	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................AAAAAGCCGCTGCTACAAGT..........	20	3	13	0.46	6	0	0	5	0	0	0	0	1
................................................................................................................................................................................................AAAAGGACTAGCGTTGCT........................................	18	2	9	0.44	4	0	0	0	3	0	0	1	0
....................................................CGATGTGGGGTTTAGGGTGA..................................................................................................................................................................................	20	2	3	0.33	1	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................AAAAAAGGACTAGCGTTGCT........................................	20	3	8	0.13	1	0	0	0	0	0	1	0	0
............................................................................................................................................................................................................................AAAAAGCCTCTACCGCGGGT..........	20	3	8	0.13	1	1	0	0	0	0	0	0	0
.....................................................................................................................................TGGCTTATGTGTGGA......................................................................................................	15	1	17	0.06	1	0	0	0	0	0	1	0	0
...................................................................................................................................................................GAGTATGCCCGTAAG........................................................................	15	2	20	0.05	1	0	0	0	0	0	1	0	0

Generated: 04/24/2015 at 04:06 AM