dsi_9884

CGCCGGCGTGTGGAGCAGAATAAAAAAGAAGTAGCAGCAACGAGAATCGTGTAATTATTTCTTCAGCATTTGGCGTAAATTGTTTTGATTTCCTTGCCGAGAAATCAATAAAACCCTAAATGAAAATTTATTGAACTTCCCAGTGTGTGCGTGTGTGTGTCTGTGTGAAGTCGTGTGACAATGCTTATCAGTTGCACATGATCGTGTGTCTCTCGCGCGTTCTCTTCTCTCTCCCTCTCTCTCTTTCTCC ************************************************......(((((..((((((...(((((.((((..((((((((........))))))))........(((((....)))))..........))))...)))))....))).)))...)))))((((((.((((........))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M053 female body	M025 embryo	O002 Head	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs
..................................................................CATTTGGCGTAAATTGTTTTGAT.................................................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.................GAATAAAAAAGAAGTAGCAGCAACGAG..............................................................................................................................................................................................................	27	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................AGAAGTAGCAGCAACGAGAA............................................................................................................................................................................................................	20	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.........GTGGAGCAGAATAAAAAAGAA............................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
................................AGCAGCAACGAGAATCGT........................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................TGCACATGATCGTGTGTC........................................	18	0	1	1.00	1	1	0	0	0	0	0	0	0	0
................AGAATAAAAAAGAAGTAG........................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
........................AAAGAAGTAGCAGCAACGAGA.............................................................................................................................................................................................................	21	0	1	1.00	1	0	0	0	0	1	0	0	0	0
................................................................................................................................................................CTGTGTGAAATCGTGTG.........................................................................	17	1	2	0.50	1	0	0	0	0	0	1	0	0	0
.............................AGTAGCAGCAACGGGAAT...........................................................................................................................................................................................................	18	1	3	0.33	1	0	0	0	0	0	0	1	0	0
.........................................................................................................................GAACATTTATTGAAATTTCCAGT..........................................................................................................	23	3	4	0.25	1	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................GTCGTGAGACAGTGCT.................................................................	16	2	14	0.21	3	3	0	0	0	0	0	0	0	0
....................................................................................................................................................................GTGAGGTCGTGAGACA......................................................................	16	2	14	0.14	2	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................TGTGATGTCGTGAGACA......................................................................	17	2	7	0.14	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GTCGTGAGACAGTGCTTAG..............................................................	19	3	7	0.14	1	1	0	0	0	0	0	0	0	0
.............................AGTAGCAGCAACGGGAGT...........................................................................................................................................................................................................	18	2	20	0.10	2	0	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................CGTTCTCTTCTTTCT..................	15	1	19	0.05	1	0	0	0	0	0	0	0	0	1

GCGGCCGCACACCTCGTCTTATTTTTTCTTCATCGTCGTTGCTCTTAGCACATTAATAAAGAAGTCGTAAACCGCATTTAACAAAACTAAAGGAACGGCTCTTTAGTTATTTTGGGATTTACTTTTAAATAACTTGAAGGGTCACACACGCACACACACAGACACACTTCAGCACACTGTTACGAATAGTCAACGTGTACTAGCACACAGAGAGCGCGCAAGAGAAGAGAGAGGGAGAGAGAGAAAGAGG ************************************************......(((((..((((((...(((((.((((..((((((((........))))))))........(((((....)))))..........))))...)))))....))).)))...)))))((((((.((((........))))))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	O002 Head	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M024 male body
..............................................................................................................................................................................................................................AGAAGAGAGAGGGAGAGAGA........	20	0	1	1.00	1	0	1	0	0	0
............................................................................................................................................................................................GTCCACGTGTACTAGCACG...........................................	19	2	2	0.50	1	1	0	0	0	0
...................................TAGTTGCTCTTAGGACAT.....................................................................................................................................................................................................	18	2	3	0.33	1	1	0	0	0	0
................................TCATCGCTGCTCGTAGCACA......................................................................................................................................................................................................	20	3	3	0.33	1	1	0	0	0	0
....................................................TGAATAGAGAAGGCGTAAA...................................................................................................................................................................................	19	3	20	0.20	4	4	0	0	0	0
......................................................................................................................................................................................................GCTTGCACACAGAGGGCGC.................................	19	3	8	0.13	1	0	0	1	0	0
............................................................................TTTAGCGAAACTAAAGGAA...........................................................................................................................................................	19	2	11	0.09	1	1	0	0	0	0
...........................................................AGAAGTCCTAAACCG................................................................................................................................................................................	15	1	15	0.07	1	0	0	0	1	0
..................................TTCGTTGCTCGTAGCACA......................................................................................................................................................................................................	18	2	16	0.06	1	1	0	0	0	0
.................................CGTCGTTGGGGTTAGCACA......................................................................................................................................................................................................	19	3	18	0.06	1	0	0	0	0	1
..................................................................................................................................................................................................................................GAGAGAGGGAGAGAGAG.......	17	0	20	0.05	1	1	0	0	0	0
....................................................................................................CTTTAGTAATGTTGAGATTT..................................................................................................................................	20	3	20	0.05	1	1	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:6856126-6856375 -	dsi_9884	CG----CCGGCGTGTGGAGC-----AGA---A------TAA--AAAAGAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---TATTTCTT---CAGC-ATTTGGCGTAAAT-TGTTTTGATTTCCTT-GCCGAGAAATCAATAAAA--------------------------------CCCTAAATGAAAATTTATTGAACTTCCC-A--G--------TGTG-------------TGCGTG--T--GTGTGTC----TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTGTCT---------CTCGCGCGT----TCTCTTCTCTCTCCCT-C--------TC----T----CTCT-------------------------------------------------------TTCTCC
droSec2	scaffold_5:5485496-5485742 -		CG----CCGGCGTGTGGAGC-----AGA---AT-----AAA--AAAAGAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---TATTTCTT---CAGC-ATTTGGCGTAAAT-TGTTTTGATTTCCTT-GCCGAGAAATCAATAAAA--------------------------------CCCTAAATGAAAATTTATTGAACTTCCC-A--G--------TGTG-------------TGCGTG--T--GTGTGTC----TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTGTCT---------CTCGCGCGT----TCTCTTCTCTCT-----C--------TC----T----TTCT-------------------------------------------------------TTCTCC
dm3	chr3R:14410257-14410504 +		CG----CCGGCGTGTGGAGC-----AGA---ATA----CAA--AAAAAAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---TATTTCTT---CAGC-ATTTGGCGTAAAT-TGTTTTGATTTCCTT-GCCGAGAAATCAATAAAG--------------------------------CCCTAAATGAAAATTTATTGAACTTCCA-A--A--------CGTG-------------TGCGTGTGTGTGTGTG------TG-------------------------------------------TGTAAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTGTCT---------CTCCCGCGT----TCTCTTCTCTCT---------------C----T----CTCT-------------------------------------------------------TTCTCC
droEre2	scaffold_4770:7223435-7223669 -		CG----C--CGGCGTGGAGC-----AGA---A------TAA--AAAAGAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---TATTTCTT---CACC-ATTTGGCGTAAAT-TGTTTTGATTTCCTT-GCCGAGAAATCAATAAAG--------------------------------CTC-TAATGAAAATTTATTGAACTTCCA-A--G--------TGTG-------------TGCGTG------TGTG------TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTGACT---------CTCCCGCGC----TCTCTTCTCTCA-------------------------CTCT-------------------------------------------------------TTCTCC
droEug1	scf7180000409802:1619192-1619428 -		CG----C--GTTCGTGGAGT-----AGG---A------AAA--AGAAGAAG------GAGAAGCA---------------ACATA--------------AA----------TCGTGTAAA---TAATTCTT---CAGA-GCTTTGCGTAAAT-TGTTTTGATTTCTTT-AGCGAGAAATCAATAAAG--------------------------------CTC-AAATGAAAATTTATTGAACTACCA-A--G--------TGTG-------------TG----------TGTG------TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTTACT---------CTCGCGTGC----TCTCTTTT-----AA-GCTCTTTCTCCC----T----CTC------------------------------------------------------------TT
droBia1	scf7180000299102:1535093-1535317 -		CG----C--GTGCGTGGATC-----AGA---G------GGA--AGAAGAAG------CAGCAGCA---------------TCATA--------------AA----------TCGTGTAAT---TAACTCCT---CTGC-ATTTTGCGTAAAT-TGTTTTGATTTGCTC-AGCGAGAAATCAATAAAG--------------------------------CTC-GAATGAAAATTGATTGAACTGCCA-A--G--------TGTG-------------TGCG------------------TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGAGTGTCT---------CTCTCGCGC----TCTCT-----CTCTC-----------TC----T----CTC------------------------------------------------------------TT
droTak1	scf7180000415878:408044-408282 -		CG----C--GTGCGTGGAGC-----AGA---A-------AA-----AGAAG------CAGGAGCA---------------ACATA--------------AA----------TCGTGTAAA---TAATTCTT---CTGC-ATTTTGCGTAAATTTGTTTTGATTTCTCC-AGCGAGAAATCAATAAAG--------------------------------CTC-AAATGAAAATTTATTGAACTACCG-A--G--------TGTG-------------TG------TGTGTGCG------TT-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTTTGTCT---------CTCCCGCGC----TCCGCTCTCTCT-----CTC------------TTTCTCTCT-------------------------------------------------------AT-TCC
droEle1	scf7180000491008:1827165-1827389 -		GGCTCG--CGTGCGTGGATC-----AGA---A------AGA--AGAAGAAG------GAGCAGCA---------------ACATA--------------AA----------TTGTGTAAT---TAATTCTT---CAGC-ATTTTGCGTAAAC-TGTTTTGATTTCTTT-GGCGAGAAATCAATAAAG--------------------------------CTC-AAATGAAAATTTATTGAACTAC---------------TGTG-------------TCCGTGTGTGTGCATG------TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATTGTTCTATT---------------------------------T-----C--------AC----T----TTCT-------------------------------------------------------TTTCCC
droRho1	scf7180000779243:16602-16822 -		CG--CG--CGTGCGTGGAGC-----AGA---A------AAA--AGAAGAAG------AAGGAGCA---------------GCAA---------------CA----------TTGTGTAAT---TAATTCTT---TAGCTTTTTTGCGTAAAT-TGTTTTGATTTCTTT-GGCAAGAAATCAATAAAG--------------------------------CTT-AAATGAAAATTTATTGAACTTC---------------TGTG-------------TGCGCG--A--GTGTG------TT-------------------------------------------TATAAAGTCGTGTGACAG----------CGCTTATC--AGTTGCACATGATCGCTCTATT----------------------TC-------TC---------------TC----T----CACT-------------------------------------------------------TTTCCC
droFic1	scf7180000453800:889333-889630 +		CG----C--GTGCGTGGAG-------------------AAA--AGAAGGAG------TAGCAGCA------------------TA------TGAA----TA----------TCGTGTAAA---TGATTCTT---CAGC-ATTTTGCGTTAAT-TGTTTTGATTTCTTT-TGCGAGAAATCAATAAAG--------------------------------CTC-AAATGAAAATTTATTGAACTACT--A--C--------TGTG-------------TGTGCA--A--GTGTGTT----TG-------------------------------------------TGTGAAGTCGTGTGACAG----------TGCTTATC--AGTTGCACATGATCGTGTGACT---------CTCCCGTCC----TCTCT-----TTCCG-----------GCTCTCTTGCTTTTGATTTATTATGAAATTTGTCTGCAGAAATAAACTCATTGAGCTATTTTTCCATTCTTTTCAT
droKik1	scf7180000302699:111527-111792 +		CG--CG--CGTGCGTGGAGTAGCAGAGG---A------GAA--GGAAGAGGAAGAATAGGCCG------AAA---CCGCAACAAG--------------A-----------ACGTGTAATTAATAATTCTT---CATC-TTTTTGCGTAAAT-TGTTTTGATTTCTTTTGGCGTGAAATCAATAAAG--------------------------------CAC-AAATGTATATTTATTGAACCAAT--A--G--------TGAG-------------TGTGTG--TGCGTGTG------GGTGTGATG-----------AAAC------------------------GAAGTCGTGTGACAT----------TTCTTATC--AGTTGCACATGATCGTGTGACT---------TTAG----T----TATCT---TTCG-----CTCTTTC--GT----C----CCC------------------------------------------------------------TT
droAna3	scaffold_13340:9702866-9703129 -		TG----C------GTAGATC-----AGG---AGAAGTACAA--AGAAGAAG------CAGCAGTC-TTC-AGT--CTCCAGCGAC--------------AG----CAGTC-TCCTGTAAT---TAATTCTT---TACA-AATTTGCGTAAAT-TGTTTTGATTTCTTT-GGCGTGAAATCAATAAGG--------------------------------A---AAATGAAAATTTATTGAACCAAT--A--GTGACAGAGTGTATGTGTGTAGTGTGTGAGTG--T--GTGTGTGTGTGTATGTGACG-----------AATC------------------------GAAGTCGTGTGACAG----------AGCTTATC--AGTTGCACATGATCGTG-GTTT---------CTCTCGG----------------------------------------------------------------------------------------------------------CT
droBip1	scf7180000396691:2408674-2408922 -		CG--CG--CGTGCGTAGATC-----AGA---AGA----AAA--AGAAGAAG------AAGCAGCAG---AAGTTCCAGCAGCAA------------------CAGCTGTC-TCCTGTAAT---TAATTCTT---CACA-ATTTTGCGTAAAT-TGTTTTGATTTCTGT-GGCGTGAAATCAATAAGG--------------------------------C---AAATTAAAATTTATTGAACCAAT--A--GTGCCAC--TGTG-------------TA----------TGTG------TCTGTGACG-----------AAT------------------------CGAAGTCGTGTGACAA----------AGCTTATC--AGTTGCACATGATCGTGGATCG---------GCAG--GGC----T-------------------------------------GCT-------------------------------------------------------CTCCCC
dp5	2:11767983-11768300 -		CG--CG--CGTGCGTCGAGA-----AGG---AG-------AAGAGGAGGAG----------AAC---------------AACAAC--------------A-ACATCAAACACAATGTAAT---GGTTTCTT---CATA-ATTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAA--------------------------------ACAGAAATGAAAATTTATTGAACTCTCCGCAAG--------TGTGTGCAAGTTTTGTGTGTGTGTGTGTGTGTG------TCTGTGATGATGTT-----GAAACGAAATCAATTTTTTTCCACTGTACGCGGTCGTGTGACAACGCAGACTTGTGCTTATC--ATTTGCACATGATCGTGTGACT-----GCACCTCGCTCGCTCGCTCTC-----TCTCCA-----------------T----CTC---------------------------------------------------------T-TCC
droPer2	scaffold_0:8746944-8747251 +		CG--CG--CGTGCGTCGAGA-----AGG---AG-------AAGAGGAGGAG----------AAC---------------AACAAC--------------A-ACATCAAACACAATGTAAC---GGTTTCTT---CATA-ATTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAA--------------------------------ACAGAAATGAAAATTTATTGAACTCTCCGCAAG--------TGTGTGCAAGTTTT------GTGTGTGTGTGTG------TCTGTGATGATGTT-----GAAACGAAATCAATTTTTTTCCACTGTACGCGGTCGTGTGACAACGCAGACTTGTGCTTATC--ATTTGCACATGATCGTGTGACT-----GCACCTCGCTCGC----TCTC-----TCTCCA-----------------T----CTC---------------------------------------------------------T-TCC
droVir3	scaffold_12855:4436043-4436250 -		------------------------------------------------------------------------------------------------------------------------------TTATA---CATT-GTTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAAATGAGAAAT-----------------GCA-GGCCT-TAATCGAAACTAATTGAACTCT---------------TGTG-------------ATCGCC--C-----------------------------ATCG-----AGA-CAATTTTC--------TTTGCGGTCGTGTGACAACACACGC---TGCTTATC--ATTTTCACATGATCGTGTGAGCA-T------ATACCCCGC----TACCCTCCCCCC-------------------------GCAG-------------------------------------------------------TTGCCT
droMoj3	scaffold_6540:8791886-8792161 -		AG-------------------------A---G------AGA--GAAAGAAG------GCGCATCT---------------ACTGCAAAATGTAATTACC--GT------AGCA-----ATGAAGAAATCAT---CATA-GTTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAAATGCGAAAT-----------------GCAGGGCCT-TAATCGAAACTAATTGAACTCT---------------TGTG-------------ATCGCC----------------------------GCCCATCG-----AGA-CAATTTCCTT------TGCGCGGTCGTGTGACACAACGCGC---TGCTTATC--ATTTTCACATGATCGTGCGAGCGGTATGCCCCTCCCTCCA----ACACCGCCCACT-----------C--AA----C----CCA------------------------------------------------------------TC
droGri2	scaffold_14906:6995600-6995843 -		GG---------------AGC-----GCACTGAA-----AAA--AAAGTAAT------TACCA----------------TAGCAA------------------TAGC------A-----ATGAAGAAATCATCATAGTT-GTTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAATATCGAA-TATCGCAGTGCAACAGCAGCA-GGCCC-TAATCGAAACTAATAGAACTCT---------------TGTG-------------ATCGCC--A--G---------------------------------------CAATTTACTTA-----CGATCGGTCGTGTGACAACACAGCT---TGCTTATCACATTTTCACATGATCGTGTGACC---------ATC----------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CG----CCGGCGTGTGGAGC-----AGA---A------TAA--AAAAGAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---TATTTCTT---CAGC-ATTTGGCGTAAAT-TGTTTTGATTTCCTT-GCCGAGAAATCAATAAAA--------------------------------CCCTAAATGAAAATTTATTGAACTTCCC-A--G--------TGTG-------------TGCGTG--T--GTGTGTC----TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTGTCT---------CTCGCGCGT----TCTCTTCTCTCTCCCT-C--------TC----T----CTCT-------------------------------------------------------TTCTCC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................................................C-ATTTGGCGTAAAT-TGTTTTGAT..............................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GA---A------TAA--AAAAGAAG------TAGCAGCA---------------ACGAG--------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................AGAAG------TAGCAGCA---------------ACGAG--------------AA----------.................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............GTGGAGC-----AGA---A------TAA--AAAAGAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..........................................................AGCAGCA---------------ACGAG--------------AA----------TCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................TGCACATGATCGTGTGTC.............................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................AGA---A------TAA--AAAAGAAG------TAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................AAAGAAG------TAGCAGCA---------------ACGAG--------------A............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

CG----CCGGCGTGTGGAGC-----AGA---AT-----AAA--AAAAGAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---TATTTCTT---CAGC-ATTTGGCGTAAAT-TGTTTTGATTTCCTT-GCCGAGAAATCAATAAAA--------------------------------CCCTAAATGAAAATTTATTGAACTTCCC-A--G--------TGTG-------------TGCGTG--T--GTGTGTC----TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTGTCT---------CTCGCGCGT----TCTCTTCTCTCT-----C--------TC----T----TTCT-------------------------------------------------------TTCTCC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................AGAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTG............................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0
..................................................G------TAGCAGCA---------------ACGAG--------------AA----------TCGTA............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.............................................AAGAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTG............................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0
...............................AT-----AAA--AAAAGAAG------TAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..........................................................AGCAGCA---------------ACGAG--------------AA----------TCGTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
..............................................AGAAG------TAGCAGCA---------------ACGAG--------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0

dm3

CG----CCGGCGTGTGGAGC-----AGA---ATA----CAA--AAAAAAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---TATTTCTT---CAGC-ATTTGGCGTAAAT-TGTTTTGATTTCCTT-GCCGAGAAATCAATAAAG--------------------------------CCCTAAATGAAAATTTATTGAACTTCCA-A--A--------CGTG-------------TGCGTGTGTGTGTGTG------TG-------------------------------------------TGTAAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTGTCT---------CTCCCGCGT----TCTCTTCTCTCT---------------C----T----CTCT-------------------------------------------------------TTCTCC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................GCAGCA---------------ACGAG--------------AA----------TCGTG............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................TATC--AGTTGCACATGATCGTGTGTC.............................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................AGCAGCA---------------ACGAG--------------AA----------TCGT.............................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---.....................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TTCCA-A--A--------CGTG-------------TGCGTGTGTGTG...............................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................CTTCCA-A--A--------CGTG-------------TGCGTGTGTG.................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................................................................................................GTGTGTGTGTGTG------TG-------------------------------------------TGTAAA..................................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................GCGTGTGTGTGTGTG------TG-------------------------------------------TGT.....................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................CGTG-------------TGCGTGTGTGTGTGTG------T....................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GTG-------------TGCGTGTGTGTGTGT............................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GTG-------------TGCGTGTGTGTGTGTG------T....................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GTGTGTGTGTG------TG-------------------------------------------TGTAA...................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................GTGTGTGTGTGTG------TG-------------------------------------------TGTAA...................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................TGCGTGTGTGTGTGTG------TG-------------------------------------------T.......................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CG----C--CGGCGTGGAGC-----AGA---A------TAA--AAAAGAAG------TAGCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---TATTTCTT---CACC-ATTTGGCGTAAAT-TGTTTTGATTTCCTT-GCCGAGAAATCAATAAAG--------------------------------CTC-TAATGAAAATTTATTGAACTTCCA-A--G--------TGTG-------------TGCGTG------TGTG------TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTGACT---------CTCCCGCGC----TCTCTTCTCTCA-------------------------CTCT-------------------------------------------------------TTCTCC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................TTCCA-A--G--------TGTG-------------TGCGTG------TG.............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
......................................TAA--AAAAGAAG------TAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...............GGAGC-----AGA---A------TAA--AAAAGAAG------TAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0
...............GGAGC-----AGA---A------TAA--AAAAGAAG------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
...............GGAGC-----AGA---A------TAA--AAAAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..................GC-----AGA---A------TAA--AAAAGAAG------T......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
..................................................G------TAGCAGCA---------------ACGAG--------------AA----------TCGTGTAAT---.....................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
...........................................................GCAGCA---------------ACGAG--------------AA----------TCGTAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................	20	7	0.14	1	0	0	0	0	1	0	0

droEug1

CG----C--GTTCGTGGAGT-----AGG---A------AAA--AGAAGAAG------GAGAAGCA---------------ACATA--------------AA----------TCGTGTAAA---TAATTCTT---CAGA-GCTTTGCGTAAAT-TGTTTTGATTTCTTT-AGCGAGAAATCAATAAAG--------------------------------CTC-AAATGAAAATTTATTGAACTACCA-A--G--------TGTG-------------TG----------TGTG------TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTGTTACT---------CTCGCGTGC----TCTCTTTT-----AA-GCTCTTTCTCCC----T----CTC------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CG----C--GTGCGTGGATC-----AGA---G------GGA--AGAAGAAG------CAGCAGCA---------------TCATA--------------AA----------TCGTGTAAT---TAACTCCT---CTGC-ATTTTGCGTAAAT-TGTTTTGATTTGCTC-AGCGAGAAATCAATAAAG--------------------------------CTC-GAATGAAAATTGATTGAACTGCCA-A--G--------TGTG-------------TGCG------------------TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGAGTGTCT---------CTCTCGCGC----TCTCT-----CTCTC-----------TC----T----CTC------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CG----C--GTGCGTGGAGC-----AGA---A-------AA-----AGAAG------CAGGAGCA---------------ACATA--------------AA----------TCGTGTAAA---TAATTCTT---CTGC-ATTTTGCGTAAATTTGTTTTGATTTCTCC-AGCGAGAAATCAATAAAG--------------------------------CTC-AAATGAAAATTTATTGAACTACCG-A--G--------TGTG-------------TG------TGTGTGCG------TT-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATCGTTTGTCT---------CTCCCGCGC----TCCGCTCTCTCT-----CTC------------TTTCTCTCT-------------------------------------------------------AT-TCC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GGCTCG--CGTGCGTGGATC-----AGA---A------AGA--AGAAGAAG------GAGCAGCA---------------ACATA--------------AA----------TTGTGTAAT---TAATTCTT---CAGC-ATTTTGCGTAAAC-TGTTTTGATTTCTTT-GGCGAGAAATCAATAAAG--------------------------------CTC-AAATGAAAATTTATTGAACTAC---------------TGTG-------------TCCGTGTGTGTGCATG------TG-------------------------------------------TGTGAAGTCGTGTGACAA----------TGCTTATC--AGTTGCACATGATTGTTCTATT---------------------------------T-----C--------AC----T----TTCT-------------------------------------------------------TTTCCC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CG--CG--CGTGCGTGGAGC-----AGA---A------AAA--AGAAGAAG------AAGGAGCA---------------GCAA---------------CA----------TTGTGTAAT---TAATTCTT---TAGCTTTTTTGCGTAAAT-TGTTTTGATTTCTTT-GGCAAGAAATCAATAAAG--------------------------------CTT-AAATGAAAATTTATTGAACTTC---------------TGTG-------------TGCGCG--A--GTGTG------TT-------------------------------------------TATAAAGTCGTGTGACAG----------CGCTTATC--AGTTGCACATGATCGCTCTATT----------------------TC-------TC---------------TC----T----CACT-------------------------------------------------------TTTCCC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CG----C--GTGCGTGGAG-------------------AAA--AGAAGGAG------TAGCAGCA------------------TA------TGAA----TA----------TCGTGTAAA---TGATTCTT---CAGC-ATTTTGCGTTAAT-TGTTTTGATTTCTTT-TGCGAGAAATCAATAAAG--------------------------------CTC-AAATGAAAATTTATTGAACTACT--A--C--------TGTG-------------TGTGCA--A--GTGTGTT----TG-------------------------------------------TGTGAAGTCGTGTGACAG----------TGCTTATC--AGTTGCACATGATCGTGTGACT---------CTCCCGTCC----TCTCT-----TTCCG-----------GCTCTCTTGCTTTTGATTTATTATGAAATTTGTCTGCAGAAATAAACTCATTGAGCTATTTTTCCATTCTTTTCAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CG--CG--CGTGCGTGGAGTAGCAGAGG---A------GAA--GGAAGAGGAAGAATAGGCCG------AAA---CCGCAACAAG--------------A-----------ACGTGTAATTAATAATTCTT---CATC-TTTTTGCGTAAAT-TGTTTTGATTTCTTTTGGCGTGAAATCAATAAAG--------------------------------CAC-AAATGTATATTTATTGAACCAAT--A--G--------TGAG-------------TGTGTG--TGCGTGTG------GGTGTGATG-----------AAAC------------------------GAAGTCGTGTGACAT----------TTCTTATC--AGTTGCACATGATCGTGTGACT---------TTAG----T----TATCT---TTCG-----CTCTTTC--GT----C----CCC------------------------------------------------------------TT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TG----C------GTAGATC-----AGG---AGAAGTACAA--AGAAGAAG------CAGCAGTC-TTC-AGT--CTCCAGCGAC--------------AG----CAGTC-TCCTGTAAT---TAATTCTT---TACA-AATTTGCGTAAAT-TGTTTTGATTTCTTT-GGCGTGAAATCAATAAGG--------------------------------A---AAATGAAAATTTATTGAACCAAT--A--GTGACAGAGTGTATGTGTGTAGTGTGTGAGTG--T--GTGTGTGTGTGTATGTGACG-----------AATC------------------------GAAGTCGTGTGACAG----------AGCTTATC--AGTTGCACATGATCGTG-GTTT---------CTCTCGG----------------------------------------------------------------------------------------------------------CT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................GAAGTACAA--AGAAGAAG------CAGCAGTC-TT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................ACAG----------AGCTTATC--AGTTGCACATGATC....................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
...................................GTACAA--AGAAGAAG------CAGCAGTC-TTC-A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
................................................AAG------CAGCAGTC-TTC-AGT--CT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
..................................................G------CAGCAGTC-TTC-AGT--CTCCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................GTGTGTGTGTATGTGACG-----------AATC------------------------GAAGTC...............................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
................................................AAG------CAGCAGTC-TTC-AGT--CTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................CCAGCGAC--------------AG----CAGTC-TCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.................................................AG------CAGCAGTC-TTC-AGT--CTCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................GTGTGTGAGTG--T--GTGTGTGTGTGTA...................................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................GAGTG--T--GTGTGTGTGTGTATGT................................................................................................................................................................................................................................	22	6	0.17	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................GTGTGTGAGTG--T--GTGTGTGTGTGT....................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
.....................................ACAA--AGAAGAAG------CAGCACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0

droBip1

CG--CG--CGTGCGTAGATC-----AGA---AGA----AAA--AGAAGAAG------AAGCAGCAG---AAGTTCCAGCAGCAA------------------CAGCTGTC-TCCTGTAAT---TAATTCTT---CACA-ATTTTGCGTAAAT-TGTTTTGATTTCTGT-GGCGTGAAATCAATAAGG--------------------------------C---AAATTAAAATTTATTGAACCAAT--A--GTGCCAC--TGTG-------------TA----------TGTG------TCTGTGACG-----------AAT------------------------CGAAGTCGTGTGACAA----------AGCTTATC--AGTTGCACATGATCGTGGATCG---------GCAG--GGC----T-------------------------------------GCT-------------------------------------------------------CTCCCC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CG--CG--CGTGCGTCGAGA-----AGG---AG-------AAGAGGAGGAG----------AAC---------------AACAAC--------------A-ACATCAAACACAATGTAAT---GGTTTCTT---CATA-ATTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAA--------------------------------ACAGAAATGAAAATTTATTGAACTCTCCGCAAG--------TGTGTGCAAGTTTTGTGTGTGTGTGTGTGTGTG------TCTGTGATGATGTT-----GAAACGAAATCAATTTTTTTCCACTGTACGCGGTCGTGTGACAACGCAGACTTGTGCTTATC--ATTTGCACATGATCGTGTGACT-----GCACCTCGCTCGCTCGCTCTC-----TCTCCA-----------------T----CTC---------------------------------------------------------T-TCC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........GCGTCGAGA-----AGG---AG-------AAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GTGCGTCGAGA-----AGG---AG-------AAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................ACATGATCGTGTGACT-----GCAC...................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................GAGGAGGAG----------AAC---------------AACAAC--------------A-AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................GAGA-----AGG---AG-------AAGAGGAGGAG----------...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................GTTTTGATTTCTTT-TGCGTGA................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GTGCGTCGAGA-----AGG---AG-------AAGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TTTTCCACTGTACGCGGTCGT.............................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0

droPer2

CG--CG--CGTGCGTCGAGA-----AGG---AG-------AAGAGGAGGAG----------AAC---------------AACAAC--------------A-ACATCAAACACAATGTAAC---GGTTTCTT---CATA-ATTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAA--------------------------------ACAGAAATGAAAATTTATTGAACTCTCCGCAAG--------TGTGTGCAAGTTTT------GTGTGTGTGTGTG------TCTGTGATGATGTT-----GAAACGAAATCAATTTTTTTCCACTGTACGCGGTCGTGTGACAACGCAGACTTGTGCTTATC--ATTTGCACATGATCGTGTGACT-----GCACCTCGCTCGC----TCTC-----TCTCCA-----------------T----CTC---------------------------------------------------------T-TCC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................TGACT-----GCACCTCGCTCGC----T.....................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.........GTGCGTCGAGA-----AGG---AG-------AAGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.................AGA-----AGG---AG-------AAGAGGAGGAG----------AA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................G---AG-------AAGAGGAGGAG----------AAC---------------AACAAC--------------A-AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............GTCGAGA-----AGG---AG-------AAGAGGAGGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................GTGACT-----GCACCTCGCTCGC----TCTC-----TCT..........................................................................................	26	1	1.00	1	1	0	0	0	0	0
.............GTCGAGA-----AGG---AG-------AAGAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................GAACTCTCCGCAAG--------TGTGTG......................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
...............................AG-------AAGAGGAGGAG----------AAC---------------AACAAC--------------A-ACATC......................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0

droVir3

------------------------------------------------------------------------------------------------------------------------------TTATA---CATT-GTTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAAATGAGAAAT-----------------GCA-GGCCT-TAATCGAAACTAATTGAACTCT---------------TGTG-------------ATCGCC--C-----------------------------ATCG-----AGA-CAATTTTC--------TTTGCGGTCGTGTGACAACACACGC---TGCTTATC--ATTTTCACATGATCGTGTGAGCA-T------ATACCCCGC----TACCCTCCCCCC-------------------------GCAG-------------------------------------------------------TTGCCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
....................................................................................................................................................................................................................................................................................................................................AGA-CAATTTTC--------TTTGCGGTCCA.............................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................GTGACAACACACGC---TGCTTATC--..................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................GAACTCT---------------TGTG-------------ATCGCC--C-----------------------------ATC..................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................AT-TGTTTTGATTTCTTT-TGCGTGAAAT.............................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AG-------------------------A---G------AGA--GAAAGAAG------GCGCATCT---------------ACTGCAAAATGTAATTACC--GT------AGCA-----ATGAAGAAATCAT---CATA-GTTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAAATGCGAAAT-----------------GCAGGGCCT-TAATCGAAACTAATTGAACTCT---------------TGTG-------------ATCGCC----------------------------GCCCATCG-----AGA-CAATTTCCTT------TGCGCGGTCGTGTGACACAACGCGC---TGCTTATC--ATTTTCACATGATCGTGCGAGCGGTATGCCCCTCCCTCCA----ACACCGCCCACT-----------C--AA----C----CCA------------------------------------------------------------TC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................................................................................................AATTGAACTCT---------------TGTG-------------ATCGCC----------------------------.........................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0

droGri2

GG---------------AGC-----GCACTGAA-----AAA--AAAGTAAT------TACCA----------------TAGCAA------------------TAGC------A-----ATGAAGAAATCATCATAGTT-GTTTTGCGTAAAT-TGTTTTGATTTCTTT-TGCGTGAAATCAATAAAATATCGAA-TATCGCAGTGCAACAGCAGCA-GGCCC-TAATCGAAACTAATAGAACTCT---------------TGTG-------------ATCGCC--A--G---------------------------------------CAATTTACTTA-----CGATCGGTCGTGTGACAACACAGCT---TGCTTATCACATTTTCACATGATCGTGTGACC---------ATC----------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................TAGTT-GTTTTGCGTAAAT-TG.....................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0

dsi_9884

3r:6856176-6856325 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.2	-26.2	-26.2