ID:

dsi_988

 Coordinate:

x:12560219-12560368 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-14.6

Flybase annnotation

five_prime_UTR [x_12560369_12560547_+]; exon [x_12560369_12560547_+]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+
mature
  1. 2l:10450423-10450438 +
  2. 2l:10687115-10687130 +
  3. 2l:12193524-12193539 +
  4. 2l:18270899-18270914 +
  5. 2r:9736513-9736528 +
  6. 3l:3895884-3895899 +
  7. 3l:6600590-6600605 +
  8. 3l:6600746-6600761 +
  9. 3l:6617579-6617594 +
  10. 3l:14393329-14393344 +
  11. 3l:14860664-14860679 +
  12. 3l:18384550-18384565 +
  13. 3r:7321707-7321722 +
  14. 3r:11606731-11606746 +
  15. 3r:24746400-24746415 +
  16. x:2136780-2136795 +
  17. x:6192113-6192128 +
  18. x:11775297-11775312 +
  19. x:11942046-11942061 +
  20. dsi_988  x:12560271-12560286 +
star
  1. 2l:225645-225660 +
  2. 2l:9605482-9605497 +
  3. 2l:10688689-10688704 +
  4. 2l:12037469-12037484 +
  5. 2r:7210451-7210466 +
  6. 2r:16771719-16771734 +
  7. 3l:9933303-9933318 +
  8. 3l:10852664-10852679 +
  9. 3l:15442855-15442870 +
  10. 3l:21670174-21670189 +
  11. 3r:7357635-7357650 +
  12. 3r:10932295-10932310 +
  13. 3r:13952566-13952581 +
  14. 3r:19808953-19808968 +
  15. x:11964722-11964737 +
  16. x:12324965-12324980 +
  17. dsi_988  x:12560235-12560250 +
  18. x:16936030-16936045 +
  19. x:17001408-17001423 +
  20. x:18448795-18448810 +

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGATGGGATTTATTGGTAGGACTCCCGTAAATGAAAGCTGATGCTGCTCCCGTGTTGCTGCTGCGGTTGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGTTGCTGCTGCTCATCGCCGGCGGAGCTCTCAGCGAGTTCGGTTCGGTTTGGCTCGTTTGGGTTCCGTTTTTTTAGAGCAGAGTCGACCAGTTGAGCTTTTGCTGCGATCGCGTGCGGCTGGCTCGGGGTCTCGTCTGT
******************************************************************......((.((.((.((.((.((.((....)).)).)).)).)).)).))..************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
............................................................................................................................................................................................................................CGCGTGAGGCTGGCT............... 15 1 1 5.00 5 5 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................CTGCGATCGCGTGCGGCT................... 18 0 1 2.00 2 0 2 0 0 0 0 0 0
............................................................................................................................................................................................................GAGCTTTTGCTGCGATCGCG.......................... 20 0 1 2.00 2 0 1 0 0 0 0 1 0
........................................................................................................................................................................................................AGTTGAGCTTTTGCTGCGATCGCG.......................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0
............................................................................................................................................................................................GCAGAGTCGACCAGTTGAGCA......................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0
........ATTTATTGGTAGGACTCTCGTA............................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 0 1
........................................................................................................................................................................................TAGAGCAGAGTCAACCAGATGA............................................ 22 2 1 1.00 1 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................CTGGGTCGGGGTTTCGT.... 17 2 16 0.94 15 2 0 0 10 3 0 0 0
..........................................................................................................................................TCTCAGCGACTTCGGT................................................................................................ 16 1 2 0.50 1 0 0 0 0 1 0 0 0
................................................................................................................................................CAAGTTCGGTTCGGTTTGGAT..................................................................................... 21 2 2 0.50 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................GCGGCGATCCCGTGCAGCTGG................. 21 3 3 0.33 1 0 0 0 0 1 0 0 0
...........................................................................................................TGTTGTTGCTGATGCTCATC........................................................................................................................... 20 1 4 0.25 1 0 0 1 0 0 0 0 0
.....GGGAATTATTGGTTGAACTC................................................................................................................................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0 0 0 0
...........................................................................................................................................CTCAGTGAGTTCATTTCGGTT.......................................................................................... 21 3 6 0.17 1 0 0 0 1 0 0 0 0
................GTAGGCCTCCCGTCAAT......................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................GGCTCGGGGTTTCGT.... 15 1 7 0.14 1 0 0 0 1 0 0 0 0
......................................................................................................GCTGCTGTTGTTGCTG.................................................................................................................................... 16 0 20 0.10 2 0 0 2 0 0 0 0 0
...........................................................................................................................................................................................................................CCGCGTGAGGCTGGCT............... 16 2 10 0.10 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................ACGCGTGAGGCTGGCT............... 16 2 14 0.07 1 1 0 0 0 0 0 0 0
...........................................................................................................TGTTGTTGATGCTGCTCAGC........................................................................................................................... 20 2 15 0.07 1 0 0 0 0 0 1 0 0
..................................................................GTTGTTGCTGCTGCTG........................................................................................................................................................................ 16 0 20 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................CTGCTGCTGTTGTTGCTG.................................................................................................................................... 18 0 20 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................TCGTTTCGGCTGCGTTTTTTT................................................................. 21 3 20 0.05 1 0 0 0 0 0 0 1 0
..................................................................................................TGCTGCTGCTGTTGTTGCTGC................................................................................................................................... 21 0 20 0.05 1 0 0 1 0 0 0 0 0
...................................................................................................GCTGCTGCTGTTGTTGCTGC................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0 0 0 0
............................................................GCTGCGGTTGTAGCTACT............................................................................................................................................................................ 18 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

AGCTACCCTAAATAACCATCCTGAGGGCATTTACTTTCGACTACGACGAGGGCACAACGACGACGCCAACAACGACGACGACGACGACGACGACGACGACGACGACGACAACAACGACGACGAGTAGCGGCCGCCTCGAGAGTCGCTCAAGCCAAGCCAAACCGAGCAAACCCAAGGCAAAAAAATCTCGTCTCAGCTGGTCAACTCGAAAACGACGCTAGCGCACGCCGACCGAGCCCCAGAGCAGACA
************************************************************************************************************************************......((.((.((.((.((.((.((....)).)).)).)).)).)).))..****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
...............................................................CGCCAACAACGACGACGACGA...................................................................................................................................................................... 21 0 3 1.00 3 3 0 0 0 0
........................................................................................................................................................................................................TCAGCTCGAAAACGAC.................................. 16 1 2 0.50 1 0 1 0 0 0
..................................................................................................................................................................................................AGATGGTCAACTCGA......................................... 15 1 7 0.14 1 0 0 1 0 0
..........................................................................................CGACGAAGACGACGACGACAACAACGACG................................................................................................................................... 29 1 15 0.07 1 0 0 0 1 0
.......................................................................................................................................................................................................GCCAGCTCGAAAACGAC.................................. 17 2 20 0.05 1 0 1 0 0 0
.................................................................................................GACGACGACGACAACAACGACG................................................................................................................................... 22 0 20 0.05 1 0 0 0 0 1
..................................................................................................................................................TCAAGCCATCCCAAACC....................................................................................... 17 2 20 0.05 1 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:12560169-12560418 + dsi_988 TCGATGGGATTT--------------AT-TGGTAG---GACTCCCGTAAAT-----------GAAAGCTGAT-------------------------------------------GCTG-CTCC-CGTGTTGC---------------------TGCTGCG---G--T--------------------TGTTG------CTGCT------------------------------------------------------------------------------------------------GCTGCTGCT------G---CTGCTGCT--GCTG---CTGC------TGC-----TGT---TGTTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTGT
droSec2 scaffold_10:1342932-1343161 - GT-------------------------------TG---GGCTGTTGTTGTT-----------GGCCGCTGGA-------------------------------------------GCTG-TTCC-CCTGCTGC---------------------TGCTGCT---G--C--------------------TGTTG------CTGTT------------------------------------------------------------------------------------------------GC------TGCTGCTG---TTGTTGCG--ACAT---CTGG------TGCTGC--TGT---TGCTGCTGCTGCT--GGGG-CAGCAG---GGCGGT-----CATT------------GAG--------------------------------------------------------------------------------------------------AGGC--CGCCGTTGCTCCCGCCGCTGCTGCTCCCGTTGGCTGCAAATGTGGAGAGGTTAAGGCCACAGATGCCG--GAG-------------GCACTTGTGATGGCTGTAGGTC---------
dm3 chrX:13215164-13215389 + TCGATGGGATTT--------------AT-TGGTAG---GACTCCCGTAAAT-----------GAAAGCTGAT-------------------------------------------GCTG-CTCC-CGTGTTGC---------------------TGCTGTT---G--C--------------------GGTTG------CTGCT------------------------------------------------------------------------------------------------GC--------------------------------------------TGC-----TGC---TGTTGTTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTGT
droEre2 scaffold_4690:13657705-13657950 - TCGATGGGATTT--------------AT-TGGTAG---GACTCCCGTAAAT-----------GAAAGCTGAT-------------------------------------------GCTG-CTCC-CGTGTTGC---------------------TGTTGCT---G--C--------------------TGTTG------CTGCT------------------------------------------------------------------------------------------------GCTGTTGCT------G---CTGT--------------TGCTGCCGCTGT-----TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----T-TTGGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCTG------------------GGTCTC-GTCTGT
droYak3 X:7493471-7493744 + GCAATGGGATTTATTGCTAGGATTT-AT-TGGTAG---GACTCTCGTAAAT-----------GAAAGCTGATGCTGATGC-------------------------------------GG-C------TGTTGC------TGTTGCTGCTGCTGC---GGCT---G--C----------TGCGACTG-------------------------T------------------------------------------------------------------------------------T------GC---T------G---CTGCTGTT--GCTGTTGCTGC------TGC-----TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CGGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTGGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTCGGTCTGT
droEug1 scf7180000408958:390074-390333 - TCGATTTGATTT--------------TT-TGGTAG---GACTCCCAAAACA-----------GAAAGCTGATGTTGCTGTT----------------------------------GCTG-CTGC-CGTGTTGCTGT------------------TGCTGCT---G--C--------------------TGTTG------CTGTT------------------------------------------------------------------------------------------------GC------TGCTGCTG---TTGCTGCT--GC------TGC---TGCTGC-----TGC---TACTGCTGCTACTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT------TTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTCT
droBia1 scf7180000298389:1178548-1178754 + TGGATTTGATTT---------------T-TGGTAG---GACAC-CGAGTCG-----------GAGAGCTGATGTCGCCGTT--------------------GCTGCC------GTGTGG-CTCC-CG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CGGC------------GAGTGCGG-TCGGTTTGGCTCGTCTGGGT--------------------------TCCGCTT------TTGGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTC-C-GTCTCT
droTak1 scf7180000414740:14909-15163 + TCGATTGGATTT--------------ATTTGGTAG---GACTCCCGAAACA-----------GAAAGCTGATGTTGCTGCT--------------------GCTGCC------GTGTTG-CTCC-CGTGTTGC---------------------TGTTGCT---C--C----------------CGTG--TTG------CT------------------------------------------------------------------------------------------------------GT---------------TG---CT--GCTG---TTGC------TGT-----TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGCTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTCT
droEle1 scf7180000491001:1807526-1807865 - TTGATAGGATTT-----------------TGGTAGG--GACACACGAAGCA-----------GAATGCTGGTGTTGCTGCTATTACTGTTTCTGCTGTGTAGTTG-C-------AGTTG-CTCC-TGTGTTGTTGT------------------TGCTGCT---GTGTTGTTGCTGT-TGC-------G----------C------------------------------------------TGTTGCTGCTGTT----TTGTTGCTGTTGCGGCTA-TGTTGTTGCCGCTATTGCT------GT---------------TGCTGCTGTGCTG---TTGC------TGC---TGTGTTGTTGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGCTT----T-TTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTTTC-GTCTCT
droRho1 scf7180000779333:1011629-1011832 + GC------------------------------------------------------------------TGTT-----------------------------------------------------------GC---------------------TGCTGCT---GTATTGTTGCTGT-TGCTGCTGTG--------------C---------------------------------------------------------------------------------------------------------T------G---CTGCTGCT--GCTG---CTGC------TGC---TGTGT---TGTTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGCTT----T-CCAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTCT
droFic1 scf7180000454050:1201493-1201763 + TCGATGGGATTT-----------------TGGTAG---GACACCCGAAACG-----------GAAAGCTGATGTTGCTGT-------------------------------------TG-CTCC-CGTGTTGTTGTTGCTGTTGCTGCTGCTGC---TGCT---G--C----------TGCTTCTGTG--------------TTGC------------------------------------------------------------------------------------------T------GC---------------TG---CT--GCTG---TTGCTGTTGCTGC-----TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CGGC------------GAGTTCGATTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTTTC-GTCTCT
droKik1 scf7180000302670:13035-13254 + TTGCAGCAAGTC--------------GT-TTGGAA---AGCCACCGT---TGGATGCAT---AAATGCCG-----------------------------------------------------G-ACTGTTGC---------------------TTCTGCT---G--T--------------------TGTTG------CTGCTGCTGCTGTTGCCTAGGATGATGCGATGGCTGCTGCTGCTGCTGATGA-------------------------------------------------------------------------------CTA---TTGC------TGT----AAGT---TGGTGAT---------------ATGG---AGC---------------------------CTAGGCCCAGGTTG--------------------------------------------------------------GG--CAGCTGGTTTAGGTGCTGCTGC--T---GTTGCA--T---------------------------------------------------------TTGCATAGC---TTGC------------------TGCTGC-TGCTGT
droAna3 scaffold_13335:948819-949080 - TG-----------------------------TTAG---GACTCTGGTACA------------AAAA-TTG------C-----------------------------CAGTTTGGTGTTG-CTTC-TGTGTTGT---------------------TGGAGCT---C--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTGGTGCTCATCGC-CGCCGGTGTAGCTCTCTACTCAGTGGGCTGTCAGTTCAGTTCGGTTCGGTTCAGTTCGCTTTCTGTTTGGTTTTCAGTTTGGGTTTTTGGTTCCGTTTCCATTTCCAGAGCAG-AGTCTCGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGCTTCTCGGGCTACTACTC---------GTCGT-GTCTCT
droBip1 scf7180000395553:7718-7941 + GCTGTGGTGTGG--------------CT-TGATGT---TGCTGTTGCAG------GGCC---TGATGTTGCTGTTGCT-----------------------------------------------------------------------------GCTGCTGCTG--TTGCTT----T----------TGTTGGAGAAGTTGCTGCTGTTGTTGCTTATGTTGTTGTGATTGCTGCTGTTGTTGTTGTTGTTGTTGTGGGTGGTGCTGTTGCGGCTGCTGTGCCTGCTGCTGTTGCTGTGCC------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCTGT--T------------------------------------------------------------------GCTGTG-------------CCTGCTGCTGTTGC----TGTTGC-TGCTGC
dp5 3:11298477-11298712 - GTGATGGTGCACATTCGTAGGCTTCGGC-TGTGGT-TGAGGTTTCGCTGTC-----------TGCTGCTGCTGTTGTT-------------------------------------GCTG-CTGC------T---------------------------------G--TTGTTG----C----------TGCTGCTGTTGTTGCTGCTGCTGT---------------------------------------------------------------------------------------------------------------TGTT--GC------TGC------TGC-----TGCTGTTGCTGCTGATGTTTA-TGT-TGCTG---------------------------------------------CTGCTGTTGTTGCTG--------------------------TTGAT----------------------------------GTTTATGTTGC--TGCTGCTGTTGTTGCTGTTGCTGCTTCTGC------------------------------------TGCAGTT-------------GCTGCTGCTGCT-------GC--T-GATGCT
droPer2 scaffold_2:5826771-5826948 + GC------------------------------------------------------------------TGTT---GCTGTT--------------------GCT-----------GC----------TGTTGC---------------------TGCTGTT---G--C--------------------TGTTG------TTGCT------------------------------------------------------------------------------------------------GCTGTTGCT------G---CTGCTGCT--GT------TTC------TGC-----TGCTGTTGCTGCTGCTGCTTC-TGC-TGGCG---------------------------------------------TTGCTTCATTTGCAT--------------------------TTGCATT----T-TATCAGCAC-----------------------------------------------------------------------------TTGTCGACGTCACATTTGTTGCAGTG-------------GCAGTGGCTGTG------GCTGTT-G-CTGC
droWil2 scf2_1100000004768:2293038-2293240 + AC---------------------------------------TTGCGCAACT-----------GCA--------------------------------------------------ATTG-ACCCTGCTCTTGA---------------------TGCTGAT---G--T--------------------TGTT---------GCT------------------------------------------------------------------------------------------------GA------TGCTGCTGCTGTTGGTGCT--GT------TGC------TGA-----TGA---TGACTGGACTCATCATCGCTCGGCTC---TTCCCT-----TAGG------------GGCAATGAGTCAATTTGCTTGGCCGTGGT--------------------------TACTTTT----TTATTGC---------------------GCTGCCAG-GTGAA---AACGCG--T---------------------------------------------------------GCCATTTG----TAGG------------------AATTTC-TTACGT
droVir3 scaffold_12970:4854352-4854562 - TTATTG-------------------------GTTG---AGCTGTTGCTGTT-----------G----------CTACTGCT---ACTGCTACC----------------------GC----------TGCTAC---------------------TGCTACC---G--C----------TGCTACTG-------------CCACTGCT------------------------------------------------------------------------------------------------GC---T------G---CTGCTCTT--GC------TGC---TATTGC-----TGC---TGCTGCTGCTGCTCT-TGC-CGCCAT---TGCTAT-----TGCT-----------------------------------------------------------------------------------------------------GT--TGCTTTTGCTGC--TGCTGTCATTGTTGCTGCTGCCGCTCTTGT------------------------------------TGCTGCT-------------GCTGCTGCTCTTGT----TGTTGC-TGCTGC
droMoj3 scaffold_6540:28253530-28253733 - GG-------------------------------------ACTATTGTGCAT----GGCAGCATTTTGCTGGAGTTGCT-------------------------------------GCTG-ATTCTGTTGTTGC---------------------TTCTGCT---G--T--------------------TGCT---------GCT------------------------------------------------------------------------------------------------GC------GGCTGTGGTTGTTGTTGTT--GT------TGC------TGCTGC--TGT---GGTTGTAGTTGCT--GCGT-CGGCAC---GGTAGC-----CAGC------------GTG-------------------------------------------------------------------------GTGGC--CGATCGTATGAGCATAGGCGGT--G---CTTGTGCCT---------------------------------------------------------GTGGCTGTG---GCTG----------T-------GGCTGG-GACTGT
droGri2 scaffold_15252:15393240-15393448 + TCGCT------T--------------GT-TGGTGG---CGCCGGCG------------------------ATGTTACTGCT--------------------GAT-----------GCTGGCTGC-GATGTTGC---------------------TGCTGAT---G--T--------------------TGTTG------TTGTG------------------------------------------------------------------------------------------------GCTGTTGCT------G---CTGATGTT--GT------TGA------TGC-----TGTTGTTGCTGCTGTCGCC----TC-GGGCG------CT-----------------------------GCATCATTTTGTTGTAA--------------------------------TGCGACT----A-ATGAG------GC--GGCAAAATTGACG---TGATGC--T---GCCGCG--T---------------------------------------------------------GAAGCCAAA---CAGC------------------G-ATGC-ATCTTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TCGATGGGATTT--------------AT-TGGTAG---GACTCCCGTAAAT-----------GAAAGCTGAT-------------------------------------------GCTG-CTCC-CGTGTTGC---------------------TGCTGCG---G--T--------------------TGTTG------CTGCT------------------------------------------------------------------------------------------------GCTGCTGCT------G---CTGCTGCT--GCTG---CTGC------TGC-----TGT---TGTTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGC--G---ATCGCG--T---------------------------------------------------------GCGGCT.........................................1812.00220000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTGCTGC--G---ATCGCG--.........................................................................................................2012.00210000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---ATCGCG--.........................................................................................................2412.00200000000002000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-AGT--CGACCAGTTGAGCA...............................................................................................................................2111.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................GC------TGC-----TGT---TGTTGCTG................................................................................................................................................................................................................................................................................16200.10200000000002000000
....................................................................................................................................................................G--T--------------------TGTTG------CTGCT------------------------------------------------------------------------------------------------GCTG................................................................................................................................................................................................................................................................................................................................................16200.05100000000001000000
................................................................................................................................................................................................................................................................................................................................................CTGC------TGC-----TGT---TGTTGCTG................................................................................................................................................................................................................................................................................18200.05100000000001000000
...........................................................................................................................................................................................................................................................................................................................................TG---CTGC------TGC-----TGT---TGTTGCTGC...............................................................................................................................................................................................................................................................................21200.05100000000001000000
............................................................................................................................................................................................................................................................................................................................................G---CTGC------TGC-----TGT---TGTTGCTGC...............................................................................................................................................................................................................................................................................20200.05100000000001000000
droSec2
GT-------------------------------TG---GGCTGTTGTTGTT-----------GGCCGCTGGA-------------------------------------------GCTG-TTCC-CCTGCTGC---------------------TGCTGCT---G--C--------------------TGTTG------CTGTT------------------------------------------------------------------------------------------------GC------TGCTGCTG---TTGTTGCG--ACAT---CTGG------TGCTGC--TGT---TGCTGCTGCTGCT--GGGG-CAGCAG---GGCGGT-----CATT------------GAG--------------------------------------------------------------------------------------------------AGGC--CGCCGTTGCTCCCGCCGCTGCTGCTCCCGTTGGCTGCAAATGTGGAGAGGTTAAGGCCACAGATGCCG--GAG-------------GCACTTGTGATGGCTGTAGGTC---------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TCGATGGGATTT--------------AT-TGGTAG---GACTCCCGTAAAT-----------GAAAGCTGAT-------------------------------------------GCTG-CTCC-CGTGTTGC---------------------TGCTGTT---G--C--------------------GGTTG------CTGCT------------------------------------------------------------------------------------------------GC--------------------------------------------TGC-----TGC---TGTTGTTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------.............2817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000007
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---ATCGCG--.........................................................................................................2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000100000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGC--G---ATCGCG--T---------------------------------------------------------GCGGC..........................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTGCTGC--G---ATCGCG--.........................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000120000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTC.........2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGC---TCGG------------------GGTCTC-GTC...1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---AT...............................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
.........................................TCCCGTAAAT-----------GAAAGCTGAT-------------------------------------------GCTG-C.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000100000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---A................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------G..............................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---ATC..............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGC---TCGG------------------GGTCTC-GTCTG.2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---ATCGC............................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGAGCAG-AGT--CGACCAGTTGAGCT...............................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGAGCTTTTGCTGC--G---A................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................ATCGC-CGGCGG---AGCTCT-----CA..............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----TTTTAGAGCAG-AGT--CGACCAGT.....................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GG...........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGG...........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CGC-CGGCGG---AGCTCT-----CAGC------------GAG.............................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTGCTGC--G---ATCG.............................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......GATTT--------------AT-TGGTAG---GACTCCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------G..............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTGGC---TCGG------------------GGTCTC-GTCTG.2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------GAGTTCGGTTCGGTTTGGCTCGTT........................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---...................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---...................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCG............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGG...........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AGT--CGACCAGTTGAGCTT..............................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------.............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGC..........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGAGCAG-AGT--CGACCAGTTGAGCT...............................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCG--T---------------------------------------------------------GCGGCTGGC---TC.................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---...................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GT....2211.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-AGT--CGACCAGTTGA..................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCG................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGC---TCGG------------------GGTCTC-GTCTG.1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................CGC-CGGCGG---AGCTCT-----CAGC------------GA..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---ATCG.............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-AGT--CGACCAGTTGAGCTTT.............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................T-----CAGC------------GAGTTCGGTTCGGTTTGGCTCG..........................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCTCGTTTGGGT--------------------------TCC......................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGC..........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.........................................................................................................................................................................................................................................................................................................................................................................................................CT-----CAGC------------GAGTTCGGTTCGG...................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGT--------------------------TCCGTTT----TTTTAGAGCAG-AGT--C............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................CGC-CGGCGG---AGCTCT-----CAGC------------GC..............................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................C-CGGCGG---AGCTCT-----CAGC------------GAGTTCGG........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGCTGGC---TCGG------------------GGTCTC-GTCTG.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---.................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGC..........................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG-AGT--CGACCAGTTGAGCTTT.............................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................TTGCTGCTCATCGC-CGGCGG---A..........................................................................................................................................................................................................................................................2111.0010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........T--------------AT-TGGTAG---GACTCCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-G.....2111.0010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCG............................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------G..............................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGT..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTC.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GC.............................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---...................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-AGT--CGACCAGTTGAGCTTTTGCTGC--.....................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGG.......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................T------------------------------------------------------------------------------------------------GC--------------------------------------------TGC-----TGC---TGTTGTTGC...............................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTCGGTTCGGTTTGGCAA...........................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................CT------------------------------------------------------------------------------------------------GC--------------------------------------------TGC-----TGC---TGTTGTTG................................................................................................................................................................................................................................................................................18200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000
droEre2
TCGATGGGATTT--------------AT-TGGTAG---GACTCCCGTAAAT-----------GAAAGCTGAT-------------------------------------------GCTG-CTCC-CGTGTTGC---------------------TGTTGCT---G--C--------------------TGTTG------CTGCT------------------------------------------------------------------------------------------------GCTGTTGCT------G---CTGT--------------TGCTGCCGCTGT-----TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----T-TTGGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCTG------------------GGTCTC-GTCTGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTGAGCTTTTGCTGC--G---ATCGC............................................................................................................2312.0020000002
...........T--------------AT-TGGTAG---GACTCCCGTAAAT-----------GAAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------...............................................1911.0011000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGC---TCTG------------------GGTCTC-GTC...1911.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCG--T---------------------------------------------------------GCGGCTGGC---TCTG------------------GGT..........2111.0010000010
droYak3
GCAATGGGATTTATTGCTAGGATTT-AT-TGGTAG---GACTCTCGTAAAT-----------GAAAGCTGATGCTGATGC-------------------------------------GG-C------TGTTGC------TGTTGCTGCTGCTGC---GGCT---G--C----------TGCGACTG-------------------------T------------------------------------------------------------------------------------T------GC---T------G---CTGCTGTT--GCTGTTGCTGC------TGC-----TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CGGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTGGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTCGGTCTGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGC..........................................2611.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTC.........2111.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGGGT--------------------------TCCGTTT----TTTTGGAGCAG-AG................................................................................................................................................2811.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTGC--G---ATCGCG--T---------------------------------------------------------G..............................................1811.00101000000000
...............................................................................................................................................GCTGCTGCTGC---GGCT---G--C----------TGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100100000000
droEug1
TCGATTTGATTT--------------TT-TGGTAG---GACTCCCAAAACA-----------GAAAGCTGATGTTGCTGTT----------------------------------GCTG-CTGC-CGTGTTGCTGT------------------TGCTGCT---G--C--------------------TGTTG------CTGTT------------------------------------------------------------------------------------------------GC------TGCTGCTG---TTGCTGCT--GC------TGC---TGCTGC-----TGC---TACTGCTGCTACTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT------TTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTCTSizeHit CountTotal NormTotal
No Reads
droBia1
TGGATTTGATTT---------------T-TGGTAG---GACAC-CGAGTCG-----------GAGAGCTGATGTCGCCGTT--------------------GCTGCC------GTGTGG-CTCC-CG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CGGC------------GAGTGCGG-TCGGTTTGGCTCGTCTGGGT--------------------------TCCGCTT------TTGGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTC-C-GTCTCTSizeHit CountTotal NormTotal
No Reads
droTak1
TCGATTGGATTT--------------ATTTGGTAG---GACTCCCGAAACA-----------GAAAGCTGATGTTGCTGCT--------------------GCTGCC------GTGTTG-CTCC-CGTGTTGC---------------------TGTTGCT---C--C----------------CGTG--TTG------CT------------------------------------------------------------------------------------------------------GT---------------TG---CT--GCTG---TTGC------TGT-----TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGCTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTCTSizeHit CountTotal NormTotal
No Reads
droEle1
TTGATAGGATTT-----------------TGGTAGG--GACACACGAAGCA-----------GAATGCTGGTGTTGCTGCTATTACTGTTTCTGCTGTGTAGTTG-C-------AGTTG-CTCC-TGTGTTGTTGT------------------TGCTGCT---GTGTTGTTGCTGT-TGC-------G----------C------------------------------------------TGTTGCTGCTGTT----TTGTTGCTGTTGCGGCTA-TGTTGTTGCCGCTATTGCT------GT---------------TGCTGCTGTGCTG---TTGC------TGC---TGTGTTGTTGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGCTT----T-TTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTTTC-GTCTCTSizeHit CountTotal NormTotal
No Reads
droRho1
GC------------------------------------------------------------------TGTT-----------------------------------------------------------GC---------------------TGCTGCT---GTATTGTTGCTGT-TGCTGCTGTG--------------C---------------------------------------------------------------------------------------------------------T------G---CTGCTGCT--GCTG---CTGC------TGC---TGTGT---TGTTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CAGC------------GAGTTCGGTTCGGTTTGGCTCGTTTGGGT--------------------------TCCGCTT----T-CCAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTCTC-GTCTCTSizeHit CountTotal NormTotal
No Reads
droFic1
TCGATGGGATTT-----------------TGGTAG---GACACCCGAAACG-----------GAAAGCTGATGTTGCTGT-------------------------------------TG-CTCC-CGTGTTGTTGTTGCTGTTGCTGCTGCTGC---TGCT---G--C----------TGCTTCTGTG--------------TTGC------------------------------------------------------------------------------------------T------GC---------------TG---CT--GCTG---TTGCTGTTGCTGC-----TGC---TGCTGCTGCTGCTCATCGC-CGGCGG---AGCTCT-----CGGC------------GAGTTCGATTCGGTTTGGCTCGTTTGGGT--------------------------TCCGTTT----TTTTAGAGCAG-AGT--CGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGC---TCGG------------------GGTTTC-GTCTCTSizeHit CountTotal NormTotal
No Reads
droKik1
TTGCAGCAAGTC--------------GT-TTGGAA---AGCCACCGT---TGGATGCAT---AAATGCCG-----------------------------------------------------G-ACTGTTGC---------------------TTCTGCT---G--T--------------------TGTTG------CTGCTGCTGCTGTTGCCTAGGATGATGCGATGGCTGCTGCTGCTGCTGATGA-------------------------------------------------------------------------------CTA---TTGC------TGT----AAGT---TGGTGAT---------------ATGG---AGC---------------------------CTAGGCCCAGGTTG--------------------------------------------------------------GG--CAGCTGGTTTAGGTGCTGCTGC--T---GTTGCA--T---------------------------------------------------------TTGCATAGC---TTGC------------------TGCTGC-TGCTGTSizeHit CountTotal NormTotal
No Reads
droAna3
TG-----------------------------TTAG---GACTCTGGTACA------------AAAA-TTG------C-----------------------------CAGTTTGGTGTTG-CTTC-TGTGTTGT---------------------TGGAGCT---C--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTGGTGCTCATCGC-CGCCGGTGTAGCTCTCTACTCAGTGGGCTGTCAGTTCAGTTCGGTTCGGTTCAGTTCGCTTTCTGTTTGGTTTTCAGTTTGGGTTTTTGGTTCCGTTTCCATTTCCAGAGCAG-AGTCTCGACCAGTTGAGCTTTTGCTGC--G---ATCGCG--T---------------------------------------------------------GCGGCTGGCTTCTCGGGCTACTACTC---------GTCGT-GTCTCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................GTTGT---------------------TGGAGCT---C--C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGGTG................................................................................................................................................................................................................................................................................2011.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---ATCGCG--T---------------------------------------------------------GCGGCTGGCTTCTCGGG..............................2511.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATTTCCAGAGCAG-AGTCTCGACC........................................................................................................................................2611.001100000
droBip1
GCTGTGGTGTGG--------------CT-TGATGT---TGCTGTTGCAG------GGCC---TGATGTTGCTGTTGCT-----------------------------------------------------------------------------GCTGCTGCTG--TTGCTT----T----------TGTTGGAGAAGTTGCTGCTGTTGTTGCTTATGTTGTTGTGATTGCTGCTGTTGTTGTTGTTGTTGTTGTGGGTGGTGCTGTTGCGGCTGCTGTGCCTGCTGCTGTTGCTGTGCC------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCTGT--T------------------------------------------------------------------GCTGTG-------------CCTGCTGCTGTTGC----TGTTGC-TGCTGCSizeHit CountTotal NormTotal
No Reads
dp5
GTGATGGTGCACATTCGTAGGCTTCGGC-TGTGGT-TGAGGTTTCGCTGTC-----------TGCTGCTGCTGTTGTT-------------------------------------GCTG-CTGC------T---------------------------------G--TTGTTG----C----------TGCTGCTGTTGTTGCTGCTGCTGT---------------------------------------------------------------------------------------------------------------TGTT--GC------TGC------TGC-----TGCTGTTGCTGCTGATGTTTA-TGT-TGCTG---------------------------------------------CTGCTGTTGTTGCTG--------------------------TTGAT----------------------------------GTTTATGTTGC--TGCTGCTGTTGTTGCTGTTGCTGCTTCTGC------------------------------------TGCAGTT-------------GCTGCTGCTGCT-------GC--T-GATGCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------GTTTATGTTGC--TGCTGCTG.............................................................................................................2040.2510100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------------------------------GTTTATGTTGC--TGCTGCT..............................................................................................................1940.2510100000000
.................................................................................................................................................................................................................................................................................................................................................................................TGTTTA-TGT-TGCTG---------------------------------------------CTGCTG............................................................................................................................................................................................................2040.2510100000000
.................................................................................................................................................................................................................................................................................................................................................................................TGTTTA-TGT-TGCTG---------------------------------------------CTGCT.............................................................................................................................................................................................................1940.2510100000000
droPer2
GC------------------------------------------------------------------TGTT---GCTGTT--------------------GCT-----------GC----------TGTTGC---------------------TGCTGTT---G--C--------------------TGTTG------TTGCT------------------------------------------------------------------------------------------------GCTGTTGCT------G---CTGCTGCT--GT------TTC------TGC-----TGCTGTTGCTGCTGCTGCTTC-TGC-TGGCG---------------------------------------------TTGCTTCATTTGCAT--------------------------TTGCATT----T-TATCAGCAC-----------------------------------------------------------------------------TTGTCGACGTCACATTTGTTGCAGTG-------------GCAGTGGCTGTG------GCTGTT-G-CTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................TGC---------------------TGCTGTT---G--C--------------------TGTTG------TT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051010000
droWil2
AC---------------------------------------TTGCGCAACT-----------GCA--------------------------------------------------ATTG-ACCCTGCTCTTGA---------------------TGCTGAT---G--T--------------------TGTT---------GCT------------------------------------------------------------------------------------------------GA------TGCTGCTGCTGTTGGTGCT--GT------TGC------TGA-----TGA---TGACTGGACTCATCATCGCTCGGCTC---TTCCCT-----TAGG------------GGCAATGAGTCAATTTGCTTGGCCGTGGT--------------------------TACTTTT----TTATTGC---------------------GCTGCCAG-GTGAA---AACGCG--T---------------------------------------------------------GCCATTTG----TAGG------------------AATTTC-TTACGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--T---------------------------------------------------------GCCATTTG----TAGG------------------AATTTC-TTACG.2611.00100001
...................................................................................................................................................................................................................................................................................................................................................................................ATCATCGCTCGGCTC---TTCCCT-----................................................................................................................................................................................................................................................2111.00101000
..................................................................................................................................................................................................................................................................................................................................GTGCT--GT------TGC------TGA-----TGA---TGACTGT.................................................................................................................................................................................................................................................................................2311.00100001
...........................................................................................................................................................................................................................................................................................................................................................................CTGGACTCATCATCGCTCGGC................................................................................................................................................................................................................................................................2111.00101000
..............................................................................................................................................................................................................................................................................................................................................................................GACTCATCATCGCTCGGCTC---T..........................................................................................................................................................................................................................................................2111.00110000
..........................................................................................................................................................................................................................................................................................................................................................................................CTCGGCTC---TTCCCT-----TAGG------------GGC.............................................................................................................................................................................................................................2111.00110000
...........................................................................................................................CTGCTCTTGA---------------------TGCTGAT---G--T--------------------TG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................GT------TGC------TGA-----TGA---TGACTGGAC...............................................................................................................................................................................................................................................................................2011.00110000
................................................................................................................................................................................................................................................................................................................................................................................CTCATCATCGCTCGGCTC---TTC........................................................................................................................................................................................................................................................2111.00100001
.............................................GCAACT-----------GCA--------------------------------------------------ATTG-ACCCTGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
.................................................CT-----------GCA--------------------------------------------------ATTG-ACCCTGCTCTTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..................................................................................................................................TGA---------------------TGCTGAT---G--T--------------------TGTT---------GCT------------------------------------------------------------------------------------------------GA------............................................................................................................................................................................................................................................................................................................................................2111.00101000
..............................................................................................................................CTCTTGA---------------------TGCTGAT---G--T--------------------TGTT---------G......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100001
..................................................................................................................................................................................................................................................................................................................................GTGCT--GT------TGC------TGA-----TGA---TGACT...................................................................................................................................................................................................................................................................................2111.00101000
....................................................................................................................................................................................................................................................................................................................TGCTGCTGCTGTTGGTGCT--GT------TG.............................................................................................................................................................................................................................................................................................................2360.83505000
....................................................................................................................................................................................................................................................................................................................TGCTGCTGCTGTTGGTGCT--GT------TGC------......................................................................................................................................................................................................................................................................................................2450.20110000
.......................................................................................................................................................................................................................................................................................................................TGCTGCTGTTGGTGCT--GT------TG.............................................................................................................................................................................................................................................................................................................2080.13101000
....................................................................................................................................................................................................................................................................................................................TGCTGCTGCTGTTGGTGC..........................................................................................................................................................................................................................................................................................................................18200.05101000
....................................................................................................................................................................................................................................................................................................................TGCTGCTGCTGTTGGTGCT--G......................................................................................................................................................................................................................................................................................................................20200.05100010
droVir3
TTATTG-------------------------GTTG---AGCTGTTGCTGTT-----------G----------CTACTGCT---ACTGCTACC----------------------GC----------TGCTAC---------------------TGCTACC---G--C----------TGCTACTG-------------CCACTGCT------------------------------------------------------------------------------------------------GC---T------G---CTGCTCTT--GC------TGC---TATTGC-----TGC---TGCTGCTGCTGCTCT-TGC-CGCCAT---TGCTAT-----TGCT-----------------------------------------------------------------------------------------------------GT--TGCTTTTGCTGC--TGCTGTCATTGTTGCTGCTGCCGCTCTTGT------------------------------------TGCTGCT-------------GCTGCTGCTCTTGT----TGTTGC-TGCTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTTGT------------------------------------TGCTGCT-------------GCTGCTGCT......................2450.201000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................T-----TGCT-----------------------------------------------------------------------------------------------------GT--TGCTTTTGCTGC--TG...................................................................................................................2160.171000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGT------------------------------------TGCTGCT-------------GCTGCTGCTC.....................21200.153300000000000000000000000000000000000000000000000000000000000000
droMoj3
GG-------------------------------------ACTATTGTGCAT----GGCAGCATTTTGCTGGAGTTGCT-------------------------------------GCTG-ATTCTGTTGTTGC---------------------TTCTGCT---G--T--------------------TGCT---------GCT------------------------------------------------------------------------------------------------GC------GGCTGTGGTTGTTGTTGTT--GT------TGC------TGCTGC--TGT---GGTTGTAGTTGCT--GCGT-CGGCAC---GGTAGC-----CAGC------------GTG-------------------------------------------------------------------------GTGGC--CGATCGTATGAGCATAGGCGGT--G---CTTGTGCCT---------------------------------------------------------GTGGCTGTG---GCTG----------T-------GGCTGG-GACTGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................TGCT-------------------------------------GCTG-ATTCTGTTGTTGC---------------------T.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000001
droGri2
TCGCT------T--------------GT-TGGTGG---CGCCGGCG------------------------ATGTTACTGCT--------------------GAT-----------GCTGGCTGC-GATGTTGC---------------------TGCTGAT---G--T--------------------TGTTG------TTGTG------------------------------------------------------------------------------------------------GCTGTTGCT------G---CTGATGTT--GT------TGA------TGC-----TGTTGTTGCTGCTGTCGCC----TC-GGGCG------CT-----------------------------GCATCATTTTGTTGTAA--------------------------------TGCGACT----A-ATGAG------GC--GGCAAAATTGACG---TGATGC--T---GCCGCG--T---------------------------------------------------------GAAGCCAAA---CAGC------------------G-ATGC-ATCTTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:15 AM