ID:

dsi_9873

 Coordinate:

3r:13522678-13522827 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-2.6 -2.57 -2.4

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

AATATAAAAGTAATTTTTATTACAGTTTATAGTTTTGTACGTGTATATGCCAATTGCTTGGAAATAGTTTACCTGCGTACAGTTAATTATTTCAAAAAATACTGAAACATATATTTAATTAAGACCCAACACTCCTCTACACTGACATCCACACACACTAAGGCCAACTACACTGGGCAAAAATCGAACACACTCTTGACATTGCAAGTTGCTCAACATGTTTTGATGGGCGTAAATGAAAGAATAACAT
***************************************************************************************************...............................................................(((..........))).................******************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902009
testis
 M023
head
 O001
Testis
.......................................................................................................................................................................................TCGAACACACTCTTGACATTGCAAGT......................................... 26 0 1 20.00 20 12 0 0 4 0 4 0 0 0 0 0 0 0
......................................................................................................................................................................................ATCGAACACACTCTTGACATTGCAAGT......................................... 27 0 1 6.00 6 5 0 0 1 0 0 0 0 0 0 0 0 0
.............................................TATGCCAATTGCTTGGAAATAGA...................................................................................................................................................................................... 23 1 1 5.00 5 2 0 0 2 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................TGTTTTGATGGGCGTAAATGAAAGAA...... 26 0 1 5.00 5 0 2 0 0 0 3 0 0 0 0 0 0 0
.............................................TATGCCAATTGCTTGGAAATAG....................................................................................................................................................................................... 22 0 1 4.00 4 0 2 0 0 0 0 1 1 0 0 0 0 0
........................................................................................................................................................................TACACTGGGCAAAAATCGAACACACTC....................................................... 27 0 1 4.00 4 3 0 0 0 0 1 0 0 0 0 0 0 0
....................TACAGTTTATAGTTTTGTACGTGTA............................................................................................................................................................................................................. 25 0 1 4.00 4 0 1 0 1 0 0 2 0 0 0 0 0 0
.........................................................................................................................................................................ACACTGGGCAAAAATC................................................................. 16 0 2 3.50 7 0 7 0 0 0 0 0 0 0 0 0 0 0
.............................................TATGCCAATTGCTTGGAAATAGTT..................................................................................................................................................................................... 24 0 1 3.00 3 0 2 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................TCGAACACACTCTTGACATTGCAAGTTGC...................................... 29 0 1 3.00 3 0 0 0 1 0 0 0 0 0 0 2 0 0
.................................TTTGTACGTGTATATGCC....................................................................................................................................................................................................... 18 0 1 3.00 3 0 0 0 0 3 0 0 0 0 0 0 0 0
.................TATTACAGTTTATAGTTTTGTACGTGTA............................................................................................................................................................................................................. 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TACACTGGGCAAAAATCGAACACACTCT...................................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AAAATCGAACACACTCTTGACATT............................................... 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0 0
...................TTACAGTTTATAGTTTTGTACGTGTA............................................................................................................................................................................................................. 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................TACTGAAACATATATTTAATTAAGA.............................................................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGACATCCACACTCATTAA......................................................................................... 19 2 1 2.00 2 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................TGGGCGTAAATGAAAGAATAACA. 23 0 1 2.00 2 0 0 0 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................TGGGCAAAAATCGAACACACTCTTGACA................................................. 28 0 1 2.00 2 0 0 0 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTGATGGGCGTAAATGAAAGAATAA... 25 0 1 2.00 2 0 1 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................AATCGAACACACTCTTGACATTGCAAGT......................................... 28 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................TCTACACTGACATCCACACACACTAAGGC...................................................................................... 29 0 1 2.00 2 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTGATGGGCGTAAATGAAAGGATAACA. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TCGAACACACTCTTGACATTGCAAGTT........................................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................AAAATCGAACACACTCTTGACA................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................AAGACCCAACACTCCTCTACACT........................................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................TAAGACCCAACACTCCTCTACACTGACA....................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................ACTACACTGGGCAAAAATCGAACACAC......................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GAACACACTCTTGACATT............................................... 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGTTTTGATGGGCGTAAATGAAAGAATA.... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CTACACTGGGCAAAAATCGAACACACTC....................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................TAAGACCCAACACTCCTCTACACT........................................................................................................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.................................TTTGTACGTGTATATGCCAATTGCTTGGA............................................................................................................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TACACTGGGCAAAAATCGAACACACT........................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TTTGATGGGCGTAAATGAAAGAAT..... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................AACATATATTTAATTAAGACCCAAC........................................................................................................................ 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.........................................TGTATATGCCAATTGCTTGGAAATAGTT..................................................................................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................CTTGACATTGCAAGT......................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TACACTGACATCCACACACACTAAGGC...................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................................................................CATGTTTTGATGGGCGTAAATGAAAGA....... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGATGGGCGTAAATGAAAGAATAACAT 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
............................ATAGTTTTGTACGTGTATATGCCA...................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...................................................AATTGCTTGGAAATAGTTTACCTGC.............................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................ACACACTCTTGACATTGCCAGT......................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................TTAAGACCCAACACTCCTCTACACTGACA....................................................................................................... 29 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................TGGGCAAAAATCGAACACACTCTTGACAT................................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTGATGGGCGTAAATGAAAGAATAAC.. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTGATGGGCGTAAATGAAAGAATAACAT 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................CTACACTGACATCCACACACAC............................................................................................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................CAACTACACTGGGCAAAAATCGAACACA.......................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGCAAGTTGCTCAACATGTT............................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................................TGCTTGGAAATAGTTTACCTGCGTAC.......................................................................................................................................................................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGTTTTGATGGGCGTAAATGAAATAA...... 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AAATCGAACACACTCTTGAC.................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TGATGGGCGTAAATGAAAGAATAACA. 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................CAACATGTTTTGATGGGCGT................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................TGGGCAAAAATCGAACACACTCTT..................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................TCTTGACATTGCAAGTTGCTCAACATGT............................. 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................GACCCAACACTCCTCTACACTGACATCC.................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TTTTGATGGGCGTAAATGAAAGAATA.... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................ACCCAACACTCCTCTACACTG.......................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................AGGCCAACTACACTGGGCAAAAATCGA............................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................AACTACACTGGGCAAAAATCG................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................AACATATATTTAATTAAGACCCAACACT..................................................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................TAAACTGACATCCACACACACTAAGGC...................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
......................................................TGCTTGGAAATAGTTTACCTGCGTACAGT....................................................................................................................................................................... 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................CTACACTGGGCAAAAATCGAAA............................................................. 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0 0
.............................................TATGCCGATTGCTTGGAAATAG....................................................................................................................................................................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................CCACACAAACTAAGGCCAA................................................................................... 19 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................CACTCCTCTACACTGACATCCACACACA............................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............TTTATTACAGTTTATAGTTTTGTACGTGTA............................................................................................................................................................................................................. 30 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................ACTGACATCCACACACACTAAGGC...................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................GACATCCACACACACTAAGGC...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TGTTTTGATGGGCGTAAATGAA.......... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TGACATCCACACACACTA.......................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................CAAAAATCGAACACACTCTTGACATTGC............................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................TTTAATTAAGACCCAACACTCCTCTACAC............................................................................................................ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................ATGTTTTGATGGGCGTAAATGAAAGAA...... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................AAGGCCAACTACACTGGG......................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
.............................................TATGCCAATTGCTTGGAAATA........................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................TGACATTGCAAGTTGCTCAACATGT............................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................TTGATGGGCGTAAATGAAAGAATAACA. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................TACACTGGGCAAAAATC................................................................. 17 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................GCTTGGAAACAGGTTACCTGG.............................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0
........................................................................................................................................................................TACACTGGGTAAAAATC................................................................. 17 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................AGTTAATTATTACAAAA......................................................................................................................................................... 17 1 13 0.15 2 0 0 0 0 0 0 0 0 0 2 0 0 0
............................................................................................................CTATATGGAATTAAGACC............................................................................................................................ 18 3 20 0.15 3 0 0 0 0 3 0 0 0 0 0 0 0 0
..............................................................................................................................................TGACATCCACACTCATTAAA........................................................................................ 20 3 16 0.13 2 0 0 1 0 0 0 0 0 0 1 0 0 0
...............................GTTTTGTACGTGTTTGAGC........................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................CTATATTGAAGTAAGACC............................................................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0 0
...................................................................................................................................................TCCAGACACAGTAAGG....................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTATATTTTCATTAAAAATAATGTCAAATATCAAAACATGCACATATACGGTTAACGAACCTTTATCAAATGGACGCATGTCAATTAATAAAGTTTTTTATGACTTTGTATATAAATTAATTCTGGGTTGTGAGGAGATGTGACTGTAGGTGTGTGTGATTCCGGTTGATGTGACCCGTTTTTAGCTTGTGTGAGAACTGTAACGTTCAACGAGTTGTACAAAACTACCCGCATTTACTTTCTTATTGTA
*******************************************************...............................................................(((..........))).................*************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
......................................................................................................................................GAGGTGTGACTGAAGCTGTGT............................................................................................... 21 3 1 1.00 1 0 1 0 0
................................................................................................................................................................TCCGGTTGTTGTGACCCGTG...................................................................... 20 2 2 0.50 1 1 0 0 0
................................................................................................................................................................TCCGGTTGTTGTGACCTGT....................................................................... 19 2 3 0.33 1 1 0 0 0
.........................................................................................................................................................................TGTGACCCGTTTTTAGTT............................................................... 18 1 6 0.17 1 1 0 0 0
...............................................................................................................AAAAATTAATGCTGGGTTG........................................................................................................................ 19 2 7 0.14 1 0 0 1 0
.........................................................................................................................................................................TGTGACCCGTCTTTAG................................................................. 16 1 12 0.08 1 1 0 0 0
..................................................................................................................................................................................................................CGAGTTGTACAAAAGAAC...................... 18 2 13 0.08 1 0 0 0 1
...................................................................................................................................................................GGTTGATGTGATGCGT....................................................................... 16 2 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:13522628-13522877 + dsi_9873 AATATAAAA----GTAATT-TTTATTACAGTTTATAGTTT-TGT-ACGTGTATATGCCAATTGCTTGGA--AATAGTTTACCTGCGTACAGTTAATTATTTCAAAAAATACTGAAAC----ATATATTTAATTAAGACCC--AA-CAC--------TCCTC-TACA-----------CT----GACATCCACACA--------CACTAAGGCC-AACTACACTG-GGCAAAAATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGTTGCTCAACAT---------------GTTTTGATGGGCGTAAATGAAA-GA-A-T---------AACAT
droSec2 scaffold_0:14388058-14388306 + AATATAAAA----GTAATT-TTTGTTACAGTTTATAGTTT-TGT-ACGTGTATATGCCAATTGCTTGGA--AATAGTTTACCTGCGTACAGTTAATTATTTCAAAAAATACTGAAAC----ATATATT-AATTAAGACCC--AA-CAC--------TCCTC-TACA-----------CT----GACATCCACACA--------CACTAAGGCC-AACTACACTG-GACAAAAATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGTTGCTCAAAAT---------------GTTTTGATGGGCGTAAATGAAA-GA-A-T---------AACAT
dm3 chr3R:7577611-7577862 - AATATAAAG----GTAATTTTTTGTTACAGTTTATAGTTT-TGTAACGTGTATATGCCAATTGCTTGGA--AATAGTTTACATGCGTACAGTTAATTATTTCAAAAAATACTGAAAC----ATATATTTAATTAAGCCCC--AA-CAC--------TTCTC-TACA-----------CT----GACATCCATACA--------CACTAAGGCC-AGCTACACTG-GGCAAAAATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGTTGCTCAACAC---------------GTTTTGATGGGCGTAAATGAAA-TA-A-T---------AACAC
droEre2 scaffold_4770:14039197-14039425 + AATATAA----------------------------AGTTT-TGT-ACGTGTATATGCCAATTACTTGGA--AATAGTTTACCCGTGTACAGTTAATTATTTCAAAAACTATTAAAAC----ATATATTTAATTAAGCCCC--AA-CAC--------TCATA-TACA-----------CT----GACACCCACACA------CACACTAAGGCC-AACTACACTG-GGCAAAAATCT------------------AAC-AA----ACCCTTGACATT-----GCAAGTTGCTCAACAT---------------TTTTTGATGGGCGTAAATGAAA-GA-A-T---------AACAT
droYak3 3R:16840879-16841130 + AATATAAAT----TAAATT-TTGTTTACAGCTTACAGTTT-TGT-AAGCGTATATGCCAATTACTTGGA--AATAGTTTACCTGTGTTCAGTTAATTATTTCAAAAACTATTGAAAC----ATATATT-AATTAAGCCCC--AAACAC--------TCCTC-TACA-----------CT----GACACCCACACA------CACACTAAGGCC-AACTACACTG-GGCCAAAATCT------------------AAC-GA----ACTCTTGACATT-----GCAAGTTGCTCAACAT---------------TTTTTGATGGGCGTAAATGAAA-GC-A-T---------AGCAT
droEug1 scf7180000409797:1219961-1220175 - TATTTCA--------------------------------------------ATATGCAAATTTTTTGGA--AATCGCTTGCCCGTGGACAGTTATTTCTTTCCAAAACTGTTGAAAGATGCATATATTTTTTTAAGTCCC-CGAAAAA--------T--CC-AACA-----------TT----AACAACCATATA--------CACACATACA-C---ACACTGTGGCAAAAAGCT------------------AGC-AA----ACTCTTGACATT-----GCAAGTTGCTCAACAT---------------TTTTTGCTGGGCGTAAATGAAA-GG-A-A---------AACAT
droBia1 scf7180000302113:3446918-3447105 - AACTTGA------------------------------------------GTATCTGTCAGTTCCTTGGA--TGAAACTTGCCCGCTGACAGTTATTTCTTTTCGAAACTGTTGAAAG----ATATATTTTTTTAAGCCCC-CGAGAAC--------TCCTC-CACA-----------CT----AACACCCACACT--------AAC-------------------------------------------------AC-AA----ACTCTTGACATT-----GCTAGTTGCTCAACAT---------------TTTTTGCTGGGCGTAAATGAAG-GG-A-A---------AGCAT
droTak1 scf7180000410579:83810-84022 + TATCGCA--------------------------------------------------CATTTCCTTGGA--AAAA-CTTGCCCGTCGAAAGTTATTTCTTTCCAAAATCGTTGAAAG----ATATATTTTTTTAAGCCCCCCGAAAAT--------TCCTC-TACA-----------CT---TAACACCCACG-----ACACACACTATGGCC-AACTACACTG-GGCAAAAAGCT------------------AAC-AA----ACTCTTGACATT-----GCAAGTTGCTCAACCT---------------TTTTTGCTGGGCGTAAATGAAA-GG-G-A---------AACAT
droEle1 scf7180000491080:2107039-2107297 + ATTTG-AAATCCTGAAAGA-TCCATTTC-GTTTATAGTTTATGT-GCGTGTACATGCCAGTTCCTTGGA--AGTGGCTTGCTTGCGTATAGTTATTTCTTTCTAAAACTGTTGAGAA----ATATATTTTTTTAAGCCCC-CGACAAT--------TCCTCCAACA-----------CT----AACACCCACTTA--------CACTATCGCC-AACTACAATG-GGCAAT--GCT------------------AAC-A-----ACGCTTGACATTGCATTGCAAGTTGCTCAACCTT--------------TTTTTGCCGGGCGTAAATGAAA-GG-A-A---------AACAT
droRho1 scf7180000779338:66124-66378 + ATTTG-AAATCCTCAAAAT-TTGATTTCA-TTTATAGTTTATTT-GCGTGTACATGCCAACTCCTTAGATAGATGGCTTGCTCATGGATAGTTATTTCTTTCTAAAACTGTTGAAAAA---ATATATTTTTTTAAGGCCC-CGACAAC--------TCCTA-AACA-----------CT----AACACGCACTTA--------CACTATCGCC-AAATACATTG-GGA--AAATCT------------------AAC-AA----ACTCTTGACATT-----GCAAGTTGCTCAACAT----------------TTTTGCTGGGCGTAAATGAAA-GG-A-A---------AACAT
droFic1 scf7180000453488:244020-244269 + TATTTGAAATCAT-----------------CATAAGCTTT-TGT-GTGTGTACATGAAAACCCCTTCAA--AATGTCTTCCCCGTGGATAATTATTTCTTTCCAAAACTGTTGAAAG----ATATATTTTTTTAAGGCCA-CGAAAAC--------TCCTC-TACA-----------CTATATAACACCCACACATACACAAACACTATCGCC-AACTTCACTG-GGCAAA--GCT------------------AAC-AA----ACTCTTGACATT-----GCAAGTTGCTCAACAT---------------TTTAAGCTGGGCGTAAATGACA-GC-A-T---------AACAT
droKik1 scf7180000301923:282317-282417 - T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTG-GGCGAAAAGCG--------AGGCAAAGCTAAGCAA--C-TCTCTTGACATT-----GCAAGTTGCTCAACATTT---------ATTTTTTGGAATGGGCGTAAATAAGAAGG-A-A---------AACAT
droAna3 scaffold_13340:14058703-14058896 - TCTGG----------------------------------------TTGTGCAAATTTAAATTTCTTAAA--ACTAGCCTT-------ACGGAAGA--CTATCCGAAGCTATTGAA-G----ATATATT-TTTTAAGCCCC------------------CCC-TACA-----------TT----TAATCACA------------CATTTT--CCACACTACACTG-GGCGAA--GCG------------------AAA--T----AAACTTGACATTG--TTGTTGGTTGCTCAACTA---------------CAGTAGCTGGGCGTAAATGAAT-GG-A-A---------GACAC
droBip1 scf7180000395971:1100695-1100907 + TCTGG----------------------------------------TTGTGCACACTTGGGTTTCTTAAA--ACTAGCCTT-------ACAG-----------AAACACTATTGAA-G----ATGTATC-TTTTAAGCCCC--AA-TCC--------CCCAA-TACAAGCCCTATGCATTATAC----------TA--------CACTTT--CCACACTACACTG-GGCGAA--GCT------------AAAGCTAAA--T----AAACTTGACATT-----GTTGGTGGCCCAACTA---------------CAGGGACTGGGCGTAAATGAAA-GG-C-CGACAACAACAACAA
dp5 2:25779323-25779515 + A----------------------------------------------------------------------------------------------TTCTTTCGAAAACTTTTGGAGAGT--GTATATTTTTTTAAGCCCT--GA-CAAAAGTAAAAGATTC-TACA-----------TT----GAAATGTACACC--------CACTAA--CA-CACAACACA---AAAAAACACGAGCACTATAGAGAAACCTAAG-GGTTCTGTTCTTGACATT-----TAACGATGCTGAACAA---------------TTTTTGCTGGGCGTAAATAAAG-GT-A-A---------AACAA
droPer2 scaffold_6:1144610-1144803 - A----------------------------------------------------------------------------------------------TTCTTTCGAAAACTTTTGGAGAGT--GTATATTTTTTTAAGCCCT--GA-CAAAAGAAAAAGATTC-TACA-----------TT----GAAATGTACACC--------CCCACTAACA-CACAACACA----AAAAACACGAGCACTATAGAGAAACCTAAG-GGTTCTGTTCTTGACATT-----TAACGATGCTGAACAA---------------TTTTTGCTGGGCGTAAATAAAG-GT-A-A---------AACAA
droVir3 scaffold_12855:5624061-5624130 - AAAAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-GA----ATTCTTGAC----------ACATTGCTCAACAGGT-------------TTTTTGCTGGGCGTAAATAACA-AT-ATT---------GAAAT
droMoj3 scaffold_6540:5945291-5945378 - TATACAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAGCAG------------------AGA-GA----ATTCTTGACACT----------TTGCTCAACAAGTTTTTTCTTTGTGTTTTTTGCTGGGCGTAAATGAAG----------------AACAT
droGri2 scaffold_14906:8383183-8383253 + AGAAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-AA----ATTCTTGAC----------ACATTGCTCAACAAGT-------------TTTTTGCTGGGCGTAAATAATA-AAAATT---------GAAAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AATATAAAA----GTAATT-TTTATTACAGTTTATAGTTT-TGT-ACGTGTATATGCCAATTGCTTGGA--AATAGTTTACCTGCGTACAGTTAATTATTTCAAAAAATACTGAAAC----ATATATTTAATTAAGACCC--AA-CAC--------TCCTC-TACA-----------CT----GACATCCACACA--------CACTAAGGCC-AACTACACTG-GGCAAAAATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGTTGCTCAACAT---------------GTTTTGATGGGCGTAAATGAAA-GA-A-T---------AACATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................TCG------------------AAC-AC----ACTCTTGACATT-----GCAAGT....................................................................26120.0020000000412000040000
........................................................................................................................................................................................................................................ATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGT....................................................................2716.00600000015000000000
....................................................TATGCCAATTGCTTGGA--AATAGA......................................................................................................................................................................................................................................................................................2315.00500000022100000000
........................................................................................................................................................................................................................................................................................................T---------------GTTTTGATGGGCGTAAATGAAA-GA-A-...............2615.00500000000002030000
....................................................TATGCCAATTGCTTGGA--AATAG.......................................................................................................................................................................................................................................................................................2214.00400000000012100000
.........................................................................................................................................................................................................................TACACTG-GGCAAAAATCG------------------AAC-AC----ACTC.......................................................................................2714.00400000003000010000
.........................TACAGTTTATAGTTT-TGT-ACGTGTA...............................................................................................................................................................................................................................................................................................................2514.00400000010021000000
..........................................................................................................................................................................................................................ACACTG-GGCAAAAATC........................................................................................................................1623.50700000000007000000
....................................................TATGCCAATTGCTTGGA--AATAGTT.....................................................................................................................................................................................................................................................................................2413.00300000000012000000
.........................................................................................................................................................................................................................................TCG------------------AAC-AC----ACTCTTGACATT-----GCAAGTTGC.................................................................2913.00300000010000002000
......................................TT-TGT-ACGTGTATATGCC.........................................................................................................................................................................................................................................................................................................1813.00300300000000000000
......................TATTACAGTTTATAGTTT-TGT-ACGTGTA...............................................................................................................................................................................................................................................................................................................2813.00300000003000000000
.........................................................................................................................................................................................................................TACACTG-GGCAAAAATCG------------------AAC-AC----ACTCT......................................................................................2812.00200000002000000000
.....................................................................................................................................................................................................................................AAAATCG------------------AAC-AC----ACTCTTGACATT-----..........................................................................2412.00200200000000000000
........................TTACAGTTTATAGTTT-TGT-ACGTGTA...............................................................................................................................................................................................................................................................................................................2612.00200000001001000000
............................................................................................................TACTGAAAC----ATATATTTAATTAAGA..........................................................................................................................................................................................................................2512.00200000002000000000
...............................................................................................................................................................................................................................................................................................................................TGGGCGTAAATGAAA-GA-A-T---------AACA.2312.00200000010100000000
..............................................................................................................................................................................................................................TG-GGCAAAAATCG------------------AAC-AC----ACTCTTGACA.................................................................................2812.00200000010010000000
...........................................................................................................................................................................................................................................................................................................................TTGATGGGCGTAAATGAAA-GA-A-T---------AA...2512.00200000000001010000
.......................................................................................................................................................................................................................................AATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGT....................................................................2812.00200000002000000000
...............................................................................................................................................................TC-TACA-----------CT----GACATCCACACA--------CACTAAGGC...............................................................................................................................................2912.00200000011000000000
.........................................................................................................................................................................................................................................TCG------------------AAC-AC----ACTCTTGACATT-----GCAAGTT...................................................................2711.00100000001000000000
.....................................................................................................................................................................................................................................AAAATCG------------------AAC-AC----ACTCTTGACA.................................................................................2211.00110000000000000000
.....................................................................................................................................AAGACCC--AA-CAC--------TCCTC-TACA-----------CT----............................................................................................................................................................................2311.00100100000000000000
....................................................................................................................................TAAGACCC--AA-CAC--------TCCTC-TACA-----------CT----GACA........................................................................................................................................................................2811.00100000001000000000
.......................................................................................................................................................................................................................ACTACACTG-GGCAAAAATCG------------------AAC-AC----AC.........................................................................................2711.00100000001000000000
...........................................................................................................................................................................................................................................G------------------AAC-AC----ACTCTTGACATT-----..........................................................................1811.00100100000000000000
........................................................................................................................................................................................................................................................................................................T---------------GTTTTGATGGGCGTAAATGAAA-GA-A-T---------A....2811.00100010000000000000
........................................................................................................................................................................................................................CTACACTG-GGCAAAAATCG------------------AAC-AC----ACTC.......................................................................................2811.00100000001000000000
....................................................................................................................................TAAGACCC--AA-CAC--------TCCTC-TACA-----------CT----............................................................................................................................................................................2411.00100100000000000000
......................................TT-TGT-ACGTGTATATGCCAATTGCTTGGA--............................................................................................................................................................................................................................................................................................2911.00100010000000000000
.........................................................................................................................................................................................................................TACACTG-GGCAAAAATCG------------------AAC-AC----ACT........................................................................................2611.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................TTTGATGGGCGTAAATGAAA-GA-A-T---------.....2411.00100010000000000000
..................................................................................................................AAC----ATATATTTAATTAAGACCC--AA-C.................................................................................................................................................................................................................2511.00100001000000000000
................................................TGTATATGCCAATTGCTTGGA--AATAGTT.....................................................................................................................................................................................................................................................................................2811.00100000001000000000
...........................................................................................................................................................................................................................................................................CTTGACATT-----GCAAGT....................................................................1511.00100000000001000000
..................................................................................................................................................................TACA-----------CT----GACATCCACACA--------CACTAAGGC...............................................................................................................................................2711.00100000000100000000
......................................................................................................................................................................................................................................................................................................CAT---------------GTTTTGATGGGCGTAAATGAAA-GA-.................2711.00100010000000000000
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-GA-A-T---------AACAT2711.00101000000000000000
.................................ATAGTTT-TGT-ACGTGTATATGCCA........................................................................................................................................................................................................................................................................................................2411.00100010000000000000
..........................................................AATTGCTTGGA--AATAGTTTACCTGC..............................................................................................................................................................................................................................................................................2511.00101000000000000000
...................................................................................................................................TTAAGACCC--AA-CAC--------TCCTC-TACA-----------CT----GACA........................................................................................................................................................................2911.00100000000000001000
..............................................................................................................................................................................................................................TG-GGCAAAAATCG------------------AAC-AC----ACTCTTGACAT................................................................................2911.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................TTGATGGGCGTAAATGAAA-GA-A-T---------AAC..2611.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................TTGATGGGCGTAAATGAAA-GA-A-T---------AACAT2811.00100000000001000000
................................................................................................................................................................C-TACA-----------CT----GACATCCACACA--------CAC.....................................................................................................................................................2211.00100010000000000000
....................................................................................................................................................................................................................C-AACTACACTG-GGCAAAAATCG------------------AAC-AC----A..........................................................................................2811.00100000001000000000
..................................................................................................................................................................................................................................................................................TT-----GCAAGTTGCTCAACAT---------------GTT........................................2111.00100000000001000000
.............................................................TGCTTGGA--AATAGTTTACCTGCGTAC..........................................................................................................................................................................................................................................................................2611.00100010000000000000
......................................................................................................................................................................................................................................AAATCG------------------AAC-AC----ACTCTTGAC..................................................................................2011.00100010000000000000
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-GA-A-T---------AACA.2611.00101000000000000000
...................................................................................................................................................................................................................................................................................................CAACAT---------------GTTTTGATGGGCGT.............................2011.00100000000000100000
..............................................................................................................................................................................................................................TG-GGCAAAAATCG------------------AAC-AC----ACTCTT.....................................................................................2411.00100000001000000000
..........................................................................................................................................................................................................................................................................TCTTGACATT-----GCAAGTTGCTCAACAT---------------GT.........................................2811.00100010000000000000
.......................................................................................................................................GACCC--AA-CAC--------TCCTC-TACA-----------CT----GACATCC.....................................................................................................................................................................2811.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................TTTTGATGGGCGTAAATGAAA-GA-A-T---------A....2611.00100000000001000000
........................................................................................................................................ACCC--AA-CAC--------TCCTC-TACA-----------CT----G...........................................................................................................................................................................2111.00110000000000000000
................................................................................................................................................................................................................AGGCC-AACTACACTG-GGCAAAAATCG------------------A....................................................................................................2711.00100000001000000000
......................................................................................................................................................................................................................AACTACACTG-GGCAAAAATCG------------------.....................................................................................................2111.00100000000000100000
..................................................................................................................AAC----ATATATTTAATTAAGACCC--AA-CAC--------T......................................................................................................................................................................................................2811.00100000001000000000
.............................................................TGCTTGGA--AATAGTTTACCTGCGTACAGT.......................................................................................................................................................................................................................................................................2911.00100010000000000000
........................................................................................................................................................................................................................CTACACTG-GGCAAAAATCG------------------AAA-.................................................................................................2211.00101000000000000000
.................................................................................................................................................CAC--------TCCTC-TACA-----------CT----GACATCCACACA--------CA......................................................................................................................................................2811.00100000001000000000
....................TTTATTACAGTTTATAGTTT-TGT-ACGTGTA...............................................................................................................................................................................................................................................................................................................3011.00100000010000000000
.....................................................................................................................................................................A-----------CT----GACATCCACACA--------CACTAAGGC...............................................................................................................................................2411.00100000001000000000
.......................................................................................................................................................................................GACATCCACACA--------CACTAAGGC...............................................................................................................................................2111.00100000000000100000
........................................................................................................................................................................................................................................................................................................T---------------GTTTTGATGGGCGTAAATGAA......................2211.00100010000000000000
..................................................................................................................................................................................T----GACATCCACACA--------CACTA...................................................................................................................................................1811.00100001000000000000
...................................................................................................................................................................................................................................CAAAAATCG------------------AAC-AC----ACTCTTGACATT-----GC........................................................................2811.00100000001000000000
..............................................................................................................................TTTAATTAAGACCC--AA-CAC--------TCCTC-TACA-----------C.................................................................................................................................................................................2911.00100010000000000000
.......................................................................................................................................................................................................................................................................................................AT---------------GTTTTGATGGGCGTAAATGAAA-GA-A-...............2711.00100000010000000000
...............................................................................................................................................................................................................AAGGCC-AACTACACTG-GG................................................................................................................................1811.00100010000000000000
....................................................TATGCCAATTGCTTGGA--AATA........................................................................................................................................................................................................................................................................................2111.00100000000010000000
.............................................................................................................................................................................................................................................................................TGACATT-----GCAAGTTGCTCAACAT---------------GT.........................................2511.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................TTGATGGGCGTAAATGAAA-GA-A-T---------AACA.2711.00100000000000010000
.........................................................................................................................................................................................................................TACACTG-GGCAAAAATC........................................................................................................................1720.50100000000001000000
droSec2
AATATAAAA----GTAATT-TTTGTTACAGTTTATAGTTT-TGT-ACGTGTATATGCCAATTGCTTGGA--AATAGTTTACCTGCGTACAGTTAATTATTTCAAAAAATACTGAAAC----ATATATT-AATTAAGACCC--AA-CAC--------TCCTC-TACA-----------CT----GACATCCACACA--------CACTAAGGCC-AACTACACTG-GACAAAAATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGTTGCTCAAAAT---------------GTTTTGATGGGCGTAAATGAAA-GA-A-T---------AACATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................TATGCCAATTGCTTGGA--AATAG.......................................................................................................................................................................................................................................................................................22112.00121371
...........................................................ATTGCTTGGA--AATAGTTTACC.................................................................................................................................................................................................................................................................................2113.0032001
..........................................................AATTGCTTGGA--AATAGTTTACCTGC..............................................................................................................................................................................................................................................................................2513.0030210
....................................................TATGCCAATTGCTTGGA--AATAGT......................................................................................................................................................................................................................................................................................2312.0021100
...........................................................................................................................................................................................................................................................................................................................TTGATGGGCGTAAATGAAA-GA-A-T---------.....2311.0010100
......................................................................................................................................................................................................................................................................................................AAT---------------GTTTTGATGGGCGTAAATGAAA-G...................2611.0010100
.................................................................................................................................................................................................................................................................................................CTCAAAAT---------------GTTTTGATGGGCGTA............................2311.0010001
..........................................................................................................................................................................................................................................................................................................................TTTGATGGGCGTAAATGAAA-GA-A-T---------AAC..2711.0010100
....................................................TATGCCAATTGCTTGGA--AATAGA......................................................................................................................................................................................................................................................................................2311.0010010
....................................................................................................................................................................................................................................................................................................AAAAT---------------GTTTTGATGGGCGTAAAT.........................2311.0010001
...........................................................ATTGCTTGGA--AATAGTTTACCTG...............................................................................................................................................................................................................................................................................2311.0010100
...................................................................................................................................................................................................................................................................................................CAAAAT---------------GTTTTGATGGGCGTAA...........................2211.0010010
........................................................................................................................................................................................................................................ATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGT....................................................................2711.0010010
...........................................T-ACGTGTATATGCCAATTGCTTGGA--............................................................................................................................................................................................................................................................................................2511.0010100
........................................................................................................................................................................................................................................................................................................................GTTTTGATGGGCGTAAATGAAA-G...................2311.0010100
....................................................TATGCCAATTGCTTGGA--AATAGTTTACC.................................................................................................................................................................................................................................................................................2811.0011000
.....................................................ATGCCAATTGCTTGGA--AATAG.......................................................................................................................................................................................................................................................................................2111.0010001
.........................................................................................................................................................................................................................................................................................................................TTTTGATGGGCGTAAATGAAA-G...................2211.0011000
..............................................................................................................................................................................................................................................................AAC-AC----ACTCTTGACATT-----GCAAGTTGC.................................................................2611.0011000
.......................................................................................................................................................................................................................................................................................................AT---------------GTTTTGATGGGCGTAAA..........................1911.0011000
...................................AGTTT-TGT-ACGTGTATATGC..........................................................................................................................................................................................................................................................................................................2011.0010100
........................................................................................................................................................................................................................................................................................................................GTTTTGATGGGCGTAAATGA.......................2011.0010100
..................................................................................................................................................................................................................................................................................................TCAAAAT---------------GTTTTGATGGGCGTAAATG........................2611.0010001
..................................TAGTTT-TGT-ACGTGTATATGCCAATTGC...................................................................................................................................................................................................................................................................................................2811.0011000
.................................................................TGGA--AATAGTTTACCTGCGTAC..........................................................................................................................................................................................................................................................................2211.0010100
......................................................................................................................................................................................................................................................................................................AAT---------------GTTTTGATGGGCGTAA...........................1911.0010100
.............................................................................................................................................................................................................................................................................TGACATT-----GCAAGTTGCTCAAAAT---------------GTT........................................2611.0011000
...............................................GTGTATATGCCAATTGCTTGGA--AATAGT......................................................................................................................................................................................................................................................................................2811.0010100
.................................................................TGGA--AATAGTTTACCTGC..............................................................................................................................................................................................................................................................................1811.0010001
...............................................................................................................................................................................................................................................................................................................................TGGGCGTAAATGAAA-GA-A-T---------A....2011.0010100
.......................................T-TGT-ACGTGTATATGCCAATTGCTTGGA--............................................................................................................................................................................................................................................................................................2811.0010100
.....................................................................................................................................................................................................................................................................................................AAAT---------------GTTTTGATGGGCGTAAAT.........................2211.0010100
.................................ATAGTTT-TGT-ACGTGTATATGCC.........................................................................................................................................................................................................................................................................................................2311.0010010
..........................................................AATTGCTTGGA--AATAGTTTACCTG...............................................................................................................................................................................................................................................................................2411.0010100
................ATT-TTTGTTACAGTTTATAGT.............................................................................................................................................................................................................................................................................................................................2111.0010100
......................................................................................................................................................................................................................................................................................................AAT---------------GTTTTGATGGGCGTAAATGAAA-....................2511.0010001
..........................................................................................................................................................................................................................ACACTG-GACAAAAATCG------------------AAC-AC----ACTCT......................................................................................2711.0011000
..............................................................GCTTGGA--AATAGTTTACCTGCG.............................................................................................................................................................................................................................................................................2211.0011000
...............................................................................................................................................................TC-TACA-----------CT----GACATCCACACA--------CACTA...................................................................................................................................................2511.0011000
................................TATAGTTT-TGT-ACGTGTATATGCCAATT.....................................................................................................................................................................................................................................................................................................2811.0010100
.....................................TTT-TGT-ACGTGTATATGCCAATTGCT..................................................................................................................................................................................................................................................................................................2611.0010100
..............................................................................................................................................AA-CAC--------TCCTC-TACA-----------CT----GACATC......................................................................................................................................................................2211.0011000
..................................................................................................................................................................................................................................................................AC----ACTCTTGACATT-----GCAAGTT...................................................................2111.0010010
dm3
AATATAAAG----GTAATTTTTTGTTACAGTTTATAGTTT-TGTAACGTGTATATGCCAATTGCTTGGA--AATAGTTTACATGCGTACAGTTAATTATTTCAAAAAATACTGAAAC----ATATATTTAATTAAGCCCC--AA-CAC--------TTCTC-TACA-----------CT----GACATCCATACA--------CACTAAGGCC-AGCTACACTG-GGCAAAAATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGTTGCTCAACAC---------------GTTTTGATGGGCGTAAATGAAA-TA-A-T---------AACACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................TTTTGATGGGCGTAAATGAAA-TA-A-T---------A....26135.003500000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000001002901000
...........................................TAACGTGTATATGCCAATTGC...................................................................................................................................................................................................................................................................................................21128.00280000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011210000000000000000000000000000005440202100050
....................................................TATGCCAATTGCTTGGA--AATAG.......................................................................................................................................................................................................................................................................................22127.00270000000000000000000000000000000000000000000000000001000000000000000000000000000100000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000001000000000000100100110000000000010200000000000002010000000200100300000000100100200
.........................................................................................................................................................................................................................................TCG------------------AAC-AC----ACTCTTGACATT-----GCAAGT....................................................................26124.00240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000007400200000010000100000202300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................TATGCCAATTGCTTGGA--AATAGT......................................................................................................................................................................................................................................................................................23119.00190000000000000000000000000000000000000000000000000000100001000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000010000100000000100000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000012001010000011001100000000100
........................................................................................................................................................................................................................................ATCG------------------AAC-AC----ACTCTTGACATT-----GCAAGT....................................................................27116.00160000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000003000300000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000400100
...........................................................................................................................................................................................................................................................................................................................TTGATGGGCGTAAATGAAA-TA-A-T---------AACA.27115.001500000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001210000
............................................................................................................................................................................................................................ACTG-GGCAAAAATCG------------------AAC-AC----ACTCT......................................................................................25114.00140000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000006000000010101000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000
.........................................................................................................................................................................................................................................................................................................................TTTTGATGGGCGTAAATGAAA-TA-A-T---------.....25114.001400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001101000000
...............................................................................................................................................................................................TACA--------CACTAAGGCC-AGCTACACTG-GGC...............................................................................................................................27111.00110000000000000000000000000000000000000000000000000000000000000000000000000000020010000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000200130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
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.....................................................................................................................................................................................................................................................................................................ACAC---------------GTTTTGATGGGCGTAAATG........................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................TACACTG-GGCAAAAATCG------------------AAC-AC----ACTCTT.....................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................ATTATTTCAAAAAATACTGAAAC----..........................................................................................................................................................................................................................................2312.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TACA-----------CT----GACATCCATACA--------CACTAAGG................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ATTTTTTGTTACAGTTTAT................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................TTTTGATGGGCGTAAATGAAA-TA-A-T---------AAA..2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
.......................................................................................................................................................................................................................................................................................................AC---------------GTTTTGATGGGCGTAAATGAA......................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-T...................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........................................TGTAACGTGTATATGCCAATTGCT..................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................CAAAAATCG------------------AAC-AC----ACTCTTGACATT-----GCA.......................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................C----ACTCTTGACATT-----GCAAGTTGCTCA..............................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000
.................................ATAGTTT-TGTAACGTGTATATGCC.........................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................C--------TTCTC-TACA-----------CT----GACATCCATACA--------CA......................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................C---------------GTTTTGATGGGCGTAAATG........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
..............................................................................................................................................................................................................................TG-GGCAAAAATCG------------------AAC-AC----ACTCTT.....................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................CTTGGA--AATAGTTTACATGCGTACAGT.......................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...........................................................ATTGCTTGGA--AATAGTTTACATGC..............................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AAC-AC----ACTCTTGACATT-----GCAAGTT...................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................CAAAAATCG------------------AAC-AC----ACTCTTGACATT-----..........................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................TTTATAGTTT-TGTAACGTGTATATGC..........................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000
.........................................................................................................................................................................................................................TACACTG-GGCAAAAATCG------------------AAC-AC----ACTC.......................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................................ATGGGCGTAAATGAAA-TA-A-T---------.....2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000
...........................................................................................................................................................................................................................................................................CTTGACATT-----GCAAGTTGCTCAACAC---------------GT.........................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TGCTCAACAC---------------GTTTTGATGGGCGTAAA..........................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CATGCGTACAGTTAATTATTTCAAAAAA.......................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
...........................................................................................................................................................................................................CACTAAGGCC-AGCTACACTG-GGCAAAA...........................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................CA-----------CT----GACATCCATACA--------CACTAAGGCC-AGC..........................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TAACGTGTATATGCCAATTGCTTGGA--AA..........................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000
.........................................TGTAACGTGTATATGCCAATTGCTTG................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
............................................................................................................................................................................................................................ACTG-GGCAAAAATCG------------------AAC-AC----ACTCTTGA...................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................TACAGTTAATTATTTCAAAAAATACT...................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................AAAATCG------------------AAC-AC----ACTCTTGACATT-----GCAAG.....................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................GTTTTGATGGGCGTAAATGA.......................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...................TTTTGTTACAGTTTATAGT.............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................CCAATTGCTTGGA--AATAGTTTACATGCG.............................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................C-AC----ACTCTTGACATT-----GCAA......................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................AA-CAC--------TTCTC-TACA-----------CT----GACATCCATAC.................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TACA-----------CT----GACATCCATACA--------CAC.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................TATATGCCAATTGCTTGGA--AAT.........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ACTCTTGACATT-----GCAAGTTGCTCAA.............................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................TC-TACA-----------CT----GACATCCATACA--------CACTAAGG................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TGCTCAACAC---------------GTTTTGATGGGCGTAAAT.........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................ACTG-GGCAAAAATCG------------------AAC-A................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................GTTTATAGTTT-TGTAACGTGT................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................CC-AGCTACACTG-GGCAAAAATCG------------------AA...................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................AAGTTGCTCAACAC---------------GTTTTGATGGGCGTA............................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................T----GACATCCATACA--------CACTAAGGCC-AGA..........................................................................................................................................2611.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................ATT-----GCAAGTTGCTCAACAC---------------GTTT.......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................CTC-TACA-----------CT----GACATCCATACA--------C.......................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................CAAAAATCG------------------AAC-AC----ACTCTTGACATT-----GCAA......................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................CACTG-GGCAAAAATCG------------------AAC-AC----ACT........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-TA-A-T---------AACAA2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................TACA--------CACTAAGGCC-AGCTAC.......................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................CC-AGCTACACTG-GGCAAA............................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TTCAAAAAATACTGAAAC----ATAT......................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TATTTAATTAAGCCCC--AA-CAC--------TTCTC-.................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AATATAA----------------------------AGTTT-TGT-ACGTGTATATGCCAATTACTTGGA--AATAGTTTACCCGTGTACAGTTAATTATTTCAAAAACTATTAAAAC----ATATATTTAATTAAGCCCC--AA-CAC--------TCATA-TACA-----------CT----GACACCCACACA------CACACTAAGGCC-AACTACACTG-GGCAAAAATCT------------------AAC-AA----ACCCTTGACATT-----GCAAGTTGCTCAACAT---------------TTTTTGATGGGCGTAAATGAAA-GA-A-T---------AACATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................GT-ACGTGTATATGCCAATTACTTGGA--............................................................................................................................................................................................................................................................................................2615.0052000300
.......................................................................................................................................................................................................................................................................................................AT---------------TTTTTGATGGGCGTAAAT.........................2013.0030010110
......................................................................................................................................................................................................................................................................................................CAT---------------TTTTTGATGGGCGTAAAT.........................2113.0030000300
..............................................................................................................................................................................................................................TG-GGCAAAAATCT------------------AAC-AA----ACCCTTGACA.................................................................................2812.0022000000
.........................................TGT-ACGTGTATATGCCAATTACT..................................................................................................................................................................................................................................................................................................2312.0021000100
........................................................................ATAGTTTACCCGTGTACAGTTAATTA.................................................................................................................................................................................................................................................................2612.0020000200
..............................................................................................................................TTTAATTAAGCCCC--AA-CAC--------TCATA-.................................................................................................................................................................................................2411.0011000000
....................................................................................................................................................................................................................................AAAAATCT------------------AAC-AA----ACCCTTGACATT-----GC........................................................................2711.0011000000
...........................................................ATTACTTGGA--AATAGTTTACCC................................................................................................................................................................................................................................................................................2211.0010010000
.............................................................TACTTGGA--AATAGTTTACCCGTGTACA.........................................................................................................................................................................................................................................................................2711.0011000000
........................................................................................................................................................................................................................................ATCT------------------AAC-AA----ACCCTTGACATT-----GCAAGT....................................................................2711.0011000000
..........................................................................................................................................................................................................................................................................................................................TTTGATGGGCGTAAATGAAA-GA-.................2211.0011000000
.....................................................................................................................................................................A-----------CT----GACACCCACACA------CACA......................................................................................................................................................1911.0011000000
...................................................................................................................................................................................................................................................................................................CAACAT---------------TTTTTGATGGGCGTAAAT.........................2411.0010000010
.......................................................................................................................................................................................GACACCCACACA------CACACTAAGGCC-AAC..........................................................................................................................................2711.0011000000
..............................................................................................................................................................................................................TAAGGCC-AACTACACTG-GGCAAAAATC........................................................................................................................2711.0010000001
.........................................TGT-ACGTGTATATGCCAATTACTTGGA--A...........................................................................................................................................................................................................................................................................................2811.0010000100
...................................................................................GTGTACAGTTAATTATTTC.............................................................................................................................................................................................................................................................1911.0010000100
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-GA-A-T---------AACAT2711.0010000010
...................................AGTTT-TGT-ACGTGTATATGCCA........................................................................................................................................................................................................................................................................................................2211.0010000100
.............................................................................................................................................................................................................CTAAGGCC-AACTACACTG-GGC...............................................................................................................................2111.0010100000
.......................................T-TGT-ACGTGTATATGCCAATTACT..................................................................................................................................................................................................................................................................................................2411.0010000100
...............................................................................................................................................................TA-TACA-----------CT----GACACCCACACA------CACAC.....................................................................................................................................................2511.0011000000
..........................................................................................................................................................................................................................................CT------------------AAC-AA----ACCCTTGACATT-----GCAAGTTGCT................................................................2911.0010000100
.........................................................................................................................................................................................................................TACACTG-GGCAAAAATCT------------------AAC-AA----ACCCT......................................................................................2811.0011000000
.........................................TGT-ACGTGTATATGCCAATTACTTGGA--............................................................................................................................................................................................................................................................................................2711.0010001000
........................................................................................................................................................................................................................................................................................................T---------------TTTTTGATGGGCGTAAATGAAA-....................2311.0010000010
......................................TT-TGT-ACGTGTATATGCCAATTACTTGGA--............................................................................................................................................................................................................................................................................................2911.0010000100
.....................................................................................................................................................................................................................................................................................................ACAT---------------TTTTTGATGGGCGTAAAT.........................2211.0010000010
...................................................................................................................................................................................................................................................................................T-----GCAAGTTGCTCAACAT---------------TTTTTGATGG.................................2711.0011000000
...............................................................................................................................................................................................................................................................................ACATT-----GCAAGTTGCTCAACAT---------------TTTT.......................................2511.0011000000
............................................................................TTTACCCGTGTACAGTTAATTATTT..............................................................................................................................................................................................................................................................2511.0011000000
...ATAA----------------------------AGTTT-TGT-ACGTGTATATGCC.........................................................................................................................................................................................................................................................................................................2511.0010000100
........................................................................................................................................................................................................................................................................................................................TTTTTGATGGGCGTAAATGAAA-G...................2311.0010000100
............................................................................................................................................................TCATA-TACA-----------CT----GACACCCACACA------CACAC.....................................................................................................................................................2811.0011000000
...................................................................................................................................................................................................................................................................................................CAACAT---------------TTTTTGATGGGCGTAAATGAA......................2711.0010000100
........................................................................................................................................................................................................................................................................................................................TTTTTGATGGGCGTAAATG........................1911.0010000010
.........................................................................................................................................................................................................................................TCT------------------AAC-AA----ACCCTTGACATT-----GCAAGTT...................................................................2711.0011000000
.............................................................................................................................................................CATA-TACA-----------CT----GACACCCACA..................................................................................................................................................................2011.0010000010
.........................................................................................................................................................................................................................................TCT------------------AAC-AA----ACCCTTGACATT-----G.........................................................................2111.0011000000
.ATATAA----------------------------AGTTT-TGT-ACGTGTATATGCC.........................................................................................................................................................................................................................................................................................................2711.0010010000
.ATATAA----------------------------AGTTT-TGT-ACGTGT................................................................................................................................................................................................................................................................................................................2011.0010000100
................................................................................................................................................................................................ACA------CACACTAAGGCC-AACTAC.......................................................................................................................................2111.0011000000
..................................................................................................................................................................................T----GACACCCACACA------CACACTAAGGCC-AAC..........................................................................................................................................2811.0011000000
...............................................................................................................................................................................................CACA------CACACTAAGGCC-AACTACA......................................................................................................................................2311.0011000000
........................................................................................................................................................................................................................................ATCT------------------AAC-AA----ACCCTTGACAT................................................................................2011.0010100000
........................................................................ATAGTTTACCCGTGTACAGTTAATT..................................................................................................................................................................................................................................................................2511.0010000100
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-GA-A-T---------AA...2411.0010000010
........................................................................................................................................CCCC--AA-CAC--------TCATA-TACA-----------CT----GACACC......................................................................................................................................................................2611.0011000000
......A----------------------------AGTTT-TGT-ACGTGTATATGCC.........................................................................................................................................................................................................................................................................................................2211.0010000010
...............................................................................................................TAAAAC----ATATATTTAATTAAGCCCC--AA-..................................................................................................................................................................................................................2711.0010000001
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-GA-A-T---------AACA.2611.0010000100
droYak3
AATATAAAT----TAAATT-TTGTTTACAGCTTACAGTTT-TGT-AAGCGTATATGCCAATTACTTGGA--AATAGTTTACCTGTGTTCAGTTAATTATTTCAAAAACTATTGAAAC----ATATATT-AATTAAGCCCC--AAACAC--------TCCTC-TACA-----------CT----GACACCCACACA------CACACTAAGGCC-AACTACACTG-GGCCAAAATCT------------------AAC-GA----ACTCTTGACATT-----GCAAGTTGCTCAACAT---------------TTTTTGATGGGCGTAAATGAAA-GC-A-T---------AGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................T-TGT-AAGCGTATATGCCAATTACTTGGA--............................................................................................................................................................................................................................................................................................2813.00300000030000
...................................................................................................................................................................................................................................................................................................CAACAT---------------TTTTTGATGGGCGTA............................2113.00300000030000
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-GC-A-T---------AGC..2513.00301000020000
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-GC-.................2012.00200000020000
..............................................................................................................................................................................................................................................................AAC-GA----ACTCTTGACATT-----GCAAGTTGCTC...............................................................2812.00220000000000
...........................................................ATTACTTGGA--AATAGTTTACCTGT..............................................................................................................................................................................................................................................................................2412.00201000010000
......................................TT-TGT-AAGCGTATATGCCAATTACTTGGA--............................................................................................................................................................................................................................................................................................2912.00200000020000
.........................................TGT-AAGCGTATATGCCAATTACTTGGA--............................................................................................................................................................................................................................................................................................2712.00201000010000
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-GC-A-T---------.....2212.00200000020000
......................................TT-TGT-AAGCGTATATGCCAA.......................................................................................................................................................................................................................................................................................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................................TTTTTGATGGGCGTAAATGAAA-GC-A-...............2511.00100000010000
........................................................................................................................................................................................................................................................................................................................TTTTTGATGGGCGTAAATGAAA-....................2211.00100000010000
................................................................TTGGA--AATAGTTTACCTGT..............................................................................................................................................................................................................................................................................1911.00101000000000
..........................................................................................................................................................................................................................................CT------------------AAC-GA----ACTCTTGACATT-----GCAAGTTGCT................................................................2911.00110000000000
......................................TT-TGT-AAGCGTATATGCCA........................................................................................................................................................................................................................................................................................................1911.00101000000000
......................................................................................................................................................................................................................................................................................................CAT---------------TTTTTGATGGGCGTAAATGA.......................2311.00100000010000
..........................................GT-AAGCGTATATGCCAATTACTTGGA--............................................................................................................................................................................................................................................................................................2611.00100000010000
...................................AGTTT-TGT-AAGCGTATATGC..........................................................................................................................................................................................................................................................................................................2011.00100000010000
..................................................................................................................................................................................T----GACACCCACACA------CACACTAAGGCC-AA...........................................................................................................................................2711.00101000000000
........................................................................................................................................................................................ACACCCACACA------CACACTAAGGCC-AAC..........................................................................................................................................2611.00101000000000
.......................................................................................................................................................................................................................................................................................................AT---------------TTTTTGATGGGCGTAAATGA.......................2211.00100000010000
..............................................................................................................................................................CTC-TACA-----------CT----GACACCCACACA------C.........................................................................................................................................................2211.00101000000000
.......................................................................................................................................................................................GACACCCACACA------CACACTAAGGC...............................................................................................................................................2311.00101000000000
..........................................................................................................................................................................................................................................CT------------------AAC-GA----ACTCTTGACATT-----GCAAGT....................................................................2511.00110000000000
..............................................................................................ATTATTTCAAAAACTATT...................................................................................................................................................................................................................................................1811.00101000000000
............................................................................................................................................................................................................................................................................................................................TGATGGGCGTAAATGAAA-GC-A-T---------AGCAT2711.00100000010000
.......................................................................................................................................................................................................................................................................................................AT---------------TTTTTGATGGGCGTAAATGAA......................2311.00100000010000
...........................................................................................................................................................................................................................................................................................................................TTGATGGGCGTAAATGAAA-GC-A-T---------AG...2511.00100000010000
.............................................AAGCGTATATGCCAATTACTTGGA--............................................................................................................................................................................................................................................................................................2411.00100000010000
.................................................................................CTGTGTTCAGTTAATTATTTCAAAAACTA.....................................................................................................................................................................................................................................................2911.00100000010000
..............................................................................................................................................................CTC-TACA-----------CT----GACACCCACACA------CA........................................................................................................................................................2311.00101000000000
...............................................................................................................................................AACAC--------TCCTC-TACA-----------CT----GACACCCACA..................................................................................................................................................................2611.00101000000000
.......................................................................................................................................................................................................................................................................................................AT---------------TTTTTGATGGGCGTAAATGAAA-GC-.................2611.00100000010000
...................................................................................................................................................................................................................................................................................................CAACAT---------------TTTTTGATGGGCGT.............................2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................GATGGGCGTAAATGAAA-GC-A-T---------.....2111.00100000010000
...............AATT-TTGTTTACAGCTTAC................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................ATTACTTGGA--AATAGTTT....................................................................................................................................................................................................................................................................................1811.00100000100000
....................................................................................................................................................................................................................................................................................................AACAT---------------TTTTTGATGGGCGTAAATGAAA-GC-.................2911.00100000010000
.....................................................................................................................................................................................................................................AAAATCT------------------AAC-GA----ACTCTTGACATT-----GCA.......................................................................2711.00101000000000
...........................................................................................................................................................................................................................................................................................................................TTGATGGGCGTAAATGAAA-GC-A-T---------AGC..2611.00100000010000
...................................................................................................................................................................................................................CC-AACTACACTG-GGCCAAAATCT------------------AAC-.................................................................................................2611.00101000000000
........................................................................................................................................................................................................................................................................................................T---------------TTTTTGATGGGCGTAAATGAAA-GC-A-T---------AGC..3011.00100000010000
.................................................................................................................................................................................................................................GGCCAAAATCT------------------AAC-GA----ACTC.......................................................................................2011.00110000000000
..........................................................................................................................................................................................................ACACTAAGGCC-AACTACACTG-GG................................................................................................................................2311.00101000000000
....................................................................A--AATAGTTTACCTGTGTTCAGTTAATT..................................................................................................................................................................................................................................................................2711.00101000000000
...............................................................................................................................................................................................................................................................AC-GA----ACTCTTGACATT-----GCAAGTT...................................................................2311.00101000000000
...................................................................................................................................................................................................................................................................................................CAACAT---------------TTTTTGATGGGCGTAAATGAA......................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................GGCGTAAATGAAA-GC-A-T---------AGCAT2211.00101000000000
........................TTACAGCTTACAGTTT-TGT-AAGCGT................................................................................................................................................................................................................................................................................................................2511.00101000000000
........................................................................................................................................................................................................................................................................................................T---------------TTTTTGATGGGCGTAAATGAAA-GC-.................2511.00100000010000
...........................................................................................................................................................................................................................................T------------------AAC-GA----ACTCTTGACATT-----GCAAGTT...................................................................2511.00101000000000
....................................................................................................................................................................................................................C-AACTACACTG-GGCCAAAAT.........................................................................................................................2011.00101000000000
...................................................................................................................................................................................................................................................................A----ACTCTTGACATT-----GCAAGTTGCT................................................................2311.00100000010000
droEug1
TATTTCA--------------------------------------------ATATGCAAATTTTTTGGA--AATCGCTTGCCCGTGGACAGTTATTTCTTTCCAAAACTGTTGAAAGATGCATATATTTTTTTAAGTCCC-CGAAAAA--------T--CC-AACA-----------TT----AACAACCATATA--------CACACATACA-C---ACACTGTGGCAAAAAGCT------------------AGC-AA----ACTCTTGACATT-----GCAAGTTGCTCAACAT---------------TTTTTGCTGGGCGTAAATGAAA-GG-A-A---------AACATSizeHit CountTotal NormTotal
No Reads
droBia1
AACTTGA------------------------------------------GTATCTGTCAGTTCCTTGGA--TGAAACTTGCCCGCTGACAGTTATTTCTTTTCGAAACTGTTGAAAG----ATATATTTTTTTAAGCCCC-CGAGAAC--------TCCTC-CACA-----------CT----AACACCCACACT--------AAC-------------------------------------------------AC-AA----ACTCTTGACATT-----GCTAGTTGCTCAACAT---------------TTTTTGCTGGGCGTAAATGAAG-GG-A-A---------AGCATSizeHit CountTotal NormTotal
No Reads
droTak1
TATCGCA--------------------------------------------------CATTTCCTTGGA--AAAA-CTTGCCCGTCGAAAGTTATTTCTTTCCAAAATCGTTGAAAG----ATATATTTTTTTAAGCCCCCCGAAAAT--------TCCTC-TACA-----------CT---TAACACCCACG-----ACACACACTATGGCC-AACTACACTG-GGCAAAAAGCT------------------AAC-AA----ACTCTTGACATT-----GCAAGTTGCTCAACCT---------------TTTTTGCTGGGCGTAAATGAAA-GG-G-A---------AACATSizeHit CountTotal NormTotal
No Reads
droEle1
ATTTG-AAATCCTGAAAGA-TCCATTTC-GTTTATAGTTTATGT-GCGTGTACATGCCAGTTCCTTGGA--AGTGGCTTGCTTGCGTATAGTTATTTCTTTCTAAAACTGTTGAGAA----ATATATTTTTTTAAGCCCC-CGACAAT--------TCCTCCAACA-----------CT----AACACCCACTTA--------CACTATCGCC-AACTACAATG-GGCAAT--GCT------------------AAC-A-----ACGCTTGACATTGCATTGCAAGTTGCTCAACCTT--------------TTTTTGCCGGGCGTAAATGAAA-GG-A-A---------AACATSizeHit CountTotal NormTotal
No Reads
droRho1
ATTTG-AAATCCTCAAAAT-TTGATTTCA-TTTATAGTTTATTT-GCGTGTACATGCCAACTCCTTAGATAGATGGCTTGCTCATGGATAGTTATTTCTTTCTAAAACTGTTGAAAAA---ATATATTTTTTTAAGGCCC-CGACAAC--------TCCTA-AACA-----------CT----AACACGCACTTA--------CACTATCGCC-AAATACATTG-GGA--AAATCT------------------AAC-AA----ACTCTTGACATT-----GCAAGTTGCTCAACAT----------------TTTTGCTGGGCGTAAATGAAA-GG-A-A---------AACATSizeHit CountTotal NormTotal
No Reads
droFic1
TATTTGAAATCAT-----------------CATAAGCTTT-TGT-GTGTGTACATGAAAACCCCTTCAA--AATGTCTTCCCCGTGGATAATTATTTCTTTCCAAAACTGTTGAAAG----ATATATTTTTTTAAGGCCA-CGAAAAC--------TCCTC-TACA-----------CTATATAACACCCACACATACACAAACACTATCGCC-AACTTCACTG-GGCAAA--GCT------------------AAC-AA----ACTCTTGACATT-----GCAAGTTGCTCAACAT---------------TTTAAGCTGGGCGTAAATGACA-GC-A-T---------AACATSizeHit CountTotal NormTotal
No Reads
droKik1
T-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACTG-GGCGAAAAGCG--------AGGCAAAGCTAAGCAA--C-TCTCTTGACATT-----GCAAGTTGCTCAACATTT---------ATTTTTTGGAATGGGCGTAAATAAGAAGG-A-A---------AACATSizeHit CountTotal NormTotal
No Reads
droAna3
TCTGG----------------------------------------TTGTGCAAATTTAAATTTCTTAAA--ACTAGCCTT-------ACGGAAGA--CTATCCGAAGCTATTGAA-G----ATATATT-TTTTAAGCCCC------------------CCC-TACA-----------TT----TAATCACA------------CATTTT--CCACACTACACTG-GGCGAA--GCG------------------AAA--T----AAACTTGACATTG--TTGTTGGTTGCTCAACTA---------------CAGTAGCTGGGCGTAAATGAAT-GG-A-A---------GACACSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................CTA---------------CAGTAGCTGGGCGTAAA..........................2014.004000004
...........................................................................GCCTT-------ACGGAAGA--CTATCCGA..........................................................................................................................................................................................................................................................2114.004000040
............................................................................................................................................................................................................................................................................................................................AGCTGGGCGTAAATGAAT-GG-A-A---------.....2212.002000002
.................................................................................................................................................................................................................................................................................ATTG--TTGTTGGTTGCTCAA.............................................................1912.002100010
....................................................................................................................................................................................................................................................................................................AACTA---------------CAGTAGCTGGGCGTAAATG........................2412.002000002
..........................................................................................................................................................................................................................ACACTG-GGCGAA--GCG------------------AAA--T----A..........................................................................................2012.002000002
..................................................................................................................................................................................................................................................................................................TCAACTA---------------CAGTAGCTGGGC...............................1912.002010001
............................................................................................................................................................................................................................................................................................................................AGCTGGGCGTAAATGAAT-G...................1912.002100010
............................................................................................................................................................................................................................................................................................................................AGCTGGGCGTAAATGAAT-GG-A-A---------GACA.2612.002000002
.......................................................................................................................................................................................................................ACTACACTG-GGCGAA--GCG------------------AA...................................................................................................2011.001000001
.....................................................................................................................................................................................................................................................................................................ACTA---------------CAGTAGCTGGGCGTAA...........................2011.001000010
........................................................................................................................................................................................................................................................................AAACTTGACATTG--TTGTTGGTTGCTC...............................................................2611.001010000
.........................................................................................................................................................................................................................................................................................................................AGTAGCTGGGCGTAAATGAAT-G...................2211.001000001
...........................................................ATTTCTTAAA--ACTAGCCTT-------ACGGA.......................................................................................................................................................................................................................................................................2411.001100000
............................................................................................................................................................................................................................ACTG-GGCGAA--GCG------------------AAA--T----AAACT......................................................................................2211.001000001
.....................................................................................................................................................................................................................ACACTACACTG-GGCGAA--GCG------------------AAA--T----...........................................................................................2411.001000001
......................................................................................................................................................................................................................................................................................................CTA---------------CAGTAGCTGGGCGTAAAT.........................2111.001000010
...............................................................CTTAAA--ACTAGCCTT-------ACGGAAGA--CTA...............................................................................................................................................................................................................................................................2611.001100000
............................................................................................................................................................................................................................................................................................................................AGCTGGGCGTAAATGAAT-GG-A-A---------GACAC2711.001100000
.............................................................................................................................................................................................................................CTG-GGCGAA--GCG------------------AAA--T----AAAC.......................................................................................2011.001000001
....................................................................................................TCCGAAGCTATTGAA-G----ATATATT-..................................................................................................................................................................................................................................2311.001000001
..........................................................................................................................TATATT-TTTTAAGCCCC------------------CC...................................................................................................................................................................................................1911.001010000
........................................................................................................................................................................................................................CTACACTG-GGCGAA--GCG------------------AAA--................................................................................................2011.001000001
............................................................................................................................................................................................................................................................................................................................AGCTGGGCGTAAATGAAT-GG-A-...............2111.001000001
..........................................................................AGCCTT-------ACGGAAGA--CTATCCGAA.........................................................................................................................................................................................................................................................2311.001000010
..................................................................................................................................................................................................................................................................................................TCAACTA---------------CAGTAGCTGGGCGTAAAT.........................2511.001000001
......................................................................................................................................................................................................................................................................................................CTA---------------CAGTAGCTGGGCGTAAATGAAT-GG-A-...............2811.001100000
.........................................................................................................................................................................................................................TACACTG-GGCGAA--GCG------------------AAA--T----...........................................................................................2011.001000001
.............................................................................................GA--CTATCCGAAGCTATTGAA-G----AT........................................................................................................................................................................................................................................2311.001000001
...........................................................................................................................................................................................................................................G------------------AAA--T----AAACTTGACATTG--TTGTT.......................................................................2311.001010000
..........................................................................................................................................................................................................................................................................................................................GTAGCTGGGCGTAAATGAAT-GG-.................2211.001100000
...........................................................................................................................................................................................................................CACTG-GGCGAA--GCG------------------AAA--T----AAAC.......................................................................................2211.001000001
..........................................................................................................................................................................................................................ACACTG-GGCGAA--GCG------------------AAA--T----...........................................................................................1911.001000001
...............................................................................................................................................................................................................................G-GGCGAA--GCG------------------AAA--T----AAACTT.....................................................................................2011.001000001
......................................................................................................................................................................................................................................................................................................CTA---------------CAGTAGCTGGGCGTAAATGAAT-....................2511.001000010
..................................................................................................................................................................................................................................................................................................TCAACTA---------------CAGTAGCTGGGCGTA............................2211.001000001
.....................................................................................................................................................................................................................................................................................................ACTA---------------CAGTAGCTGGGCGTA............................1911.001100000
............................................................TTTCTTAAA--ACTAGCCTT-------ACGGA.......................................................................................................................................................................................................................................................................2311.001100000
............................................................................................................................................................................................................................................................................TTGACATTG--TTGTTGGTTGCTC...............................................................2211.001000001
...............................................................................................................................................................CC-TACA-----------TT----TAATCACA------------CA......................................................................................................................................................1811.001010000
............................................................................................................................................................................................................ATTTT--CCACACTACACTG-GGCG..............................................................................................................................2211.001000001
..................................................................................................TATCCGAAGCTATTGAA-G----..........................................................................................................................................................................................................................................1811.001000001
.......................................................................................................................................................................................................................................................................................................TA---------------CAGTAGCTGGGCGTAAAT.........................2011.001000001
..............................................................................................................................................................................................................TTT--CCACACTACACTG-GGCGAA--GC........................................................................................................................2411.001000001
.........................................................................................................................................................................................................................................GCG------------------AAA--T----AAACTTGACATTG--TTGTTGGT....................................................................2811.001010000
............................................................................................................................................................................................................................................................................................................................AGCTGGGCGTAAATGAAT-GG-A-A---------G....2311.001000010
...........................................................................GCCTT-------ACGGAAGA--CTATCCGAAGC.......................................................................................................................................................................................................................................................2411.001000100
........................................................................................................................................................................................................................................................................................................................CAGTAGCTGGGCGTAAATGAAT-GG-A-A---------.....2611.001010000
..................................................................AAA--ACTAGCCTT-------ACGGAAGA--CTATCC............................................................................................................................................................................................................................................................2611.001010000
.............................................................................................................................................................................................................................CTG-GGCGAA--GCG------------------AAA--T----AAACTTGACA.................................................................................2611.001000010
.............................................................................................GA--CTATCCGAAGCTATTGA.................................................................................................................................................................................................................................................1911.001100000
..........................................................................................................................................................................................................................................................................................................................GTAGCTGGGCGTAAATGAAT-GG-A-...............2311.001001000
..........................................................................................................................................................................................................................................................................ACTTGACATTG--TTGTTGGTTGCTC...............................................................2411.001010000
.............................................................................................................................................................................................................................................................................................................................GCTGGGCGTAAATGAAT-GG-A-A---------G....2211.001000001
droBip1
TCTGG----------------------------------------TTGTGCACACTTGGGTTTCTTAAA--ACTAGCCTT-------ACAG-----------AAACACTATTGAA-G----ATGTATC-TTTTAAGCCCC--AA-TCC--------CCCAA-TACAAGCCCTATGCATTATAC----------TA--------CACTTT--CCACACTACACTG-GGCGAA--GCT------------AAAGCTAAA--T----AAACTTGACATT-----GTTGGTGGCCCAACTA---------------CAGGGACTGGGCGTAAATGAAA-GG-C-CGACAACAACAACAASizeHit CountTotal NormTotal
No Reads
dp5
A----------------------------------------------------------------------------------------------TTCTTTCGAAAACTTTTGGAGAGT--GTATATTTTTTTAAGCCCT--GA-CAAAAGTAAAAGATTC-TACA-----------TT----GAAATGTACACC--------CACTAA--CA-CACAACACA---AAAAAACACGAGCACTATAGAGAAACCTAAG-GGTTCTGTTCTTGACATT-----TAACGATGCTGAACAA---------------TTTTTGCTGGGCGTAAATAAAG-GT-A-A---------AACAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
............................................................................................................................................................................................................................................................................................................................TGCTGGGCGTAAATAAAG-GT-A-...............2112.0020000011000
.........................................................................................................................................................AAAGATTC-TACA-----------TT----GAAATGTACACC--------CA......................................................................................................................................................2811.0010001000000
......................................................................................................................................................GTAAAAGATTC-TACA-----------TT----GAAAT.......................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................TT----GAAATGTACACC--------CACTAA--CA-CA...........................................................................................................................................2411.0010100000000
.............................................................................................................................................................................................TACACC--------CACTAA--CA-CACAACACA---AAA..............................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................................................................T-----TAACGATGCTGAACAA---------------TTT........................................2011.0010010000000
.....................................................................................................................................................................................................................................AAACACGAGCACTATAGAGAAAC.......................................................................................................2311.0010010000000
..........................................................................................................................................................................................................................................................................................................................TTTGCTGGGCGTAAATAAAG-GT-A-...............2311.0010000001000
........................................................................................................................................................................................................................................................................................................................TTTTTGCTGGGCGTAAATAAAG-GT-A-...............2511.0010001000000
.............................................................................................................................................................ATTC-TACA-----------TT----GAAATGTACACC--------CACT....................................................................................................................................................2611.0010100000000
.....................................................................................................................................................................A-----------TT----GAAATGTACACC--------CACTAA--CA-CACA.........................................................................................................................................2711.0010010000000
...............................................................................................................TGGAGAGT--GTATATTTTTTT..............................................................................................................................................................................................................................2011.0010000001000
.......................................................................................................................................................................................................................................................GAAACCTAAG-GGTTCTGTTCTTGAC..................................................................................2511.0010010000000
....................................................................................................................................TAAGCCCT--GA-CAAAAGTAAAAGATTC-.................................................................................................................................................................................................2611.0010100000000
...................................................................................................................................................................................................................................................................................................GAACAA---------------TTTTTGCTGGGCGTAAATA........................2511.0010000001000
.............................................................................................................................................................................................................................................................................................................................GCTGGGCGTAAATAAAG-GT-A-A---------AAC..2411.0010100000000
........................................................................................................................................................................................................................................................................GTTCTTGACATT-----TAACGATGCT................................................................2211.0010010000000
................................................................................................................................................................................................................................................................................................GCTGAACAA---------------TTTTTGCTGGGC...............................2111.0010100000000
.......................................................................................................AAAACTTTTGGAGAGT--GTATATTTTT................................................................................................................................................................................................................................2611.0010010000000
.....................................................................................................................................................................................................................................................................................................ACAA---------------TTTTTGCTGGGCGTAAATA........................2311.0010000001000
droPer2
A----------------------------------------------------------------------------------------------TTCTTTCGAAAACTTTTGGAGAGT--GTATATTTTTTTAAGCCCT--GA-CAAAAGAAAAAGATTC-TACA-----------TT----GAAATGTACACC--------CCCACTAACA-CACAACACA----AAAAACACGAGCACTATAGAGAAACCTAAG-GGTTCTGTTCTTGACATT-----TAACGATGCTGAACAA---------------TTTTTGCTGGGCGTAAATAAAG-GT-A-A---------AACAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...............................................................................................................................................................................................................................................................................................TGCTGAACAA---------------TTTTTGCTGGGC...............................2213.003300000
..............................................................................................................................................................................................................................................................AAG-GGTTCTGTTCTTGACA.................................................................................1911.001000001
...............................................................................................................................................................................................................................................................AG-GGTTCTGTTCTTGACA.................................................................................1811.001000010
...................................................................................................................................................................................................................................................................................................GAACAA---------------TTTTTGCTGGGC...............................1811.001100000
..................................................................................................................................................................................................................................................ATAGAGAAACCTAAG-GGTT.............................................................................................1911.001001000
......................................................................................................................................................................................................................................AACACGAGCACTATAGAGAAAA.......................................................................................................2211.001000001
............................................................................................................................................................................................................................................................CTAAG-GGTTCTGTTCTTGAC..................................................................................2011.001100000
...................................................................................................................................................................................................................................AAAAACACGAGCACTATAGAGAAACC......................................................................................................2611.001000001
..................................................................................................................................................................................................................................................................................TT-----TAACGATGCTGAACAA---------------T..........................................1911.001010000
droVir3
AAAAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-GA----ATTCTTGAC----------ACATTGCTCAACAGGT-------------TTTTTGCTGGGCGTAAATAACA-AT-ATT---------GAAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................CAACAGGT-------------TTTTTGCTGGGCGTAAAT.........................2612.002001000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................................................................................................................................................................................................AGGT-------------TTTTTGCTGGGCGTAAAT.........................2212.002002000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................AGA-GA----ATTCTTGAC----------ACATTGCTCAAC............................................................2612.002002000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AACAGGT-------------TTTTTGCTGGGCGTA............................2212.002001000000000000000000000000000000000000000000000000000000000010
......AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-GA----ATTCTTGAC----------ACATTGCT................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ATTCTTGAC----------ACATTGCTCAACAGGT-------------T..........................................2611.001000000000000000000000000001000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AACAGGT-------------TTTTTGCTGGGCGTAAAT.........................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CAACAGGT-------------TTTTTGCTGGGCGTA............................2311.001000000000000000000000010000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................GCTCAACAGGT-------------TTTTTGCTGGGCG..............................2411.001000000000000000000000010000000000000000000000000000000000000000
AAAAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-GA----ATTCTTGAC----------ACA.....................................................................2511.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................CTCAACAGGT-------------TTTTTGCTGGGCGTAA...........................2611.001000000000000000000100000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................AGGT-------------TTTTTGCTGGGCGTAA...........................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AACAGGT-------------TTTTTGCTGGGCGT.............................2111.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AACAGGT-------------TTTTTGCTGGGCGTT............................2211.001000000000000000000000000000010000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GA-GA----ATTCTTGAC----------ACATTGCT................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................CAACAGGT-------------TTTTTGCTGGGC...............................2011.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................ACAGGT-------------TTTTTGCTGGGC...............................1811.001010000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................GGT-------------TTTTTGCTGGGCGTAAATAACA-....................2511.001001000000000000000000000000000000000000000000000000000000000000
...AGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-GA----ATTCTTGAC----------ACAT....................................................................2311.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................AACAGGT-------------TTTTTGCTGGGC...............................1911.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................GA----ATTCTTGAC----------ACATTGCTCA..............................................................2111.001000000000000000000000000000000000100000000000000000000000000000
.AAAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-GA----ATTCTTGAC----------........................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
..................................................................................................................................................................................................................................................................GA----ATTCTTGAC----------ACATTGCTC...............................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GA-GA----ATTCTTGAC----------ACATTGCTCAAC............................................................2511.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TTTTTGCTGGGCGTAAATAACA-....................2211.001000000000000000100000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................TTGCTGGGCGTAAATAAC......................1811.001100000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................GTAAATAACA-AT-ATT---------GAAAT2011.001001000000000000000000000000000000000000000000000000000000000000
......AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-GA----ATTCTTGAC----------ACATTG..................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................TCAACAGGT-------------TTTTTGCTGGGCGTAAA..........................2611.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ATTCTTGAC----------ACATTGCTCA..............................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................ACATTGCTCAACAGGT-------------TTTTT......................................2111.001001000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................TCTTGAC----------ACATTGCTCAACAGGT-------------T..........................................2411.001001000000000000000000000000000000000000000000000000000000000000
.......G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-GA----ATTCTTGAC----------ACATTGCT................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................A----ATTCTTGAC----------ACATTGCTCAACAGG.........................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................A----ATTCTTGAC----------ACATTGCTCA..............................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.....CAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-GA----ATTCTTGAC----------ACATTGCTC...............................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GA-GA----ATTCTTGAC----------ACATTGCTCAACA...........................................................2611.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................ATTCTTGAC----------ACATTGCTCAACAGGT-------------...........................................2511.001000000000000001000000000000000000000000000000000000000000000000
droMoj3
TATACAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAGCAG------------------AGA-GA----ATTCTTGACACT----------TTGCTCAACAAGTTTTTTCTTTGTGTTTTTTGCTGGGCGTAAATGAAG----------------AACATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..TACAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAGCAG------------------AGA-GA----ATTCT......................................................................................2614.004400000
.........................................................................................................................................................................................................................................................................TTCTTGACACT----------TTGCTCAACAAGTTTT.....................................................2711.001100000
................................................................................................................................................................................................................................................................................................................CTTTGTGTTTTTTGCTGGGC...............................2011.001100000
..........................................................................................................................................................................................................................................................................................................................TTTGCTGGGCGTAAATGAAG----------------.....2011.001000001
..........................................................................................................................................................................................................................................................................................................................TTTGCTGGGCGTAAATGAAG----------------AAC..2311.001000001
........A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAGCAG------------------AGA-GA----ATTCTTGACA.................................................................................2511.001100000
..............................................................................................................................................................................................................................................................................................................TTCTTTGTGTTTTTTGCTGGGC...............................2211.001100000
....................................................................................................................................................................................................................................................................................................................GTGTTTTTTGCTGGGCGTAAATGAAG----------------A....2711.001000001
...............................................................................................................................................................................................................................................................GA-GA----ATTCTTGACACT----------TTG..................................................................1911.001100000
...................................................................................................................................................................................................................................TAGAAGCAG------------------AGA-GA----ATTCTTGACACT----------.....................................................................2611.001100000
..............................................................................................................................................................................................................................................................................................TTGCTCAACAAGTTTTTTCT.................................................2011.001100000
.....................................................................................................................................................................................................................................GAAGCAG------------------AGA-GA----ATTCTTGACAC................................................................................2311.001100000
....................................................................................................................................................................................................................................................................................................................GTGTTTTTTGCTGGGCGTAAAT.........................2211.001000001
..............................................................................................................................................................................................................................................................................................TTGCTCAACAAGTTTTTTCTTTGTGTTT.........................................2811.001100000
....................................................................................................................................................................................................................................................................................................................GTGTTTTTTGCTGGGCGTA............................1911.001000001
...........................................................................................................................................................................................................................................................................................................................TTGCTGGGCGTAAATGAAG----------------A....2011.001000001
..........................................................................................................................................................................................................................................................................TCTTGACACT----------TTGCTCAACA...........................................................2011.001100000
...........................................................................................................................................................................................................................................................................................................................TTGCTGGGCGTAAATGAAG----------------.....1911.001000001
........................................................................................................................................................................................................................................................................................................................TTTTTGCTGGGCGTAAATGAAG----------------.....2211.001000001
.ATACAAAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGAAGCAG------------------AGA-.................................................................................................2011.001100000
droGri2
AGAAGCAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-AA----ATTCTTGAC----------ACATTGCTCAACAAGT-------------TTTTTGCTGGGCGTAAATAATA-AAAATT---------GAAAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.......G------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGA-AA----ATTCTTGAC----------ACATTG..................................................................2111.00110
..........................................................................................................................................................................................................................................................................................................................TTTGCTGGGCGTAAATAATA-....................2011.00110
......................................................................................................................................................................................................................................................................................................CAAGT-------------TTTTTGCTGGGCGTA............................2011.00110

Generated: 05/18/2015 at 12:42 PM