ID:

dsi_9866

 Coordinate:

2r:1323204-1323353 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.4 -8.3 -8.3

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_11361  2l:22493944-22493973 -
  2. dsi_9866  2r:1323291-1323320 -
star
  1. dsi_11361  2l:22493882-22493908 -
  2. dsi_9866  2r:1323229-1323255 -

Sense Strand Reads

TACAGATATTTACTAACATCTTTATTTACAAATATCCATTAAAATGTGTGGTAAGTATTTGAGCACAAATATTTTTTTTCGACTTAGCAGTAAAAGTTTAGACAAATTGGGAACATCTGTTTTTTTCCTCAAGTTATTGATTAATTTCCGTGCTTAACGTTTGATTTTGTCGGCGCACAAAGACTTTTATAAATTTTAAAATGCCGGCATATGGGGCCCGTCCTATTAAGGTTTATATTAAATCTCGCGC
***********************************************************************************.................((((((..(((((...........))))).((((((.....)))))).(((.....)))......))))))....*************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M053
female body
 M024
male body		 M025
embryo
 O002
Head
 GSM343915
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR1275485
Male prepupae
.............................................GTGTTGTAAGTGGTTGAGCA......................................................................................................................................................................................... 20 3 7 158.00 1106 784 60 30 15 98 76 15 25 0 1 0 0 1 1
..........................................AAGGTGTTGTAAGTGTTTGAGC.......................................................................................................................................................................................... 22 3 4 17.25 69 0 7 36 21 0 0 5 0 0 0 0 0 0 0
..........................................AATGTGTTGTAAGTGGTTGAGC.......................................................................................................................................................................................... 22 3 3 10.33 31 0 19 1 9 0 0 0 1 1 0 0 0 0 0
...........................................AGGTGTTGTAAGTGTTTGAGC.......................................................................................................................................................................................... 21 3 5 9.00 45 0 14 12 13 0 0 5 1 0 0 0 0 0 0
................................................................................................................................TCTAGTTAGTGATTAATT........................................................................................................ 18 2 15 7.33 110 0 2 74 0 0 0 34 0 0 0 0 0 0 0
..........................................AAGGTGTTGTAAGTAGTTGAGC.......................................................................................................................................................................................... 22 3 3 6.67 20 0 15 1 1 0 1 2 0 0 0 0 0 0 0
...........................................AGGTGTTGTAAGTAGTTGAGC.......................................................................................................................................................................................... 21 3 3 4.33 13 0 6 5 1 0 0 0 0 0 0 1 0 0 0
.............................................GTGTTGTAAGTAGTTGAGC.......................................................................................................................................................................................... 19 2 2 3.00 6 0 1 1 1 0 1 2 0 0 0 0 0 0 0
............................................GGTGTTGTAAGTAGTTGAGC.......................................................................................................................................................................................... 20 3 4 3.00 12 0 6 4 2 0 0 0 0 0 0 0 0 0 0
.............................................GTGTTGTAAGTGGTTGAGCAC........................................................................................................................................................................................ 21 3 3 2.67 8 6 0 0 0 2 0 0 0 0 0 0 0 0 0
..........................................AAGGTGTTGTAAGTGTTTGAGCA......................................................................................................................................................................................... 23 3 2 2.50 5 0 0 3 1 0 0 1 0 0 0 0 0 0 0
.............................................GTGTTGTAAGTGTTTGAGC.......................................................................................................................................................................................... 19 2 4 1.75 7 0 1 3 1 0 1 0 1 0 0 0 0 0 0
................................................................................................................................TCTAGTTAGTGATTAATTACC..................................................................................................... 21 3 5 1.40 7 0 0 5 0 0 0 2 0 0 0 0 0 0 0
............................................GGTGTTGTAAGTGTTTGAGC.......................................................................................................................................................................................... 20 3 11 1.09 12 0 4 2 3 0 2 0 1 0 0 0 0 0 0
..........................................AAGGTGTTGTAAGTAGTTGAGCA......................................................................................................................................................................................... 23 3 2 1.00 2 0 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................TTAGCAGTAAAAGTTTAGACAAATTGGGAA......................................................................................................................................... 30 0 2 1.00 2 0 0 0 0 0 0 0 0 0 2 0 0 0 0
....................................................................................................................................................CGTGCTTAACGTTTGATTTTGTCGGCG........................................................................... 27 0 2 1.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
............................................TGTGTGGTAAGTATTTGAGCACAAA..................................................................................................................................................................................... 25 0 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0 0 0
..........................................AATGTGTTGTAAGTGGTTGAG........................................................................................................................................................................................... 21 3 5 0.80 4 0 4 0 0 0 0 0 0 0 0 0 0 0 0
..........................................AAGGTGTTGTAAGTAGTTGAG........................................................................................................................................................................................... 21 3 4 0.75 3 0 3 0 0 0 0 0 0 0 0 0 0 0 0
...........................................ATGTGTTGTAAGTGGTTGAGCA......................................................................................................................................................................................... 22 3 3 0.67 2 0 0 1 0 0 0 1 0 0 0 0 0 0 0
..............................................TGTTGTAAGTGTTTGAGCA......................................................................................................................................................................................... 19 2 3 0.67 2 0 0 0 2 0 0 0 0 0 0 0 0 0 0
.................................................................................................TTAGACAAATTGGGAACATCTGTT................................................................................................................................. 24 0 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................TAAAAGTTTAGACAAATTGGGAACATCTG................................................................................................................................... 29 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
.....................................................................................AGCAGTAAAAGTTTAGACAAATTGGGAA......................................................................................................................................... 28 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................GTTTGATTTCGACGGCGCACAAAGACT................................................................. 27 2 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..........................................AATGTGTTGTAAGTGTTTGAGC.......................................................................................................................................................................................... 22 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................TTTCCGTGTTTAACGTTTGATTTCGA................................................................................ 26 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
..............................................TGTTGTAAGTGGTTGAGCAC........................................................................................................................................................................................ 20 3 8 0.50 4 4 0 0 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................TTTTATAAATTTTAAAATGCCGGCATA....................................... 27 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................TGTTTAACGTTTGATTTCGACGGC............................................................................ 24 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................TCCTATTAAGGTTTATATTAAATCTCGCGC 30 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................AGGTGTTGTAAGTAGTTGAGCA......................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................TAACGTTTGATTTTGTCGGC............................................................................ 20 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.........................................................TTTGAGCACAAATATTTTTTTTCGACTT..................................................................................................................................................................... 28 0 2 0.50 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................CCTCTAGTTAGTGATTAAT......................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
...........................................AGGTGTTGTAAGTGTTTGAGCA......................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................ATTTTTTTTCGACTTAGCAGT............................................................................................................................................................... 21 0 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................AGTTTAGACAAATTGGGAACATCTG................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
...................................................................................TTAGCAGTAAAAGTTTAGACAAATTGGGA.......................................................................................................................................... 29 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................TTGATTTTGTCGGCGCACAA...................................................................... 20 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.............................................GTGTCGTAAGTGGTTGAGC.......................................................................................................................................................................................... 19 3 11 0.36 4 0 2 1 0 0 1 0 0 0 0 0 0 0 0
............................................TGTGTTGTAAGTGGTTGAGCA......................................................................................................................................................................................... 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................AAGGTGTGGTAAGTGGTTGAGC.......................................................................................................................................................................................... 22 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
..........................................AAGGTGTTGTAAGTCTTTGAGC.......................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
..........................................AAGGTGTCGTAAGTGTTTGAGC.......................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................GTTGTAAGTGTTTGAGCA......................................................................................................................................................................................... 18 2 6 0.33 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
....AATATTTACTAACATCTTT................................................................................................................................................................................................................................... 19 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
..............................................TGTTGTAAGTAGTTGAGC.......................................................................................................................................................................................... 18 2 7 0.29 2 0 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................ATGTGTTGTAAGTGCTTGAGC.......................................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
.............................................GTGTTGTAAGTCGTTGAGC.......................................................................................................................................................................................... 19 3 17 0.24 4 0 0 3 1 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................TTAAACTGCCGGCATCTGTG................................... 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................AAGGTGTTGTAAGTGTTTGAG........................................................................................................................................................................................... 21 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0
.........................................TAATGTGTTGTGAGTATTTGA............................................................................................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................AATGGGATCATCTGTTTTTTC............................................................................................................................ 21 3 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................TCTAGTTAGTGATTAATTAC...................................................................................................... 20 3 14 0.14 2 0 0 2 0 0 0 0 0 0 0 0 0 0 0
...............................................GTGGTAAGTGGTTGAGCA......................................................................................................................................................................................... 18 2 7 0.14 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0
...................................CCCTTAAAATGAGTGGT...................................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................GTGTTGTAAGTTGTTGAGCA......................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................TTAAACTGCCGGCAT........................................ 15 1 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
..........................................AATGTGTTGTAAGTGGTTGA............................................................................................................................................................................................ 20 3 17 0.06 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................ATGATTAGACACATTGGGA.......................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1 0 0
.................................................GGTAAGTGGTTGAGCA......................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0
.............................................GTGTAGTAAGTGGTTGAGC.......................................................................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................GGGAACATCGGCTTTTT............................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0
......................................GTAAAATGTGTGGTA..................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

ATGTCTATAAATGATTGTAGAAATAAATGTTTATAGGTAATTTTACACACCATTCATAAACTCGTGTTTATAAAAAAAAGCTGAATCGTCATTTTCAAATCTGTTTAACCCTTGTAGACAAAAAAAGGAGTTCAATAACTAATTAAAGGCACGAATTGCAAACTAAAACAGCCGCGTGTTTCTGAAAATATTTAAAATTTTACGGCCGTATACCCCGGGCAGGATAATTCCAAATATAATTTAGAGCGCG
***************************************************************************.................((((((..(((((...........))))).((((((.....)))))).(((.....)))......))))))....*********************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR902009
testis
......................................................................................................................................................................AAAAGCCGCGTCTTTCTGAATA.............................................................. 22 3 2 1.00 2 1 0 1 0 0 0 0 0
.........................................................................................................................................................................AGCCGCGTCTTTCTGAATA.............................................................. 19 2 3 0.67 2 2 0 0 0 0 0 0 0
..........................................................................................................................................................................................................CGGCCGTATACCCCGGGCAGGATAATT..................... 27 0 2 0.50 1 0 1 0 0 0 0 0 0
......................................................................................................................CAAAAAAAGGAGGCGAATAACTA............................................................................................................. 23 3 4 0.50 2 0 0 0 2 0 0 0 0
.......................................................................................................................................................................AAAGCCGCGTCTTTCTGAATA.............................................................. 21 3 4 0.50 2 2 0 0 0 0 0 0 0
.......................................................................AAAAAAAAGCTGAATAGT................................................................................................................................................................. 18 1 2 0.50 1 1 0 0 0 0 0 0 0
........................AAATGTTTATAGGTAATTTTACACAC........................................................................................................................................................................................................ 26 0 2 0.50 1 0 1 0 0 0 0 0 0
.......................................................................................................................................................................AAAGCCGCGTCTTTCTGAA................................................................ 19 2 3 0.33 1 1 0 0 0 0 0 0 0
......................................................................................................................................................................AAAAGCCGCGTCTTTCTGA................................................................. 19 2 3 0.33 1 1 0 0 0 0 0 0 0
.......................................................................AAAAAAAAACTGAGTCGACATTTT........................................................................................................................................................... 24 3 3 0.33 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................AGCCGCGTCTTTCTG.................................................................. 15 1 7 0.29 2 2 0 0 0 0 0 0 0
.......................................................................................................................................................................ACAGCCGCGTGTTGGTGA................................................................. 18 2 4 0.25 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................AGCCGCGTCTTTCTGAAT............................................................... 18 2 4 0.25 1 1 0 0 0 0 0 0 0
......................................................................................................................CAAAAAAAGGAGGCGAATAACT.............................................................................................................. 22 3 5 0.20 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................AAAGCCGCGTCTTTCTGAAT............................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GGGCAGGATAGTTGCA.................. 16 2 8 0.13 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................AGCCGCGTCTTTCTGAATAA............................................................. 20 3 8 0.13 1 1 0 0 0 0 0 0 0
.......................................................................AAAAAAAAGCTGAATG................................................................................................................................................................... 16 1 19 0.11 2 0 0 0 0 0 2 0 0
.......................................................................................................................AAGAAAAGGAGGCCAATAACTA............................................................................................................. 22 3 11 0.09 1 0 0 0 0 0 0 1 0
............................................................................AAAGCTGAATCGTCT............................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 1 0 0 0
.......................................................................................................................AAAAAAAGGAGGTCATTACC............................................................................................................... 20 3 15 0.07 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................TTAAGGCCGTATACCCG.................................. 17 2 17 0.06 1 0 0 0 0 1 0 0 0
......................................................CATAAATTAGTGTATATAAAAA.............................................................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 0 0 0 1
.TCTCTATAAATGATCGT........................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 0 1 0 0 0
........................................................................AAAAAAAGCTGAATG................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1 0 0
.....................................................................AAAAAAAAAAGCTGAAT.................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:1323154-1323403 - dsi_9866 TACAGATATTTACTA-ACATCTTTATTTACAAAT----------------------------------------------------------------------------------------------------------------------------------ATCCATTAAAATGTGTGGTAAGTATTTGAGCACAAATATTTTTTTTCGACTTAGCAGTAAAAGTTTA-GACAAATTGGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTTTTTT-----TCCTCAAGTTATTGATT-A--------------------------ATT----TCCGTGCTTAACG-----------------------------TTTGATTTTGTCGGCGCACAAAGA-------------CTTTTATAAATTTTAAAATGCCGGCATATGGGGCCCGTC---CTATTAAGGTTTATATTAAATCTCGC--GC
droSec2 scaffold_6:104625-104879 + TACAGATATTTACAA-ACATCTTTATTTATCCAT----CT----------------------------------------------------------------------------------------------------------------------TTAAATATCCATTAAAATGTGTGGTAAGTATTTGAGCACAAATATTTTTTTTCGACTTAGTTTTACAAATTTG-GACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTTTTTTTTTTTTCCTCAAGTTAT-----------------------------------T----TCCGTGTTTAACG-----------------------------TTTGATTTCGACGGCGCACAAAGA-------------CTTTTATAAATGTTAAAATGCCGGCATATGGGGCCCGTC---CTATTAAGGTTTATATTAAATCTCGC--GC
dm3 chr3RHet:2476643-2476894 + TACAGATATTTACTA-ACATCTTTAATTACAAAT----------------------------------------------------------------------------------------------------------------------------------ATCTATAAAAATGTGTGGTAAGTACTAAAGCAAAAATATTTTTTTCCGACTTAGCAGTAAAAGTTTGAGACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTTTTTC-----TCCTCAAGTTATTGAAT-A--------------------------ATTG---TCTTCTTTTAAAG-----------------------------TTTGATTCCGACGGCGCACAGAGA-------------CATTTATAAACTTTAATATGCCGGCATATGGGGCACGTC---CTATTAAGGTTTATATTAAATCTCGC--GC
droEre2 scaffold_4929:2761767-2761939 + AGAAATCAAAC---G-AATTTTATTTTTACAAAT----------------------------------------------------------------------------------------------------------------------------------TTCAACC-----------------------------------------------------------------AATAAAATAAGCATAATTAATTGATGGCCCATCAAATCGGCAAATATGCAATGTAAATACATACAA------------------------------------------------------------TTTATTAATGGA----AAATATTTTGT-----GCTTCAAGCCATTTGAT-------------------------------------------TGAAT-----------------------------TTTAATATTAGCG-CCCACAA---------------------------------------------------------------------------------A--GATT
droYak3 v2_chrUn_002:436239-436430 - TTCCGATGTAC-TATCCGTCTACCTCTAACAAAC----------------------------CTCCTTGGTTTAATAAGAGTTGACACATCTAAGAAATGTTAAGTCCAGACTTTATATAAAATTTAAAAATACCGGTTCTCAATCTATATTTTCTAA------ATATGTAAGT------GCTCGGTTAAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----ACCGTGCTTAACG-----------------------------CTCAGT----------------GT------TAAAAGAATTAT------------------------------------------------------------T--TAAA
droEug1 scf7180000409509:673001-673080 - CCAAGATCTC-------------CTTTTAAAAAT----------------------------------------------------------------------------------------------------------------------------------ATTCTTTAAAATGTGTAA--AATATTTAAGTAAT---------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------AATATCCTTAACAAAAATA------------------------------------------------------------------------------------------------TA------------------------------------------------------------G--AAAA
droBia1 scf7180000301495:244915-245028 + TCAGGACATAAAATT-GTATTTTAGTT----AGT----------------------------------------------------------------------------------------------------------------------------------CTTGAGAAATTTGTATATTAAGAACG---------------------------------------CC-AACGAGT----------------------------------------------------------------------------------------------------------------------ATCA------------------------------------------------------------------------------------------------AACACATTTCTTTTTGAAT---------------------GCACTTGCAG----TTTGAACTAA-------AG------------------------------------------------------------T--AGGA
droTak1 scf7180000415700:462878-463078 - TAAAAATCTGTAGTA-ACTTCATTTCTTCTTAGC----------------------------------------------------------------------------------------------------------------------------------ATTTATGCTT-CTTATATTAAGCTTAAAAAATCAGATAATTTTTTTTTATATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAT----------------------------------------------------GTTTGGTTCGTCAATAATCTTGGTTTAAAGTCTAAT----------------AT------T------CTACTCAAAATTCTAAAATTATATGTTTTAGGGCTGATTAAACTCTCGAAATTTTTGTGAAACAAT--GTAC
droEle1 scf7180000491024:171608-171714 + TATAAATATTAATTT-ATGTTTTTATTTACAGGT----------------------------------------------------------------------------------------------------------------------------------CAATAAAAAAATACGAAATATATATATGAAG--TAATTT-TTATACACATATAACACATTAAACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG---------------------------------------------------------AAA--ATGG
droRho1 scf7180000777889:5356-5564 + TAATGCTTTAA-TAA-ATTTCTATACTTAAGAATATAATACTGAATGACATTTTAAATTGCAATTTTTAATTTATTAAAGTTTTTT----------------------------------------------------------------------------------------------------------------------------TTATTT--------------A-GGAAAGTTTGGATT---------------------------------------TTTTTAGGTATGTACTAATTTTCTTTATTA---------------------------------------------------------------------------------CA--------TAAAT-G--------------------------ATTA---TTTTCTTTTAAAGTTCAGTTCGTTGACAAT---------------------GTTTGTGCAAAAATT-------------TGTGAAAAAATG-----------------------------------------------------T--TAAA
droFic1 scf7180000453305:17033-17110 + ATGATTTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTG---ATCAGTGAAA--------------------------------------------------------------------------------------------------------------------------------------AAAAAACCGACTGAAGACATCTATTTTAG-----TTTAGAAGTTATTAATT-A--------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------T--GCCG
droKik1 scf7180000302398:50245-50411 - TATTTTTTTTTATTT-ATTTATTTATTTATTTAT----------------------------------------------------------------------------------------------------------------------------TTAGTTAT---------------------------TTATTATTATTTTTTTTTTATTTATTT------------------------------------------------------------------ATTTAGTTATTTATTATTTTTTTTTTTTATTTATTTATTGAGTTATTTATTTTTTTTTTGTGTAATCGATTGGCACAAAATGGGCGTAATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC--GTAA
droAna3 scaffold_13417:3391305-3391379 - AAGTATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACACAAATAACTGTTTCCGAATTGATTTCAAAAATATT-AACGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTAGGAGCTTTT-----------------------------------------A--TTTT
droBip1 scf7180000396450:5448-5578 - AAGTGCCTTAG-TAT-ATATTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------------------------------------------TTTA-GATTTACTTTGAAAA-----------------------------------------------------------------------------------------------------------------------------------TTTTAT-TTTT-----TCTTAGATTTTTA-AGTGG--------------------------ACT----GTAGTTTTTAAAT-----------------------------TTTAGTTTTACTGAGGGCTAATGT-------------TTTTTTTTAAT------------------------------------------------------T--TTAA
dp5 Unknown_group_286:19491-19562 - CAGACTTTTGT---A-GCATATTTATTTATGTAA----------------------------------------------------------------------------------------------------------------------------------ATACATAAATATGTGTATAAATAAATTTAGTTCAAATGCTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_139:107472-107544 - TTATTTACGA----------------------AT----------------------------------------------------------------------------------------------------------------------------------ATTTATTTGTATCGGCTGTAAGTTAAATTTCACAGTTATTATTTTTAAACGTAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--AAAA
droWil2 scf2_1100000004909:5761444-5761576 + TATATATATTTATAT-ATATGTATATATATATAT----------------------------------------------------------------------------------------------------------------------------ATAAATGGCGCTCAAACTTATTGGTAAA---------------------------------------A-------------------------------------------------------AAAAAATTAAATTGTTT-------------------------------------------------------------------------------------------------------------------AACAATTACAAAAAACATTTAGATGAATT----GAAGTTTT------------------------------------------TTCTT-CGTTTGT---------------------------------------------------------------------------------T--GGTT
droVir3 scaffold_12822:3522642-3522733 - ACAATTATTG-------------TTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTGTA-TTTCG--------------------------ATTGTTTTTTGTACATTTTG-----------------------------TTTGTTGCTGTTGGCGCATAAATA-------------TTAATTAAAGTTG----------------------------------------------------G--AAAA
droMoj3 scaffold_6500:30507417-30507493 - ATTTTCAATA------------------ATAAAT----------------------------------------------------------------------------------------------------------------------------------ATTTATTAAAATACCTGATCTACGTCACAGCAAAATTTTTTTTCCTCAGCTTGA-AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--AAAA
droGri2 scaffold_14853:1915175-1915245 + AGATAAAGTTGAAAA-CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTTTTTT-----TGTTTAAATTATTTATT-T--------------------------GTG----TTTTTGCTTTTCT-----------------------------TGTG--------------------------------------------------------------------------------------------------A--GTTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TACAGATATTTACTA-ACATCTTTATTTACAAAT----------------------------------------------------------------------------------------------------------------------------------ATCCATTAAAATGTGTGGTAAGTATTTGAGCACAAATATTTTTTTTCGACTTAGCAGTAAAAGTTTA-GACAAATTGGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTTTTTT-----TCCTCAAGTTATTGATT-A--------------------------ATT----TCCGTGCTTAACG-----------------------------TTTGATTTTGTCGGCGCACAAAGA-------------CTTTTATAAATTTTAAAATGCCGGCATATGGGGCCCGTC---CTATTAAGGTTTATATTAAATCTCGC--GCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................TTAGCAGTAAAAGTTTA-GACAAATTGGGAA................................................................................................................................................................................................................................................................................................................................................................3021.00200000000200000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCTTAACG-----------------------------TTTGATTTTGTCGGCG.............................................................................................2721.00200200000000000000
...............................................................................................................................................................................TGTGTGGTAAGTATTTGAGCACAAA.............................................................................................................................................................................................................................................................................................................................................................................................................2521.00200000000002000000
....................................................................................................................................................................................................................................TTA-GACAAATTGGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTT....................................................................................................................................................................................................................2420.50100000000100000000
.............................................................................................................................................................................................................................TAAAAGTTTA-GACAAATTGGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTG......................................................................................................................................................................................................................2920.50100000010000000000
........................................................................................................................................................................................................................AGCAGTAAAAGTTTA-GACAAATTGGGAA................................................................................................................................................................................................................................................................................................................................................................2820.50100000010000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTATAAATTTTAAAATGCCGGCATA............................................2720.50100000000000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC---CTATTAAGGTTTATATTAAATCTCGC--GC3020.50100000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACG-----------------------------TTTGATTTTGTCGGC..............................................................................................2020.50101000000000000000
............................................................................................................................................................................................TTTGAGCACAAATATTTTTTTTCGACTT.............................................................................................................................................................................................................................................................................................................................................................................................2820.50100000000010000000
.........................................................................................................................................................................................................ATTTTTTTTCGACTTAGCAGT.......................................................................................................................................................................................................................................................................................................................................................................................2120.50101000000000000000
.................................................................................................................................................................................................................................AGTTTA-GACAAATTGGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTG......................................................................................................................................................................................................................2520.50100000010000000000
......................................................................................................................................................................................................................TTAGCAGTAAAAGTTTA-GACAAATTGGGA.................................................................................................................................................................................................................................................................................................................................................................2920.50100000010000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATTTTGTCGGCGCACAA........................................................................................2020.50100010000000000000
droSec2
TACAGATATTTACAA-ACATCTTTATTTATCCAT----CT----------------------------------------------------------------------------------------------------------------------TTAAATATCCATTAAAATGTGTGGTAAGTATTTGAGCACAAATATTTTTTTTCGACTTAGTTTTACAAATTTG-GACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTTTTTTTTTTTTCCTCAAGTTAT-----------------------------------T----TCCGTGTTTAACG-----------------------------TTTGATTTCGACGGCGCACAAAGA-------------CTTTTATAAATGTTAAAATGCCGGCATATGGGGCCCGTC---CTATTAAGGTTTATATTAAATCTCGC--GCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................AATTTG-GACAAATTTGGT.................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.......ATTTACAA-ACATCTTTATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
dm3
TACAGATATTTACTA-ACATCTTTAATTACAAAT----------------------------------------------------------------------------------------------------------------------------------ATCTATAAAAATGTGTGGTAAGTACTAAAGCAAAAATATTTTTTTCCGACTTAGCAGTAAAAGTTTGAGACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTTTTTC-----TCCTCAAGTTATTGAAT-A--------------------------ATTG---TCTTCTTTTAAAG-----------------------------TTTGATTCCGACGGCGCACAGAGA-------------CATTTATAAACTTTAATATGCCGGCATATGGGGCACGTC---CTATTAAGGTTTATATTAAATCTCGC--GCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................GACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTT....................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................ATAAAAATGTGTGGTAAGTACTAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................TTGAGACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGT.....................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGCACGTC---CTATTAAGGT....................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........TACTA-ACATCTTTAATTACAAAT----------------------------------------------------------------------------------------------------------------------------------ATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................TTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTTTTTC-----TCCTCAAG...................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATATGCCGGCATATGGG........................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
...............................................................................................................................................................................TGTGTGGTAAGTACTAAAGCAAAAATA...........................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................T----------------------------------------------------------------------------------------------------------------------------------ATCTATAAAAATGTGTGGTAAGTAC........................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAATATGCCGGCATATGGGGC......................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGGCATATGGGGCACGTC---..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................CAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGTTTTTC-----TCC........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TAATTACAAAT----------------------------------------------------------------------------------------------------------------------------------ATCTATAAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TTTACTA-ACATCTTTAATTACAAAT----------------------------------------------------------------------------------------------------------------------------------A................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................TTTCCGACTTAGCAGTAAAAGT.................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AAATGTGTGGTAAGTACTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGCCGGCATATGGGGCA.....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................TCTATAAAAATGTGTGGTAAGTACTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TAAAAGTTTGAGACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------A..........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................CAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGT.....................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAG-----------------------------TTTGATTCCGACGG...............................................................................................2011.0010000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TC-----TCCTCAAGTTATTGAAT-A--------------------------ATTG---TCTTC..................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AATATTTTTTTCCGACTTAGCAGT.......................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TTTTTTTCCGACTTAGCAGTAAAAG..................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCGGCATATGGGGCACGTC---..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......TATTTACTA-ACATCTTTAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TTTGAGACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCTGT.....................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAAAG-----------------------------TTTGATTCCGACGGC..............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AAAAATGTGTGGTAAGTACTA......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................TGTGTGGTAAGTACTAAAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATGCCGGCATATGGGGCACGT..................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATATGCCGGCATATGGGGCA.....................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGGCACGTC---CTATTAAGGTTTATAT..............2711.0010000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................AAAAATGTGTGGTAAGTAC........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................TGAGACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATC........................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGCCGGCATATGGGGCA.....................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................TATAAAAATGTGTGGTAAGTACTAAAGC..................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GAGACAAATTTGGAAC------------------------------------------------------------------------------------------------------------------------------------ATCT.......................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAG-----------------------------TTTGATTCCGACTT...............................................................................................18140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGAAATCAAAC---G-AATTTTATTTTTACAAAT----------------------------------------------------------------------------------------------------------------------------------TTCAACC-----------------------------------------------------------------AATAAAATAAGCATAATTAATTGATGGCCCATCAAATCGGCAAATATGCAATGTAAATACATACAA------------------------------------------------------------TTTATTAATGGA----AAATATTTTGT-----GCTTCAAGCCATTTGAT-------------------------------------------TGAAT-----------------------------TTTAATATTAGCG-CCCACAA---------------------------------------------------------------------------------A--GATTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TTCCGATGTAC-TATCCGTCTACCTCTAACAAAC----------------------------CTCCTTGGTTTAATAAGAGTTGACACATCTAAGAAATGTTAAGTCCAGACTTTATATAAAATTTAAAAATACCGGTTCTCAATCTATATTTTCTAA------ATATGTAAGT------GCTCGGTTAAATTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T----ACCGTGCTTAACG-----------------------------CTCAGT----------------GT------TAAAAGAATTAT------------------------------------------------------------T--TAAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................TCAATCTATATTTTCTAA------ATATGTAAG........................................................................................................................................................................................................................................................................................................................................................................................................................................27200.15303000000000
........................TCTAACAAAC----------------------------CTCCTTGGTTTA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
......TGTAC-TATCCGTCTACCTCTAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
........TAC-TATCCGTCTACCTCTAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
droEug1
CCAAGATCTC-------------CTTTTAAAAAT----------------------------------------------------------------------------------------------------------------------------------ATTCTTTAAAATGTGTAA--AATATTTAAGTAAT---------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------------------------------AATATCCTTAACAAAAATA------------------------------------------------------------------------------------------------TA------------------------------------------------------------G--AAAASizeHit CountTotal NormTotal
No Reads
droBia1
TCAGGACATAAAATT-GTATTTTAGTT----AGT----------------------------------------------------------------------------------------------------------------------------------CTTGAGAAATTTGTATATTAAGAACG---------------------------------------CC-AACGAGT----------------------------------------------------------------------------------------------------------------------ATCA------------------------------------------------------------------------------------------------AACACATTTCTTTTTGAAT---------------------GCACTTGCAG----TTTGAACTAA-------AG------------------------------------------------------------T--AGGASizeHit CountTotal NormTotal
No Reads
droTak1
TAAAAATCTGTAGTA-ACTTCATTTCTTCTTAGC----------------------------------------------------------------------------------------------------------------------------------ATTTATGCTT-CTTATATTAAGCTTAAAAAATCAGATAATTTTTTTTTATATAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTAT----------------------------------------------------GTTTGGTTCGTCAATAATCTTGGTTTAAAGTCTAAT----------------AT------T------CTACTCAAAATTCTAAAATTATATGTTTTAGGGCTGATTAAACTCTCGAAATTTTTGTGAAACAAT--GTACSizeHit CountTotal NormTotal
No Reads
droEle1
TATAAATATTAATTT-ATGTTTTTATTTACAGGT----------------------------------------------------------------------------------------------------------------------------------CAATAAAAAAATACGAAATATATATATGAAG--TAATTT-TTATACACATATAACACATTAAACTTA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAG---------------------------------------------------------AAA--ATGGSizeHit CountTotal NormTotal
No Reads
droRho1
TAATGCTTTAA-TAA-ATTTCTATACTTAAGAATATAATACTGAATGACATTTTAAATTGCAATTTTTAATTTATTAAAGTTTTTT----------------------------------------------------------------------------------------------------------------------------TTATTT--------------A-GGAAAGTTTGGATT---------------------------------------TTTTTAGGTATGTACTAATTTTCTTTATTA---------------------------------------------------------------------------------CA--------TAAAT-G--------------------------ATTA---TTTTCTTTTAAAGTTCAGTTCGTTGACAAT---------------------GTTTGTGCAAAAATT-------------TGTGAAAAAATG-----------------------------------------------------T--TAAASizeHit CountTotal NormTotal
No Reads
droFic1
ATGATTTTTC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTG---ATCAGTGAAA--------------------------------------------------------------------------------------------------------------------------------------AAAAAACCGACTGAAGACATCTATTTTAG-----TTTAGAAGTTATTAATT-A--------------------------AA-----------------------------------------------------------------------------------------------------------------------------------------------------T--GCCGSizeHit CountTotal NormTotal
No Reads
droKik1
TATTTTTTTTTATTT-ATTTATTTATTTATTTAT----------------------------------------------------------------------------------------------------------------------------TTAGTTAT---------------------------TTATTATTATTTTTTTTTTATTTATTT------------------------------------------------------------------ATTTAGTTATTTATTATTTTTTTTTTTTATTTATTTATTGAGTTATTTATTTTTTTTTTGTGTAATCGATTGGCACAAAATGGGCGTAATGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATC--GTAASizeHit CountTotal NormTotal
No Reads
droAna3
AAGTATTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAACACAAATAACTGTTTCCGAATTGATTTCAAAAATATT-AACGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTCTAGGAGCTTTT-----------------------------------------A--TTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
AAGTGCCTTAG-TAT-ATATTTTTTTTT------------------------------------------------------------------------------------------------------------------------------------------------------AT-----------------------------------------------TTTA-GATTTACTTTGAAAA-----------------------------------------------------------------------------------------------------------------------------------TTTTAT-TTTT-----TCTTAGATTTTTA-AGTGG--------------------------ACT----GTAGTTTTTAAAT-----------------------------TTTAGTTTTACTGAGGGCTAATGT-------------TTTTTTTTAAT------------------------------------------------------T--TTAASizeHit CountTotal NormTotal
No Reads
dp5
CAGACTTTTGT---A-GCATATTTATTTATGTAA----------------------------------------------------------------------------------------------------------------------------------ATACATAAATATGTGTATAAATAAATTTAGTTCAAATGCTCT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TTATTTACGA----------------------AT----------------------------------------------------------------------------------------------------------------------------------ATTTATTTGTATCGGCTGTAAGTTAAATTTCACAGTTATTATTTTTAAACGTAACA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G--AAAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TATATATATTTATAT-ATATGTATATATATATAT----------------------------------------------------------------------------------------------------------------------------ATAAATGGCGCTCAAACTTATTGGTAAA---------------------------------------A-------------------------------------------------------AAAAAATTAAATTGTTT-------------------------------------------------------------------------------------------------------------------AACAATTACAAAAAACATTTAGATGAATT----GAAGTTTT------------------------------------------TTCTT-CGTTTGT---------------------------------------------------------------------------------T--GGTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
ACAATTATTG-------------TTTTTTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGTTGTA-TTTCG--------------------------ATTGTTTTTTGTACATTTTG-----------------------------TTTGTTGCTGTTGGCGCATAAATA-------------TTAATTAAAGTTG----------------------------------------------------G--AAAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGCATAAATA-------------TTAATTAAAGTTG----------------------------------------------------G--AA..2711.001000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGTTGGCGCATAAAT......................................................................................1811.001000000000000000000000000000000000000001000000000000000000000000
droMoj3
ATTTTCAATA------------------ATAAAT----------------------------------------------------------------------------------------------------------------------------------ATTTATTAAAATACCTGATCTACGTCACAGCAAAATTTTTTTTCCTCAGCTTGA-AG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T--AAAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
AGATAAAGTTGAAAA-CC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCTTTTTTTT-----TGTTTAAATTATTTATT-T--------------------------GTG----TTTTTGCTTTTCT-----------------------------TGTG--------------------------------------------------------------------------------------------------A--GTTTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 10:17 AM