ID:

dsi_9846

 Coordinate:

3l:1771219-1771471 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.9 -7.7 -7.7 -7.5

Flybase annnotation

five_prime_UTR [3l_1771472_1771798_-]; exon [3l_1771472_1771798_-]; five_prime_UTR [3l_1770759_1771218_-]; exon [3l_1768671_1771218_-]; intron [3l_1771219_1771471_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GGCCGATGTACGCACATGGGTGCCCAGTGTGCAATTTAAGTGCATTTTAAGTGACAGAGCTCAGTGAAATTTAAGGGAATCTCCGGCTTGAGGCGTTGCAGTGGGGCGCTGCGTTCGGTGCGGCCGCCTGGCAACCCTGAAAATGAATCATTAGAGCGAGAACGAGAACGAGAGAGTTGTGAAGAAGAAAAGAGGGAGTGCAGTCAGTTCTCAGCATACCAAAAAACGCAAACCAAAAAGACTCGCAGCGAATTTAGCGTTAATTGTGTCTAAAAAGCGCCTTTCTTCTTACTCCCCCCACAGTGTGCCCTCGGTAGCAGTGACGGCCGTCTCGAGGAACAATCAAGCCAGGA
*************************************************************************************************************************************************************************************((...............(((((((........((............))..........)))).)))............))******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M053
female body
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...........................................................................................................................................................................................................................................AAAAGACTCGCAGCGAATTTAGCGTT............................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GCCCTCGGTAGCAGTGACGGCC......................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................TTCTTACTCCCCCCACAGTGT............................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CCTCGGTAGCAGTGACGGC.......................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAACGCAAACCAAAAAGACTCG............................................................................................................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................................................................................................................................................................................................................CGGCCGTCTCGAGGAACAATCAAGC..... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................AACGCAAACCAAAAAGACTCG............................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................AAGAAGAAAAGAGGGAGT.......................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................AGCGAATTTAGCGTTAATTGTGT.................................................................................... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................ACGCAAACCAAAAAGACTCGC........................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................GACGGCCGTCTCGAGGAACAATCAAGC..... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................ATTGTGTCTAAAAAGCGCCTTTCT................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................TGTGTCTAAAAAGCGCCTT...................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................GAATTTAGCGTTAATTGTGTC................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................ATACCAAAAAACGCAAACCA...................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................AGGCGTTGCAGTGGGGCGCTGTGG............................................................................................................................................................................................................................................... 24 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................TAGCAGTGACGGCCGTCTCGA.................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................GTCTCGAGGAACAATCAA....... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................AAAAGACTCGCAGCGCAGT................................................................................................... 19 2 2 0.50 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................CGGCCTGCCAACCCTGGAA................................................................................................................................................................................................................... 19 3 17 0.35 6 0 0 0 1 0 0 0 0 0 0 5
.........................................................................................................................GACCGCCTGGTAAGCCTGAA.................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 0 0 0 0 0 1 0
............................................................................................................................................................................AGAATTGTAAAGAAGAATAGAG............................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................CGGCCTGCCAACCCTGGAAA.................................................................................................................................................................................................................. 20 3 7 0.29 2 0 0 0 0 0 1 0 0 0 0 1
..........................................................GCTCAGTGAAATTGAA....................................................................................................................................................................................................................................................................................... 16 1 14 0.29 4 0 0 0 4 0 0 0 0 0 0 0
...................................................TGACAAAGCTCAGTGATATCTA........................................................................................................................................................................................................................................................................................ 22 3 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................GGGATGTAAAGAAGAAAAGAG............................................................................................................................................................... 21 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................GCCGTCGGTGCGGCCGCCGGG.............................................................................................................................................................................................................................. 21 3 5 0.20 1 0 0 0 0 0 0 0 0 0 0 1
.........................................................TGCTCAGTGAAATTTAA....................................................................................................................................................................................................................................................................................... 17 1 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0
..........................................................GCTCAGTGAAATTGA........................................................................................................................................................................................................................................................................................ 15 1 20 0.10 2 0 0 0 1 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................................TCTGAAAAGCGCCTT...................................................................... 15 1 15 0.07 1 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................GCTGCGTCCGGTGCGCC..................................................................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

CCGGCTACATGCGTGTACCCACGGGTCACACGTTAAATTCACGTAAAATTCACTGTCTCGAGTCACTTTAAATTCCCTTAGAGGCCGAACTCCGCAACGTCACCCCGCGACGCAAGCCACGCCGGCGGACCGTTGGGACTTTTACTTAGTAATCTCGCTCTTGCTCTTGCTCTCTCAACACTTCTTCTTTTCTCCCTCACGTCAGTCAAGAGTCGTATGGTTTTTTGCGTTTGGTTTTTCTGAGCGTCGCTTAAATCGCAATTAACACAGATTTTTCGCGGAAAGAAGAATGAGGGGGGTGTCACACGGGAGCCATCGTCACTGCCGGCAGAGCTCCTTGTTAGTTCGGTCCT
********************************************************************************************((...............(((((((........((............))..........)))).)))............))************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 O002
Head
 SRR902009
testis
 O001
Testis
 SRR618934
dsim w501 ovaries
.......................................................................................................................................................................................................CGATAGTCAAGAGTCGTAT....................................................................................................................................... 19 2 1 5.00 5 3 2 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ACGATAGTCAAGAGTCGTA........................................................................................................................................ 19 2 3 4.67 14 9 2 1 1 0 0 0 1 0 0
...........................................................................................................................................................................................................AGTCAAGAGTCGTAT....................................................................................................................................... 15 0 1 3.00 3 2 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................TCGACAATTCTTCTTTTCT................................................................................................................................................................ 19 2 4 2.75 11 1 0 7 0 0 2 0 0 1 0
...............................................................................................................................................................................CGACAATTCTTCTTTTCT................................................................................................................................................................ 18 2 8 2.63 21 1 0 16 0 0 3 1 0 0 0
.......................................................................................................................................................................................................CGATAGTCAAGAGTCGTA........................................................................................................................................ 18 2 6 2.17 13 8 1 3 1 0 0 0 0 0 0
......................................................................................................................................................................................................ACGATAGTCAAGAGTCGTAT....................................................................................................................................... 20 2 1 2.00 2 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GATAGTCAAGAGTCGTAT....................................................................................................................................... 18 2 1 2.00 2 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................TAGTCAAGAGTCGTATG...................................................................................................................................... 17 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................ACGATAGTCAAGAGTCGT......................................................................................................................................... 18 2 8 1.50 12 10 2 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TAGTCAAGAGTCGTA........................................................................................................................................ 15 1 4 1.25 5 3 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................ACGATAGTCAAGAGTCGTATG...................................................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AACGATAGTCAAGAGTCGTATG...................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTCAAGAGTCGTATG...................................................................................................................................... 16 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGATAGTCAAGAGTCGTATG...................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................CGCAATTAACACAGATTTTTC............................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................TTGGCGTTTGGTTTTTCTCAGT............................................................................................................ 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................CGATAGTCAAGAGTCGTATC...................................................................................................................................... 20 3 3 1.00 3 2 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATAGTCAAGAGTCGTAT....................................................................................................................................... 17 2 8 0.63 5 2 1 0 1 1 0 0 0 0 0
........................................................................................................................................................................................................GATAGTCAAGAGTCGTA........................................................................................................................................ 17 2 20 0.45 9 9 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATAGTCAAGAGTCGTA........................................................................................................................................ 16 2 20 0.40 8 6 1 0 0 0 0 0 0 0 1
.............................................................................................................................................................................CTCGACAATTCTTCTTTTC................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................................TCAACATTTCCTCTTTTCT................................................................................................................................................................ 19 2 6 0.17 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTCAAGAGTCCTATG...................................................................................................................................... 15 1 7 0.14 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................AACGATAGTCAAGAGTCGTA........................................................................................................................................ 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................AGTCAAGAGTCGTATCT..................................................................................................................................... 17 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................GATAGTCAAGAGTCGTATC...................................................................................................................................... 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................GACAATTCTTCTTTTCTC............................................................................................................................................................... 18 2 12 0.08 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................TAGTACTTAGTAGTCTCGC................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................GTCAAGAGTCGTATT...................................................................................................................................... 15 1 13 0.08 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCAAGAGTCGTACAGTT................................................................................................................................... 17 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATATGGTTTTTTGCG............................................................................................................................ 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................TCCCGCTCTTGCTGTTGCTTT.................................................................................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................GCGATGCCGGCGGTCCGTT........................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................ACAATTCTTCTTTTC................................................................................................................................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................TCTAGAGTCGGATGGT.................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GTCAAGAGTCGTATGTC.................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................TAGTCAAGAGTCGTATGTC.................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................ATAGTCAAGAGTCGTATGT..................................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................AGTATGAGGGGGGTCT................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................CAGTAGTATGGTTTTTTGG............................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:1771169-1771521 - dsi_9846 GGCCGAT-----GTACGCACAT----GGGT---------------GCCCA------GTGTGCAA-------TTTAAGTGC---ATTTT-AAGTGA-CAGAG-CTC-----AGTGAAATTTAAGGGAATC-TCCGGCTTGA------GGCGTTGCA-GTGGGGCGCTGCGTTCG----------------------GTGCGGCCGCCTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGT------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A------------CTCGCAGCGAATTTAGCGT------------TAAT---TGTGTCTAAA-AAGCGCCTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCCCTCGGTAGCAGTGACGGCCGTCTCGA-----------------------G--GA----AC---A-------ATC-AA----GCCA--GGA
droSec2 scaffold_2:1887594-1887946 - GGGCGAT-----GTACGCACAT----GGGT---------------GCCCA------GTGTGCAA-------TTTAAGTGC---ATTTT-AAGTGA-CAGAG-CTC-----AGTGAAATTTAAGGGAATC-TCCGGCTTGA------GGCGTTGCA-GTGGGGCGCTGCGTTCG----------------------GTGCGGCCGCCTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGT------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A------------CTCGCAGCGAATTTAGCGT------------TAAT---TGTGTCTAAA-AAGCGCTTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCCCTCGGTAGCAGTGACGGCCGTCTCCA-----------------------G--GA----AC---A-------ATC-AA----GCCA--GGA
dm3 chr3L:1861627-1861979 - GGCCGAT-----GTACGCACAT----GGGT---------------GCCCA------GTGTGCAA-------TTTAAGTGC---ATTTT-AAGTGA-GAGAG-CTG-----AGTGAAATTTAAGGGAATC-TCCGGCTTGA------GGCGTTGCA-GTGGGGCGCTGCGTTCG----------------------GTGCGGCCGCCTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGT------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A------------CTCGCAAAGAATTTAGCGT------------TTAT---TGTGTCTAAA-AAGCGCCTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCTCTCGGTAGCAGTGACGGCCGTCTCGA-----------------------G--GA----AC---A-------GTC-AA----GCCA--GGA
droEre2 scaffold_4784:1849364-1849714 - GGCCGAT-----GTACGCACAT----GGGT---------------CATTA------GTGTGCAA-------TTTAAGTGC---ATT-T-AAGTGA-GAGAG-CCC-----AGTGAAATGAAAGGGAATC-TCCGGCTTGA------GACGTTGCA-GTAGGTTGCTGTGTTCG----------------------GTGCGGCCGCTTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGC------T------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAA-A-----CGC--AAACCAAAAAG-----------------------C------------CTCGCAGCGAATTTAGCGT------------TAAT---TGTGTCTAAA-AACCGCCTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCCCTCGGTAGTAGTGACGGCGGTCTCGA-----------------------G--GA----AC---A-------GCC-AA----ATCA--GGA
droYak3 3L:1814607-1814958 - GGCTGAT-----GTACGCACAT----GGGT---------------CACAA------GTGTGCAA-------TTTAAGTGC---ATAAT-AAGTGA-AAGAG-TCC-----AGTGAAATGAAAGGGAATC-TTCAGCTTGA------GGCGTTGCA-TTGGGGCGCTGCGTTCG----------------------GTGCGGCTGCCTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGC------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAA-A-----CGC--AAACCAAAAAG-----------------------A------------CTCGCAGCGAATTTAGCGT------------TAAT---TGTGTCTAAA-AACCGCCTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCTCGA-----------------------G--GA----AC---A-------GTC-AA----ATCA--GGA
droEug1 scf7180000407756:187615-187958 - AGCTGAT-----ATACACACAT----TGTGC--------------ACACA------GTGTGAAA-------GACAAGTGC---ATATA-AAGTGA-G--AA-TTA-----AGTGAAATGGAAGGGAAAT-TTAAGTTTAA------GGCGTTGCA-GAGAACCGCTGCGTTCG----------------------CCGCAGCCGCCTGGCAACTCTAAAAATGAATCATAAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGC--------------------------------------GAAG-AAAAGAGGGAGTGCA--GTTCGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A----------------CAGCGAATTTAGAGT------------TTAT---AGTGTCTAAA-AAGCGCCTTTC-TT---CTTA--CTCC--C--CTACAGTGTTCCCTCGATAACAGTGACGGCGGTCCCAA-----------------------C--GT----AC---A-------GGA-AA----ACCA--GGA
droBia1 scf7180000302428:8566557-8566938 - ATCTGAG-----GTACACACACACGCTC--CGC----GT-CCGCA-CAAGGCGTGTGTGTGACA-------CAAAAGTGC---ATTTT-AATTGA-G--AA-CGC-----AGTGATACGAAAGGGAATT-TGCCGTTTAA------GGCGTTGCA-GTGAAGCGCTGCGCCCG----------------------CTGCGACGGCCTGGCAACTCTGCAAATGAATCATAAGAGC-----------------------------------------GAGAACGAGAGC--TAGAGAGA----GAG-TTGC------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-AG-AAGC-AAAACCAAAAAG----C------------------A------------CTCGCAGCGAATTTAGAGT------------TAATC--AGTGTCTAAAGAACCGCCTTTC-TT---TTC-TACACCCCC--TTACAGTGCGCCCGCGGTAGCAGTGACGGCGGTCCCGA-----------------------A-CGT----AC---A-------GTG-AA----ACCA--GGA
droTak1 scf7180000415229:262992-263359 + CGGTGAT-----ATACATACAGACATTC--CGA----TCCCCGCA-CCAA--GTGTGTGTGACA-------AAAAAGTGA---ACTTT-AATTGA-G-GAG-CGC-----AGTGAAATGAAAGCGAAAT-TGCCGTTTAA------GGCGTTGCA-TTG--------C----G----------------------TTGCGGCGGTCTGGCAACCCTAAAAATGAATCATAAGAGC-----------------------------------------GAGAACGAGAACTAG----AGA----GAG-TTTC---GGAG------------------------AAGA--AGAAG-AAAAGAGGGAGTGC----------------------------------ATACCAAAAAAAAG-AAGCAAAAACCAAAAAA----C------------------A------------CTCGCAGCGAATTTAGAGTT-----------TAATA--AGTGTCTAAAGAGCCGCCTTTC-TT---TTC-TACTCCCCCTTTTACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCCCGA-----------------------AACGA--AAAC---A-------GTG-AA----GCCA--GGA
droEle1 scf7180000491249:3669249-3669622 + AGCTGAT-----ATACACACAT----TGTACGAAAAA---------CCCA------------AA------CAACAAGTGC---ATTTT-AATTGA-A--AA-TCA-----AGTGAAATGACTGAGAATG-GCGAGTTTAA------GGCGTTGCA-GTGA-GAGCTGAGTGGC----------------------TCGC-GCTGGCTGGCAACCCTAAAAATGAATCATAAGAGCT--------A--GA---------------------------GAGAACGAGAAC--G----AGA----GAG-TTGCTAGGGAG------------------------AAGA--AGAAG-AAAAGAGGGAGTGCA------GTTCT------------------CAGCATACCAAAAAA-----TCC-AAAACCAAAAAG-----------------------A------------CTCGCAGCGAATTTAGAGT------------TAATAATAGTGTCTAAACAATCGTCTTTC-TT---CTTA--TTCC--C--AAACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCTCAA-----------------------A--AAAAAAACGAAA-------CTC-AAAATTACCA--GGA
droRho1 scf7180000776850:54489-54842 + AGATGAT-----ACACACACAT----TATACGAAAA----------ACCA------------AC------CAACAAGTGC---ATTTT-AATTGA-A--AA-TCA-----AGTGAAATGGAAGATAAAT-GCACGTTTAA------GGCGTTGCA-GTGA-GAGCTAGGTTTC----------------------TCGCGGTCG-ATGGCAACCCTAAAAATGAATCATAAGAGCT--------A-------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGT------G------------------------AAGA--AGAAG-AAAAGAGGGAGTGCA------GTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A------------CTAGCAGCGAATTTAGAGT------------TAAT---AGTGTCTAAAAAAACGTCTTTC-TT---CTTA--TTCC--C--AAACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCTCAA-----------------------A--AA----AA---A-------CTC-AAAATTACCA--GGA
droFic1 scf7180000454113:208384-208736 + AGCTGAT-----ACACACACAT----TGTACGAAA-----------CGAA------AACTCTAA-------AGCAAGTGC---ATTTT-AATTGA-A--AA-TTC-----AGTGAAGTATTTGAGAAGTGTGATCTATGA------GACTCTGCA-GTGGGGATCTGAGTTTG----------------------GGGCGACCGCCTGGCAACTCTAAAAATGAATCATAAGAGC-----------------------------------------GAGAATAAGAACAAG----AGA----GAG-TTG---------------------------------A-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAC-----------------------A------------CTCGCAGCGAATTTAGAGT------------TATT---AGTGTCTAAA-AACCGCATTTC-TT---TCTA--CTTT--C--ATACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCTTAA-----------------------A--AAA---AC---A-------A---AA----GCGT--AGA
droKik1 scf7180000302577:365626-366014 - CCCTTTG-TTATATACACACA------AACCG---------------TCA------ATTCGTGG------CTAGGAGTGC---TTTTT-AATTAA-T--AAAAGAACAACAGTGATTCG--AGAGCATT-GCA--TTATG------GGCATTGCAAGTCT--AAATGCGTTTGTG--------------------GTGC-GCCGCCTGGTAACCCTGTAAATGAATCATAAGATAG--------A--GA---------------------------GAGAACGAGAGC--GACAGAGAGGGCGAGTTTAC------G------------------------AAGAAGCGAAG-AAAAGAGGGAGTGCAGAGTTAGTTCT------------------CAGCATACAAAAAAA-AAA-A----A------------AACTACAAACCAATCAAAAATCCGA-------TGATCTCAAAGAATTTTCCAGC-----------TAAAC--AGTGTT-------------TTCTTTACGCTTA--TCTACC---CCACAGTGCGCCCTCGGTAACACTGACCGGAGC----------------------------G--GA----AC---AGGGAACAGGAGAC----TTCT---TT
droAna3 scaffold_13337:977343-977664 + CATCGATGTT--ATACACACTT----GGCG---------------GCCCA------------CATAAACA------TTGCTATATTTT-CATTTAAG--AA-ATA-----AGCGAAACGCATTGCAAAT-------TGCA------GGC-----AAGTGCAG---CGCGTTTC----------------------CCACGGCCGCCTGGCAACTCTATAAATGAATCATAAGAGGG--GCTGAT---------------------------------AGAGCGAGAAA--A----AGA----A--------------------------------------AA-----GAACAAAAAGAGGGAGTGCA--------TAC------------------CAGCATACCAAAA-G-----CGC--AAGCCAAAAAAAGAAC------------------T------------ATAAGACCCAAATTACAGTG-----------TACAA--ACTATACAGTGAACCTACTTTC-TT---CTTA--CAT------CCACAGTGAGCCCTCGGTGCAATCGAAGAG-------------------------------------------------------AGAT----TTCA---TT
droBip1 scf7180000396371:1306770-1307088 + CATCGATGTT--ATACACACTT----GGCG---------------GCCCA------------CATAAACA------TTGCAATATTTTCATTTAA-G--AA-ATA-----AACGA-----------ATC-GCA--AT-TG------GGAATTGCAAGTGCAG---CGCGTTTC----------------------CCACGGCCGCCTGGCAACTCTATAAATGAATCATAAGAGGG--GCTGAT---------------------------------AGAGCGAGAAA--A----AGA----A--------------------------------------AA-----GAACAAAAAGAGGGAGTGCA--------TAC------------------CAGCATACCAAAA-G-----CGC--AAACCAAAAAAAGAAC------------------T------------ATAATACCCAAATTACAGTG-----------TACAA--ACTATATAGTGAAACTACTTTC-TT---CTTA--CAT------CCACAGTGAGCCCTCGGTACAAACGGAGAG-------------------------------------------------------AGAT----TTCA---TT
dp5 XR_group6:5039441-5039568 - GCCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGCAACTCTAAAAATGAATCATAAAAGAC--CAAGATAGAGCG------------------------------ACGAGAAC--G----AGC---------------------------------------------------AACAAAAAAGAAGAGTGCA--GTCAGTTCTT-----------------GAAGCCAGCACAGCA-----TAC--AAACCAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-AA----CCCA--AAA
droPer2 scaffold_9:3348849-3349148 - G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCTAGCAACTCTAAAAATGAATCATAAAAGAC--CAAGATAGAGCG------------------------------ACGAGAAC--G----AGC---------------------------------------------------AACAAAAAAGAAGAGTGCA--GTCAGTTCTTGAAGCCAGCA-------CAGCATACAAACCAA-AAA-C-C--AACCCAAAAC-------------CAAACCAAAAAACGAAACGAAACGCTACAAACGAATTTACAGTGCAATCGAGCTTTATTC--AACATACAACAAATTG-CTTTC-T-----TTA--TTCA-----CCACATTGCGCTCTCGGTAACAGCAACAGTGACACCGGCAGTGGCAAAGCGGTGGCAGCGGA--AAA---GC---A-------G-----AAGCGCCAGCGGA
droWil2 scf2_1100000004768:2287049-2287117 + AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AAACGCATTTT-TC---TCTA--CATT-----CCACAGTGTGCACTCAGTAAAAGTGATAA------------------------------------A----AC---G-------GTT-AG----ACCA--AGA
droVir3 scaffold_13049:3997717-3997960 + CATT-AT-----GTGCGCATTT----GTCA---------------GCCAC------TGCTGCAA------TTATAAGTGT---TTT-T-CATTGAAC--AA-AGAACAAATTTG-----A---------------TT-TG------CATGCTACA-AGTGTGTGCATTGTTTGTTGGGCGCTCAACAGTGCCATCTCGCCGCTACTCGACAACTCTAAAAATGAATCATAAAAATGTTGAGGGTAGAGCGCAATTGTGCTGAG--------------TGAGC--------------------------------------------------------------G--AGGAG-AACATT-----------TTGAGTTCA------------------TTACAAAAAAAAAAA-----AGA--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AAAT--AAA
droMoj3 scaffold_6654:126332-126496 - GCACGTT-----CTACGTGCAA----TTGT---------------CAGTA------TTGTGCTATAGCTATTAAAAGTAT---TTTTT-TATTGAAC--AA-AAACGAAAATTG-----AC------TT-GCATGCTACAAGTGTGCGAATTGCT----AGGCGCTTAA----------------CATCTCCA--TCATAGCCGCTTGACAACTCTGAAAATGAATCATTAAAAT-----------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:10750132-10750340 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCTCGACAACTCTAAAAATGAATCATAAAAATGTTGAGGGTAGAGCGAATTTGTGCTGAGTGAGCGAGTGAGCGAGCGAGCGAAC--G----AGC----GAG-AACA-------CTTCGAGTTCATTACAAAAAAAAA----ATAGAAG-AAAAAAAAGAGTGCA--GTAAATTCCTAAAAGCAGTGCCAGCACCAGCAAACCAACC---------------ACAGAACG-----------------------A------------AACAAAACGAATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGCCGAT-----GTACGCACAT----GGGT---------------GCCCA------GTGTGCAA-------TTTAAGTGC---ATTTT-AAGTGA-CAGAG-CTC-----AGTGAAATTTAAGGGAATC-TCCGGCTTGA------GGCGTTGCA-GTGGGGCGCTGCGTTCG----------------------GTGCGGCCGCCTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGT------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A------------CTCGCAGCGAATTTAGCGT------------TAAT---TGTGTCTAAA-AAGCGCCTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCCCTCGGTAGCAGTGACGGCCGTCTCGA-----------------------G--GA----AC---A-------ATC-AA----GCCA--GGASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG-----------------------A------------CTCGCAGCGAATTTAGCGT------------T.......................................................................................................................................................2611.00100000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTCGGTAGCAGTGACGGCC.......................................................................2211.00100010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---CTTA--CTCCCC---CCACAGTGT.............................................................................................2111.00100001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGTAGCAGTGACGGC........................................................................1911.00100000000001000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................AAA-----CGC--AAACCAAAAAG-----------------------A------------CTCG...................................................................................................................................................................................2211.00100000000000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGTCTCGA-----------------------G--GA----AC---A-------ATC-AA----GC.......2511.00100000010000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................AA-----CGC--AAACCAAAAAG-----------------------A------------CTCG...................................................................................................................................................................................2111.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................AA-----GAAG-AAAAGAGGGAGT...............................................................................................................................................................................................................................................................................................1811.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAATTTAGCGT------------TAAT---TGTGT............................................................................................................................................2311.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................A-----CGC--AAACCAAAAAG-----------------------A------------CTCGC..................................................................................................................................................................................2111.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCCGTCTCGA-----------------------G--GA----AC---A-------ATC-AA----GC.......2711.00100000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT---TGTGTCTAAA-AAGCGCCTTTC-T.........................................................................................................................2411.00100000000001000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTCTAAA-AAGCGCCTT.............................................................................................................................1911.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTTAGCGT------------TAAT---TGTGTC...........................................................................................................................................2111.00100001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAAAAAA-----CGC--AAACCA................................................................................................................................................................................................................................2011.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGCAGTGACGGCCGTCTCGA-----------------------.........................................2111.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGA-----------------------G--GA----AC---A-------ATC-AA----.........1811.00100010000000000000
droSec2
GGGCGAT-----GTACGCACAT----GGGT---------------GCCCA------GTGTGCAA-------TTTAAGTGC---ATTTT-AAGTGA-CAGAG-CTC-----AGTGAAATTTAAGGGAATC-TCCGGCTTGA------GGCGTTGCA-GTGGGGCGCTGCGTTCG----------------------GTGCGGCCGCCTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGT------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A------------CTCGCAGCGAATTTAGCGT------------TAAT---TGTGTCTAAA-AAGCGCTTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCCCTCGGTAGCAGTGACGGCCGTCTCCA-----------------------G--GA----AC---A-------ATC-AA----GCCA--GGASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCA-----------------------G--GA----AC---A-------ATC-AA----GCCA--GG.2212.0020020
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAA-AAGCGCTTTTC-TT---CTT..................................................................................................................2111.0010010
............GTACGCACAT----GGGT---------------GCCCA------GTGTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................AA-----CGC--AAACCAAAAAG-----------------------A------------CTCGCAGC...............................................................................................................................................................................2511.0011000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGC--AAACCAAAAAG-----------------------A------------CTCGCAGCGA.............................................................................................................................................................................2511.0011000
....................................................................................................................................................................................................................................................................................................................................................................AGAGGGAGTGCA--GTCAGTTCT------------------CAGC...........................................................................................................................................................................................................................................................2511.0010100
................................................................................................................................................................................................................................................................................................................G-TTGT------G------------------------AA-----GAAG-AAAAGAGGGAGT...............................................................................................................................................................................................................................................................................................2411.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCCCTCGGTAGCAGTGAC...........................................................................2211.0010100
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGTCTCCA-----------------------G--GA----AC---A-------A..................1911.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCCCTCGGTAGCAGT..............................................................................2011.0010001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC---CCACAGTGTGCCCTCGGTAGCAG...............................................................................2511.0010010
.................................................................................................................................................................................................................................................................................................................................................................AAAAGAGGGAGTGCA--GTC.......................................................................................................................................................................................................................................................................................1811.0010010
.......................................................................................................................................CTTGA------GGCGTTGCA-GTGGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCAGCGAATTTAGCG.....................................................................................................................................................................1811.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................GC--AAACCAAAAAG-----------------------A------------CTCGCAGC...............................................................................................................................................................................2211.0010100
dm3
GGCCGAT-----GTACGCACAT----GGGT---------------GCCCA------GTGTGCAA-------TTTAAGTGC---ATTTT-AAGTGA-GAGAG-CTG-----AGTGAAATTTAAGGGAATC-TCCGGCTTGA------GGCGTTGCA-GTGGGGCGCTGCGTTCG----------------------GTGCGGCCGCCTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGT------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A------------CTCGCAAAGAATTTAGCGT------------TTAT---TGTGTCTAAA-AAGCGCCTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCTCTCGGTAGCAGTGACGGCCGTCTCGA-----------------------G--GA----AC---A-------GTC-AA----GCCA--GGASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................................................................................................................................................................................A-----GAAG-AAAAGAGGGAGTG..............................................................................................................................................................................................................................................................................................18138.00380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000300000000000000000000000000000000011000001101002020000000000000000100000000000000001100001011113140000000001003100
............................................................................................................................................................................................................................................................................................................................G------------------------AA-----GAAG-AAAAGAGGGAGTG..............................................................................................................................................................................................................................................................................................2017.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000010001101000000000001010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGACGGCCGTCTCGA-----------------------G--GA----AC---...........................2217.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000025000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGA-----------------------G--GA----AC---A-------GTC-AA----GCCA--...2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................G------------------------AA-----GAAG-AAAAGAGGGAG................................................................................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000002002000000000001000
..............................................................................................................................................................................................................................................................................................................................................................................................................AGCATACCAAAAAA-----CGC--A.....................................................................................................................................................................................................................................1817.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGTGTGCTCTCGGTAGC.................................................................................2114.0040000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGTGCTCTCGGTAGCAGT..............................................................................2214.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000
..............................................................................................................................................................................................................................................................................................................GAG-TTGT------G------------------------AA-----GAAG-AAAAGAGGGAG................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000010000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCTCGA-----------------------G--GA----AC---A-------GTC-A..............2014.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA-----------------------G--GA----AC---A-------GTC-AA----GCCA--GGA2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---CCACAGTGTGCTCTCGGTAGCAGT..............................................................................2513.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000
..............................................................................................................................................................................................................................................................................................................GAG-TTGT------G------------------------AA-----GAAG-AAAAGAGGG..................................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000000
.....................................................................................................................................................................................................................................................................................................................................................AA-----GAAG-AAAAGAGGGAGTGCA--..........................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGGCCGTCTCGA-----------------------G--GA----AC---A-------GT.................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.........................................................................................................................................TGA------GGCGTTGCA-GTGGGGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCTCTCGGTAGCAGTGA............................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTCGGTAGCAGTGACGGCCG......................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGTGTGCTCTCGGTAGCAG...............................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................A----GAG-TTGT------G------------------------AA-----GAAG-AAAA.......................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000
..............................................................................................................................................................................................................................................................................................................GAG-TTGT------G------------------------AA-----GAAG-AAAAGA.....................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000
...................................................................................................................................................................................................................................ATTAGAGC-----------------------------------------GAGAACGAGA..............................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000
.........................................................................................AAGTGA-GAGAG-CTG-----AGTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCTCTCGGTAGCAGTGAC...........................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAG-----------------------A------------CTCGCAAAGAATTTAGCGT------------T.......................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................GCGTTGCA-GTGGGGCGCTGCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................GT------G------------------------AA-----GAAG-AAAAGAGGGAGTG..............................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGA-----------------------G--GA----AC---A-------GTC-AA----GCCA--GG.2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCTCGA-----------------------G--GA----AC---A-------GTC-AA----GCCA--...2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...............................................................................................................................................................................................................................................................................................................AG-TTGT------G------------------------AA-----GAAG-AAAAGAGGGAGTGC.............................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGA-----------------------G--GA----AC---A-------GTC-AA----GCCA--...2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGCTCTCGGTAGCAGT..............................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTAGCGT------------TTAT---TGTGTCT..........................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGACGGCCGTCTCGA-----------------------G--GA----AC---A-------GT.................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................AG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------C..............................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A------------.......................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTGCTCTCGGTAGCAGTGAC...........................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..............................................................................................................................................................................................................................................................................................................GAG-TTGT------G------------------------AA-----GAAG-AAAAG......................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTCGA-----------------------G--GA----AC---A-------GTC-AA----GC.......2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................CGC--AAACCAAAAAG-----------------------A------------CTCG...................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTCTCGA-----------------------G--GA----AC---A-------GTC-...............1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCCGTCTCGA-----------------------G--GA----AC---A-------GTC-...............2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..............................................................................................................................................................................................................................................................................................................GAG-TTGT------G------------------------AA-----GAAG-AAAAGAGG...................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000100000000000000000000000000000000000000
..........................................................................AAGTGC---ATTTT-AAGTGA-GAGAG-......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
...........................................................................................................................................A------GGCGTTGCA-GTGGGGCGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACGGCCGTCTCGA-----------------------G--GA----................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
GGCCGAT-----GTACGCACAT----GGGT---------------CATTA------GTGTGCAA-------TTTAAGTGC---ATT-T-AAGTGA-GAGAG-CCC-----AGTGAAATGAAAGGGAATC-TCCGGCTTGA------GACGTTGCA-GTAGGTTGCTGTGTTCG----------------------GTGCGGCCGCTTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGC------T------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAA-A-----CGC--AAACCAAAAAG-----------------------C------------CTCGCAGCGAATTTAGCGT------------TAAT---TGTGTCTAAA-AACCGCCTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCCCTCGGTAGTAGTGACGGCGGTCTCGA-----------------------G--GA----AC---A-------GCC-AA----ATCA--GGASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................................................................................................................................................GCTGTGTTCG----------------------GTGCGGCCGCTTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000010
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGACGGCGGTCTCGA-----------------------G--GA----AC---A-------GCC-...............2611.0010100000
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................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TT---CTTA--CTCCCC---CCACAGTG..............................................................................................2111.0010010000
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCTCGGTAGTAGTGACG..........................................................................2111.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGTGCCCTCGGTAGTAGT..............................................................................2311.0010000010
....GAT-----GTACGCACAT----GGGT---------------CATTA------GT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000100
droYak3
GGCTGAT-----GTACGCACAT----GGGT---------------CACAA------GTGTGCAA-------TTTAAGTGC---ATAAT-AAGTGA-AAGAG-TCC-----AGTGAAATGAAAGGGAATC-TTCAGCTTGA------GGCGTTGCA-TTGGGGCGCTGCGTTCG----------------------GTGCGGCTGCCTGGCAACCCTGAAAATGAATCATTAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGC------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAA-A-----CGC--AAACCAAAAAG-----------------------A------------CTCGCAGCGAATTTAGCGT------------TAAT---TGTGTCTAAA-AACCGCCTTTC-TT---CTTA--CTCCCC---CCACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCTCGA-----------------------G--GA----AC---A-------GTC-AA----ATCA--GGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................TCAGCTTGA------GGCGTTGCA-TT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGTGCCCTCGGTAGC.................................................................................2011.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGGCGGTCTCGA-----------------------G--GA----AC---A-------GTC-...............2311.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCC---CCACAGTGTGCCCTCGGT....................................................................................2311.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGTGTGCCCTCGGTAGCAGT..............................................................................2311.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCTCGGTAGCAGTGAC...........................................................................2011.00100000010000
.......................................................................................................................................................................................................................................................................................AACGAGAAC--G----AGA----GAG-TTGC------G------------------------AA-----GAAG-A..........................................................................................................................................................................................................................................................................................................2811.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCTCGGTAGCAGTGACGGC........................................................................2311.00100000010000
droEug1
AGCTGAT-----ATACACACAT----TGTGC--------------ACACA------GTGTGAAA-------GACAAGTGC---ATATA-AAGTGA-G--AA-TTA-----AGTGAAATGGAAGGGAAAT-TTAAGTTTAA------GGCGTTGCA-GAGAACCGCTGCGTTCG----------------------CCGCAGCCGCCTGGCAACTCTAAAAATGAATCATAAGAGC-----------------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGC--------------------------------------GAAG-AAAAGAGGGAGTGCA--GTTCGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A----------------CAGCGAATTTAGAGT------------TTAT---AGTGTCTAAA-AAGCGCCTTTC-TT---CTTA--CTCC--C--CTACAGTGTTCCCTCGATAACAGTGACGGCGGTCCCAA-----------------------C--GT----AC---A-------GGA-AA----ACCA--GGASizeHit CountTotal NormTotal
No Reads
droBia1
ATCTGAG-----GTACACACACACGCTC--CGC----GT-CCGCA-CAAGGCGTGTGTGTGACA-------CAAAAGTGC---ATTTT-AATTGA-G--AA-CGC-----AGTGATACGAAAGGGAATT-TGCCGTTTAA------GGCGTTGCA-GTGAAGCGCTGCGCCCG----------------------CTGCGACGGCCTGGCAACTCTGCAAATGAATCATAAGAGC-----------------------------------------GAGAACGAGAGC--TAGAGAGA----GAG-TTGC------G------------------------AA-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-AG-AAGC-AAAACCAAAAAG----C------------------A------------CTCGCAGCGAATTTAGAGT------------TAATC--AGTGTCTAAAGAACCGCCTTTC-TT---TTC-TACACCCCC--TTACAGTGCGCCCGCGGTAGCAGTGACGGCGGTCCCGA-----------------------A-CGT----AC---A-------GTG-AA----ACCA--GGASizeHit CountTotal NormTotal
No Reads
droTak1
CGGTGAT-----ATACATACAGACATTC--CGA----TCCCCGCA-CCAA--GTGTGTGTGACA-------AAAAAGTGA---ACTTT-AATTGA-G-GAG-CGC-----AGTGAAATGAAAGCGAAAT-TGCCGTTTAA------GGCGTTGCA-TTG--------C----G----------------------TTGCGGCGGTCTGGCAACCCTAAAAATGAATCATAAGAGC-----------------------------------------GAGAACGAGAACTAG----AGA----GAG-TTTC---GGAG------------------------AAGA--AGAAG-AAAAGAGGGAGTGC----------------------------------ATACCAAAAAAAAG-AAGCAAAAACCAAAAAA----C------------------A------------CTCGCAGCGAATTTAGAGTT-----------TAATA--AGTGTCTAAAGAGCCGCCTTTC-TT---TTC-TACTCCCCCTTTTACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCCCGA-----------------------AACGA--AAAC---A-------GTG-AA----GCCA--GGASizeHit CountTotal NormTotal
No Reads
droEle1
AGCTGAT-----ATACACACAT----TGTACGAAAAA---------CCCA------------AA------CAACAAGTGC---ATTTT-AATTGA-A--AA-TCA-----AGTGAAATGACTGAGAATG-GCGAGTTTAA------GGCGTTGCA-GTGA-GAGCTGAGTGGC----------------------TCGC-GCTGGCTGGCAACCCTAAAAATGAATCATAAGAGCT--------A--GA---------------------------GAGAACGAGAAC--G----AGA----GAG-TTGCTAGGGAG------------------------AAGA--AGAAG-AAAAGAGGGAGTGCA------GTTCT------------------CAGCATACCAAAAAA-----TCC-AAAACCAAAAAG-----------------------A------------CTCGCAGCGAATTTAGAGT------------TAATAATAGTGTCTAAACAATCGTCTTTC-TT---CTTA--TTCC--C--AAACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCTCAA-----------------------A--AAAAAAACGAAA-------CTC-AAAATTACCA--GGASizeHit CountTotal NormTotal
No Reads
droRho1
AGATGAT-----ACACACACAT----TATACGAAAA----------ACCA------------AC------CAACAAGTGC---ATTTT-AATTGA-A--AA-TCA-----AGTGAAATGGAAGATAAAT-GCACGTTTAA------GGCGTTGCA-GTGA-GAGCTAGGTTTC----------------------TCGCGGTCG-ATGGCAACCCTAAAAATGAATCATAAGAGCT--------A-------------------------------GAGAACGAGAAC--G----AGA----GAG-TTGT------G------------------------AAGA--AGAAG-AAAAGAGGGAGTGCA------GTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAG-----------------------A------------CTAGCAGCGAATTTAGAGT------------TAAT---AGTGTCTAAAAAAACGTCTTTC-TT---CTTA--TTCC--C--AAACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCTCAA-----------------------A--AA----AA---A-------CTC-AAAATTACCA--GGASizeHit CountTotal NormTotal
No Reads
droFic1
AGCTGAT-----ACACACACAT----TGTACGAAA-----------CGAA------AACTCTAA-------AGCAAGTGC---ATTTT-AATTGA-A--AA-TTC-----AGTGAAGTATTTGAGAAGTGTGATCTATGA------GACTCTGCA-GTGGGGATCTGAGTTTG----------------------GGGCGACCGCCTGGCAACTCTAAAAATGAATCATAAGAGC-----------------------------------------GAGAATAAGAACAAG----AGA----GAG-TTG---------------------------------A-----GAAG-AAAAGAGGGAGTGCA--GTCAGTTCT------------------CAGCATACCAAAAAA-----CGC--AAACCAAAAAC-----------------------A------------CTCGCAGCGAATTTAGAGT------------TATT---AGTGTCTAAA-AACCGCATTTC-TT---TCTA--CTTT--C--ATACAGTGTGCCCTCGGTAGCAGTGACGGCGGTCTTAA-----------------------A--AAA---AC---A-------A---AA----GCGT--AGASizeHit CountTotal NormTotal
No Reads
droKik1
CCCTTTG-TTATATACACACA------AACCG---------------TCA------ATTCGTGG------CTAGGAGTGC---TTTTT-AATTAA-T--AAAAGAACAACAGTGATTCG--AGAGCATT-GCA--TTATG------GGCATTGCAAGTCT--AAATGCGTTTGTG--------------------GTGC-GCCGCCTGGTAACCCTGTAAATGAATCATAAGATAG--------A--GA---------------------------GAGAACGAGAGC--GACAGAGAGGGCGAGTTTAC------G------------------------AAGAAGCGAAG-AAAAGAGGGAGTGCAGAGTTAGTTCT------------------CAGCATACAAAAAAA-AAA-A----A------------AACTACAAACCAATCAAAAATCCGA-------TGATCTCAAAGAATTTTCCAGC-----------TAAAC--AGTGTT-------------TTCTTTACGCTTA--TCTACC---CCACAGTGCGCCCTCGGTAACACTGACCGGAGC----------------------------G--GA----AC---AGGGAACAGGAGAC----TTCT---TTSizeHit CountTotal NormTotal
No Reads
droAna3
CATCGATGTT--ATACACACTT----GGCG---------------GCCCA------------CATAAACA------TTGCTATATTTT-CATTTAAG--AA-ATA-----AGCGAAACGCATTGCAAAT-------TGCA------GGC-----AAGTGCAG---CGCGTTTC----------------------CCACGGCCGCCTGGCAACTCTATAAATGAATCATAAGAGGG--GCTGAT---------------------------------AGAGCGAGAAA--A----AGA----A--------------------------------------AA-----GAACAAAAAGAGGGAGTGCA--------TAC------------------CAGCATACCAAAA-G-----CGC--AAGCCAAAAAAAGAAC------------------T------------ATAAGACCCAAATTACAGTG-----------TACAA--ACTATACAGTGAACCTACTTTC-TT---CTTA--CAT------CCACAGTGAGCCCTCGGTGCAATCGAAGAG-------------------------------------------------------AGAT----TTCA---TTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
........................................................................................................................................TGCA------GGC-----AAGTGCAG---CGCGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...................................................................................................................................................................................................................................................................................................................................................................AAGAGGGAGTGCA--------TAC------------------CAGC...........................................................................................................................................................................................................................................................2011.001000001
.....ATGTT--ATACACACTT----GGCG---------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..............................................................................................................................................................................................................................GAATCATAAGAGGG--GCTGAT---------------------------------AGAGC..................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
.............................................................................................................................AAAT-------TGCA------GGC-----AAGTGCAG---CGCGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--CAT------CCACAGTGAGCCCTCGG.....................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................GAACAAAAAGAGGGAGTG..............................................................................................................................................................................................................................................................................................1811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGTGCAATCGAAGAG-------------------------------------------------------A................2011.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCCTCGGTGCAATCGAAGA.........................................................................2211.001000100
....................................................................................................................................................................................................CACGGCCGCCTGGCAACTCTA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................................................TGAATCATAAGAGGG--GCTGAT---------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................................................................................................................................................AAAAAGAGGGAGTGCA--------TAC------------------CAGC...........................................................................................................................................................................................................................................................2311.001010000
.........................................................................................................................................................................................................................TAAATGAATCATAAGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100
....GATGTT--ATACACACTT----GGCG---------------GC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACAGTGAGCCCTCGGTGCAAT...............................................................................2311.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTA--CAT------CCACAGTGAGCCCTCGGT....................................................................................2511.001000001
..................................................................................................................................................................................................................................................................................................A----AGA----A--------------------------------------AA-----GAACAAAAAGAGA...................................................................................................................................................................................................................................................................................................2040.251010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTACAGTG-----------TACAA--AG...............................................................................................................................................1840.251000100
..............................................................................................................................................................................................................................................................................................AA--A----AGA----A--------------------------------------AA-----GAACAAAAAC......................................................................................................................................................................................................................................................................................................19200.051010000
droBip1
CATCGATGTT--ATACACACTT----GGCG---------------GCCCA------------CATAAACA------TTGCAATATTTTCATTTAA-G--AA-ATA-----AACGA-----------ATC-GCA--AT-TG------GGAATTGCAAGTGCAG---CGCGTTTC----------------------CCACGGCCGCCTGGCAACTCTATAAATGAATCATAAGAGGG--GCTGAT---------------------------------AGAGCGAGAAA--A----AGA----A--------------------------------------AA-----GAACAAAAAGAGGGAGTGCA--------TAC------------------CAGCATACCAAAA-G-----CGC--AAACCAAAAAAAGAAC------------------T------------ATAATACCCAAATTACAGTG-----------TACAA--ACTATATAGTGAAACTACTTTC-TT---CTTA--CAT------CCACAGTGAGCCCTCGGTACAAACGGAGAG-------------------------------------------------------AGAT----TTCA---TTSizeHit CountTotal NormTotal
No Reads
dp5
GCCTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAGCAACTCTAAAAATGAATCATAAAAGAC--CAAGATAGAGCG------------------------------ACGAGAAC--G----AGC---------------------------------------------------AACAAAAAAGAAGAGTGCA--GTCAGTTCTT-----------------GAAGCCAGCACAGCA-----TAC--AAACCAAAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC-AA----CCCA--AAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................GAAGAGTGCA--GTCAGTTCTT-----------------G..............................................................................................................................................................................................................................................................2112.0020200000000
....................................................................................................................................................................................................................................................................................................................................................................AAGAAGAGTGCA--GTCAGTTCTT-----------------GAA............................................................................................................................................................................................................................................................2511.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................TCTT-----------------GAAGCCAGCACAGCA-----TA.........................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................AGAGCG------------------------------ACGAGAAC--G----AGC---------------------------------------------------AACA...........................................................................................................................................................................................................................................................................................................2211.0010000001000
..............................................................................................................................................................................................................................................................................................AC--G----AGC---------------------------------------------------AACAAAAAAGAAGAGTG..............................................................................................................................................................................................................................................................................................2311.0010000000001
.............................................................................................................................................................................................................................................................................................................................................................................GCA--GTCAGTTCTT-----------------GAAGCCAGCACAGC.................................................................................................................................................................................................................................................2711.0010010000000
droPer2
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCCTAGCAACTCTAAAAATGAATCATAAAAGAC--CAAGATAGAGCG------------------------------ACGAGAAC--G----AGC---------------------------------------------------AACAAAAAAGAAGAGTGCA--GTCAGTTCTTGAAGCCAGCA-------CAGCATACAAACCAA-AAA-C-C--AACCCAAAAC-------------CAAACCAAAAAACGAAACGAAACGCTACAAACGAATTTACAGTGCAATCGAGCTTTATTC--AACATACAACAAATTG-CTTTC-T-----TTA--TTCA-----CCACATTGCGCTCTCGGTAACAGCAACAGTGACACCGGCAGTGGCAAAGCGGTGGCAGCGGA--AAA---GC---A-------G-----AAGCGCCAGCGGASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGCGGA--AAA---GC---A-------G-----AAGC.........2211.001010000
droWil2
AA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-AAACGCATTTT-TC---TCTA--CATT-----CCACAGTGTGCACTCAGTAAAAGTGATAA------------------------------------A----AC---G-------GTT-AG----ACCA--AGASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATAA------------------------------------A----AC---G-------GTT-AG----ACCA--A..2112.00200110
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTT-TC---TCTA--CATT-----CCACAGTGT.............................................................................................2411.00100010
droVir3
CATT-AT-----GTGCGCATTT----GTCA---------------GCCAC------TGCTGCAA------TTATAAGTGT---TTT-T-CATTGAAC--AA-AGAACAAATTTG-----A---------------TT-TG------CATGCTACA-AGTGTGTGCATTGTTTGTTGGGCGCTCAACAGTGCCATCTCGCCGCTACTCGACAACTCTAAAAATGAATCATAAAAATGTTGAGGGTAGAGCGCAATTGTGCTGAG--------------TGAGC--------------------------------------------------------------G--AGGAG-AACATT-----------TTGAGTTCA------------------TTACAAAAAAAAAAA-----AGA--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AAAT--AAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................................................TAAAAATGTTGAGGGTAGAGC...................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000020000000000000000000000000000000000000000000000001000
...........................................................................................................................................................................................................................................................AATTGTGCTGAG--------------TGAGC--------------------------------------------------------------G--AGG..............................................................................................................................................................................................................................................................................................................2112.002000000001000000000000010000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TGAATCATAAAAATGTTGAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................2112.002001000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................AATGTTGAGGGTAGAGCGCAAT..............................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................CGCTCAACAGTGCCATCTCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................CAACAGTGCCATCTCGCCGCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................CA-AGTGTGTGCATTGTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001000000000000000000000000000000000000000000000000000000000
.ATT-AT-----GTGCGCATTT----GTCA---------------GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.........................................................................................................................................................................................................................................................GCAATTGTGCTGAG--------------TGAGC--------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................1911.001000000000001000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................TTGTGCTGAG--------------TGAGC--------------------------------------------------------------G--AGGAT-C..........................................................................................................................................................................................................................................................................................................2211.001000001000000000000000000000000000000000000000000000000000000000
............................................................................................................AATTTG-----A---------------TT-TG------CATGCTACA-A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................GTGCTGAG--------------TGAGC--------------------------------------------------------------G--AGGAG-AA.........................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
.....................................................................................................................................................................................................................................AAAAATGTTGAGGGTAGAGCGCAAT..............................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000100
.....AT-----GTGCGCATTT----GTCA---------------GCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................TGCATTGTTTGTTGGGCG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000100000000000000000000000000000
.......................................................................................................................................................TACA-AGTGTGTGCATTGTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............CGCATTT----GTCA---------------GCCAC------TGCTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA-----AGA--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AA.......19200.051000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AAAAAAAAAAA-----AGA--A----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA----AAA......20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCACGTT-----CTACGTGCAA----TTGT---------------CAGTA------TTGTGCTATAGCTATTAAAAGTAT---TTTTT-TATTGAAC--AA-AAACGAAAATTG-----AC------TT-GCATGCTACAAGTGTGCGAATTGCT----AGGCGCTTAA----------------CATCTCCA--TCATAGCCGCTTGACAACTCTGAAAATGAATCATTAAAAT-----------------------------------------G---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGCTCGACAACTCTAAAAATGAATCATAAAAATGTTGAGGGTAGAGCGAATTTGTGCTGAGTGAGCGAGTGAGCGAGCGAGCGAAC--G----AGC----GAG-AACA-------CTTCGAGTTCATTACAAAAAAAAA----ATAGAAG-AAAAAAAAGAGTGCA--GTAAATTCCTAAAAGCAGTGCCAGCACCAGCAAACCAACC---------------ACAGAACG-----------------------A------------AACAAAACGAATTTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................AAAGCAGTGCCAGCACCAGC...........................................................................................................................................................................................................................................................2011.00110
.........................................................................................................................................................................................................................................................................................AGCGAAC--G----AGC----GAG-AACA-------CTT............................................................................................................................................................................................................................................................................................................................................2111.00110
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAACC---------------ACAGAACG-----------------------A------------AACAAAACG..............................................................................................................................................................................2311.00110
.........................................................................................................................................................................................................................................................................AGCGAGTGAGCGAGCGAGCG...............................................................................................................................................................................................................................................................................................................................................................................2020.50110

Generated: 05/19/2015 at 05:27 AM