ID:

dsi_9780

 Coordinate:

2r:5316964-5317020 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCTCAAGCCCAGCTATGATCACTTCGATCTCAAGAGCTCCCGCAGTTACGGTAAGTCCAAAGAGAACTGAAAAACAGTAGAATAGTACAATCTAAATGTTGTCTTAGTTCGCAATACAGCCATCCTGAGCAACGACAGCGATGTGAACGCGGGGGAG
**************************************************.........((((.(((.........(((......))).........))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
.......................TCGATCTCAAGAGCTCCC.................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
......................TTCGATCTCAAGAGCTCCCGAAGTT.............................................................................................................. 25 1 1 2.00 2 0 1 0 0 1 0 0 0 0
......................TTCGATCTCAAGAGCTCCC.................................................................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0
.....................CTTCGATCTCAAGAGCTCCCG................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................CTTCGATCTCAAGAGCTCC..................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................GATCTCAAGAGCTCCCGCAGTTACGTTCG....................................................................................................... 29 3 1 1.00 1 0 0 0 0 0 0 1 0 0
...............................................ACGGTAAGTCCAAAGAGA............................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0
...................CACTTCGATCTCAAGAGCT....................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................AACGACAGCGATGTGAAC......... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
......................TTCGATCTCAAGAGCTCCCG................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................CCTGAGCAACGACAGCGATGT............. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................AGTCCAAAGAGAACGG........................................................................................ 16 1 3 0.33 1 0 0 0 0 0 0 0 0 1
..................................................................................................TTGTCTTAGTTCGGA............................................ 15 1 7 0.29 2 0 0 0 2 0 0 0 0 0
...........................................TGTTACGGTCAGTCCAAA................................................................................................ 18 2 5 0.20 1 0 0 0 0 0 0 0 0 1
.....................................................................................TATAATCAAAATCTTGTCTTA................................................... 21 3 13 0.15 2 0 0 0 0 2 0 0 0 0
.............................................TAACTGTTAGTCCAAAGA.............................................................................................. 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0
..........................................CAGTTGCGGTAATTCCA.................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGAGTTCGGGTCGATACTAGTGAAGCTAGAGTTCTCGAGGGCGTCAATGCCATTCAGGTTTCTCTTGACTTTTTGTCATCTTATCATGTTAGATTTACAACAGAATCAAGCGTTATGTCGGTAGGACTCGTTGCTGTCGCTACACTTGCGCCCCCTC
**************************************************.........((((.(((.........(((......))).........))).))))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
.....................................AGGGCTTCAATGCCAT........................................................................................................ 16 1 1 6.00 6 3 2 0 0 1 0 0
...................................AGAGGGCTTCAATGCCAT........................................................................................................ 18 2 1 3.00 3 1 1 1 0 0 0 0
.......................................GGCGTCAATGCCATTCAGGTT................................................................................................. 21 0 1 2.00 2 0 0 0 2 0 0 0
...................................AGAGGGCTTCAATGCCA......................................................................................................... 17 2 4 1.25 5 2 3 0 0 0 0 0
.....................................AGGGCTTCAATGCCATT....................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0
..................................TCGAGGGCTTCAATGC........................................................................................................... 16 1 1 1.00 1 0 0 1 0 0 0 0
.....................................AGGGCTTCAATGCCATG....................................................................................................... 17 2 11 0.55 6 2 3 0 0 1 0 0
.....................................AGGGCTTCAATGCCA......................................................................................................... 15 1 2 0.50 1 0 0 0 0 1 0 0
.....................................AGGGCTTCAATGCCATA....................................................................................................... 17 2 6 0.33 2 1 1 0 0 0 0 0
....................................GAGGGCTTCAATTCCAT........................................................................................................ 17 2 4 0.25 1 1 0 0 0 0 0 0
...................................AGAGGGCTTCAATGCCATA....................................................................................................... 19 3 5 0.20 1 0 0 1 0 0 0 0
....................................GAGGGCTTCAATGCC.......................................................................................................... 15 1 5 0.20 1 0 0 1 0 0 0 0
....................................................................................................................GTCGGTAGGACTCGTTAGTT..................... 20 3 6 0.17 1 0 0 1 0 0 0 0
...........................................CCAATGCCATTCAGC................................................................................................... 15 2 20 0.10 2 2 0 0 0 0 0 0
...................................AGAGGGCTTCAATGCCATG....................................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0 0
.................................................................................................................TATGTCGGCAGGGTTCGTT......................... 19 3 11 0.09 1 0 0 0 0 0 0 1
..................AGTGAAGCCCGAGTACTCG........................................................................................................................ 19 3 13 0.08 1 0 0 1 0 0 0 0
.....................................AGGGCTTCAATGCCAC........................................................................................................ 16 2 16 0.06 1 1 0 0 0 0 0 0
..................................AAGAGGGCTTCAATGCCAT........................................................................................................ 19 3 19 0.05 1 0 0 0 0 0 1 0
...................................GGAGGGCTTCAATGC........................................................................................................... 15 2 20 0.05 1 1 0 0 0 0 0 0
.............................................AATGCCATTCAGCTGCCT.............................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0
.........................................................GTTTGTCTTGACTTTT.................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0
...................................AGAGGGCTTCAATGCCAC........................................................................................................ 18 3 20 0.05 1 0 0 0 0 1 0 0
.....................................AGGGCTTCAATGCCACTA...................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0

Generated: 04/23/2015 at 12:58 PM