ID:

dsi_9763

 Coordinate:

3l:16297321-16297470 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-24.6 -24.5 -24.2

Flybase annnotation

five_prime_UTR [3l_16297005_16297554_+]; exon [3l_16297005_16297663_+]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
TCCGCTAGAATTTAATTAAATCTATAGCGTCGCGAAAAATCGTTGTGGAATTTATGTATTGTTTGTCCTCCATTGTGTGCCCCCTCCAGCCCCAACACACTCTCCTCCTCGTCCGCGTCCCAATGGAAATGTCAACACACACACACACAACAGAGAGGCCCGGAATGCTACACTGATTCTGTTGACACTTCGGTGACCAGAGTTCCAGAATTCCAGAGTTTTTCCAGCCAGCGTTTTCCCAATGAGCAGG
**************************************************.....(((((....((((((..(((((((................................((((........))))..(((......)))..)))))))..))).)))....)))))..((((((.............)))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...........................................................TGTTTGTACTCCATTGTGT............................................................................................................................................................................ 19 1 1 1.00 1 0 0 0 1 0 0
................................................................................................................................ATGTCAACACACACACACACAACAGAGA.............................................................................................. 28 0 1 1.00 1 0 0 1 0 0 0
..................................................................................................................................................ACAACCGAGAGGTCCGG....................................................................................... 17 2 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................CAGAATTCCAGCGTTTGTACAG....................... 22 3 1 1.00 1 0 1 0 0 0 0
...........................................TGTGGACTTTATCTATTGCTTGT........................................................................................................................................................................................ 23 3 2 0.50 1 0 0 0 0 1 0
............................................ATGGAATTTATGCATTGTTTGTT....................................................................................................................................................................................... 23 3 2 0.50 1 1 0 0 0 0 0
........................................................................TTGGGTGCCCCCTCCA.................................................................................................................................................................. 16 1 2 0.50 1 0 1 0 0 0 0
........................................................................................................................TAATGGATATGTTAACACACA............................................................................................................. 21 3 6 0.17 1 0 0 0 0 0 1
..............................................................TTGTCCTCGATTGTGT............................................................................................................................................................................ 16 1 9 0.11 1 1 0 0 0 0 0
..............GTTAAGTCTCTAGCGTCG.......................................................................................................................................................................................................................... 18 3 14 0.07 1 0 1 0 0 0 0
..........................................................................................................TCTCGTCCGAGTCCCA................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1
.................................................................................................................................................AACAAGAGAGAGGCCCCG....................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0

Anti-sense strand reads

AGGCGATCTTAAATTAATTTAGATATCGCAGCGCTTTTTAGCAACACCTTAAATACATAACAAACAGGAGGTAACACACGGGGGAGGTCGGGGTTGTGTGAGAGGAGGAGCAGGCGCAGGGTTACCTTTACAGTTGTGTGTGTGTGTGTTGTCTCTCCGGGCCTTACGATGTGACTAAGACAACTGTGAAGCCACTGGTCTCAAGGTCTTAAGGTCTCAAAAAGGTCGGTCGCAAAAGGGTTACTCGTCC
**************************************************.....(((((....((((((..(((((((................................((((........))))..(((......)))..)))))))..))).)))....)))))..((((((.............)))))).....************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................................................................................................................GGCCGCAAAAGGGATACTCGT.. 21 2 1 3.00 3 3 0 0 0 0 0 0 0
..................................................................................................................................................................CTTACGATGTGACTAAGGCAA................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................CACTGGTCTCAAGGTCTTAAG..................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................TCACTGGTCTCAAGGTCTTAA...................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................CCACTGGTCTCAAGGTCTTAA...................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.............................................................................ACGGGGGAGGTCGGGGTTGTGTGA..................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0
.............................................................................TCGGGGGAGGTCGGGGTTGTGT....................................................................................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................TCGCAGTGCTTTTTAGTAACAG........................................................................................................................................................................................................... 22 3 1 1.00 1 0 1 0 0 0 0 0 0
.............................................................................................TTTTGTCAGAGCAGGAGCAGGC....................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0 0 0
.............................................................................TAGGGGGAGGTCGGGGTTGTG........................................................................................................................................................ 21 2 2 0.50 1 0 0 0 0 0 0 1 0
...................................................................................GAGGTCGGGGTTGTGA....................................................................................................................................................... 16 1 5 0.20 1 0 0 0 1 0 0 0 0
..............................................................................................................................................................GGGCCTGACCATGTGA............................................................................ 16 2 11 0.18 2 0 0 0 0 0 2 0 0
....................................................................................................AAAGGAGGAGCAGGAGCACGGT................................................................................................................................ 22 3 7 0.14 1 0 0 0 0 1 0 0 0
..................................................................................................................................................TGGTCTCTCTCCGGGC........................................................................................ 16 2 15 0.13 2 2 0 0 0 0 0 0 0
.............................................................................................................................................................CGGGCCTGACCATGTG............................................................................. 16 2 19 0.11 2 0 0 0 0 0 2 0 0
.................................................................................................................................................................................................ACACCTCTCAAGGTCTTA....................................... 18 3 20 0.10 2 0 0 0 0 0 0 0 2
..............................................................................................................................................................GGGCCTGATCATGTGACT.......................................................................... 18 3 12 0.08 1 0 0 0 0 0 1 0 0
...................................................................................GGGGTCGGGGTTGTGT....................................................................................................................................................... 16 1 15 0.07 1 0 0 0 1 0 0 0 0
........................................................................................CGGGGTTGTTTGAGGGGTGG.............................................................................................................................................. 20 3 16 0.06 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................CGGGCCTGACTATGTG............................................................................. 16 2 18 0.06 1 0 0 0 0 0 1 0 0
............................................................................................................................................................ACGGGCCTGACCATGTGA............................................................................ 18 3 20 0.05 1 0 0 0 0 0 1 0 0
.......................................................................................................................................................TCACTCCGGGCCTGAC................................................................................... 16 2 20 0.05 1 0 0 0 0 0 1 0 0
...................................................................................................................................................................................ACCACTGCGAATCCACTG..................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0
............ATTATTTTAGATATC............................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 04:05 AM