ID:

dsi_9735

 Coordinate:

2r:15963138-15963381 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.8 -25.3 -25.3

Flybase annnotation

five_prime_UTR [2r_15962934_15963432_-]; exon [2r_15962934_15963432_-]

No Repeatable elements found

Sense Strand Reads

########################################################################################################################################################################################################################################################################################################################################################
TTCGTGCTCTGCCCGTCGGACGTGTCCGTACGATTTTGGATTAAGTTCTCGTAGGCAATTCAACTTGAAATATTTATTTGCTGCGGTGCAACTAAAATTTAATTCAAAGAATTAAAAGTGCTAAGTGCTGTTAGCAGCGGCCATTTTGCAAAAAAATATTAACAGTTATTTGGTGTAGTGCAAGAAGCCGAAAAGAAAACAAAATTATTTATATTAAACATATTGCATTCAAGGCAATAAAAAGTTAAATCTATTAAAATATTTTCTACCCTCTCCCTCCCCTTTTACCGATAGTCTCCCTCTGTGGCGTATGTGTGTTTGTACGAATTAGCGGCTGAAAACCA
*********************************************************************........((((((((((((........((((((((...))))))))........)))))).)))))).(((..(((((((.....(((((((.......)))))))..))))))).)))*********************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 M024
male body		 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 O002
Head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
..........GCCCGTCGGACGTGTCCG............................................................................................................................................................................................................................................................................................................................ 18 0 1 5.00 5 2 2 0 1 0 0 0 0 0 0 0 0
......CTCTGCCCGTCGGACGTGTCCG............................................................................................................................................................................................................................................................................................................................ 22 0 1 4.00 4 1 3 0 0 0 0 0 0 0 0 0 0
TTCGTGCTCTGCCCGTCGGACG.................................................................................................................................................................................................................................................................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0 0
............................TACGATTTTGGATTAAGT.......................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.........................CCGTACGATTTTGGATTAAGTTCTCG..................................................................................................................................................................................................................................................................................................... 26 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
........CTGCCCGTCGGACGTGTCC............................................................................................................................................................................................................................................................................................................................. 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................TTTGGTGTAGTGCAAGAAGCC........................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GCAGCGGCCATATCGAAAAAA.............................................................................................................................................................................................. 21 3 9 1.33 12 0 0 0 12 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TTTACCGATAGTCTCCCTCTGTGGCGT.................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................TCTCGTAGGCAATTCAAC........................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................GTGTGTTTGTACGAATTAGCGGCTGAA..... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................TTTGTACGAATTAGCGGCTGTTT.... 23 3 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................................................................................................TGTGTTTGTACGAATTAGCGGCG........ 23 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................GTGTTTGTACGAATTAGCGGCTGAAAACCA 30 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.......TCTGCCCGTCGGACGTGTCCGTA.......................................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................TACGAATTAGCGGCTGAAAACC. 22 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
...........................GTACGATTTTGGATTAAGT.......................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................ATTTTGGATTAAGTTCTCT..................................................................................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........GCCCGTCGGACGTGTCCGTACGATTTTGGA................................................................................................................................................................................................................................................................................................................ 30 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................ATATTTATTTGCTGCGGTG................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................TGTCCGTACGATTTTGGATT.............................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........GCCCGTCGGACGTGTCCGTA.......................................................................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................ACGAATTAGCGGCTGAAAAA.. 20 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........TGCCCGTCGGACGTGTCC............................................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................TACGATTTTGGATTAAGTTCTCG..................................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................GTCCGTACGATTTTGGATT.............................................................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......CTCTGCCCGTCGGACGTGTCC............................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................TGAAATTATTTTCTACCCTCTC..................................................................... 22 2 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
............CCGTCAGACGTGTCCGTACG........................................................................................................................................................................................................................................................................................................................ 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................GATTTTGGATTAAGTTCTCGTAGAC................................................................................................................................................................................................................................................................................................ 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................TATTTGGTGTAGTGCAAGAAGCCGAA........................................................................................................................................................ 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....GCTCTGCCCGTCGGACGTG................................................................................................................................................................................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
......CTCTGCCCGTCGGACGTG................................................................................................................................................................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
............................TACGATTTTGGATTAAGTTCTCGTA................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................GGACGTGTCCGTACGATTTTGGA................................................................................................................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
..........................................AAGTTCTCGTAGGCAATTCAACT....................................................................................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...............................GATTTTGGATTAAGTTCTCGT.................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.TCGTGCTCTGCCCGTCGG..................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................GTCCGTACGATTTTGGATTAAGTT......................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................ACGAATTAGCGGCTGAAAACC. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.................GGACGTGTCCGTACGATTTTGGATT.............................................................................................................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................CGATTTTGGATTAAGTTCTCG..................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.....................................GGATTAAGTTCTCGTAGGCAAT............................................................................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
.....................................................................................................................................GCAGCGGCCATATCGAAAAAAA............................................................................................................................................................................................. 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..................GACATGTCCGTACGAT...................................................................................................................................................................................................................................................................................................................... 16 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................AGCAGCGGCCATATCGAAAAAAA............................................................................................................................................................................................. 23 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
...............TCTGACATGTCCGTACGACT..................................................................................................................................................................................................................................................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................................................................................TTAAAAGTGATAAGGGCTGTTAGCA................................................................................................................................................................................................................ 25 2 3 0.33 1 0 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................GCAGCGGCCATATCGCAAAATA............................................................................................................................................................................................. 22 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
............................................................................................................................GTGCTGTGAGCAGCTGCCA......................................................................................................................................................................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0
..................GACATGTCCGGACGATT..................................................................................................................................................................................................................................................................................................................... 17 2 9 0.22 2 0 0 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................TGGCGTACGTGTGTTTGTT..................... 19 2 5 0.20 1 0 0 0 0 1 0 0 0 0 0 0 0
..........GCCCGACGGACGTGT............................................................................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
....................CATGTCCGTACGATT..................................................................................................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................GATGTTGGATTAAGT.......................................................................................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................CTTAGCAGCGGCCAT........................................................................................................................................................................................................ 15 1 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................AGCGGCCATATCGAAAAAAA............................................................................................................................................................................................. 20 3 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0 0
..................................CTTGGATTAAGTTCCCGGA................................................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................TGAACACAAAATTATTTTTATT................................................................................................................................. 22 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................ATAGCAGCGGCCATATT..................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................GATTTTGGGTTAAGT.......................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AAGCACGAGACGGGCAGCCTGCACAGGCATGCTAAAACCTAATTCAAGAGCATCCGTTAAGTTGAACTTTATAAATAAACGACGCCACGTTGATTTTAAATTAAGTTTCTTAATTTTCACGATTCACGACAATCGTCGCCGGTAAAACGTTTTTTTATAATTGTCAATAAACCACATCACGTTCTTCGGCTTTTCTTTTGTTTTAATAAATATAATTTGTATAACGTAAGTTCCGTTATTTTTCAATTTAGATAATTTTATAAAAGATGGGAGAGGGAGGGGAAAATGGCTATCAGAGGGAGACACCGCATACACACAAACATGCTTAATCGCCGACTTTTGGT
***********************************************************************************************************************************************************........((((((((((((........((((((((...))))))))........)))))).)))))).(((..(((((((.....(((((((.......)))))))..))))))).)))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................AATCGTCGCCGGTATA...................................................................................................................................................................................................... 16 1 2 1.50 3 3 0 0 0 0
...................................................................................................................................ATCGTCGCCGGTATA...................................................................................................................................................................................................... 15 1 8 0.88 7 7 0 0 0 0
.........................................................................................................................................................................................TCGGCTTTTCTTTTGTTTTA........................................................................................................................................... 20 0 2 0.50 1 0 1 0 0 0
...................................................................................................................................ATCGTCGCCGGTATAGCGTTG................................................................................................................................................................................................ 21 3 2 0.50 1 1 0 0 0 0
....................................................................................................................................TCGTCGCCGGTATAGCGTT................................................................................................................................................................................................. 19 2 5 0.40 2 2 0 0 0 0
...................................................................................................................................ATCGTCGCCGGTATAGCG................................................................................................................................................................................................... 18 2 4 0.25 1 1 0 0 0 0
..................................................................................................................................AGTCGTCGCCGGTATAGCGTT................................................................................................................................................................................................. 21 3 6 0.17 1 1 0 0 0 0
.................................................................................................................................AAATCGTCGCCGGTATA...................................................................................................................................................................................................... 17 2 20 0.15 3 3 0 0 0 0
.................................................................................................................................AAATCGTCGCCGGTATAA..................................................................................................................................................................................................... 18 2 8 0.13 1 1 0 0 0 0
..................................................................................................................................................................GTCACTAAACCACATCAA.................................................................................................................................................................... 18 2 9 0.11 1 0 0 1 0 0
...................................................................................................................................ATCGTCGCCGGTATAGCTT.................................................................................................................................................................................................. 19 3 20 0.10 2 2 0 0 0 0
........................................................................................................................................................................................................................................................................AGATGGTAGAGGGAG................................................................. 15 1 11 0.09 1 0 0 0 1 0
....................GAACAGGCATGCTAA..................................................................................................................................................................................................................................................................................................................... 15 1 15 0.07 1 1 0 0 0 0
................................................................................................................................AGAATCGTCGCCGGTAT....................................................................................................................................................................................................... 17 2 18 0.06 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................................GAAATTGGCTATCTGA............................................... 16 2 20 0.05 1 0 0 0 0 1
.........................GGCATGCTGACACCTA............................................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................TCCGAGGGAGACAGCGCC.................................. 18 3 20 0.05 1 1 0 0 0 0
..............................................................................................................................................................................................................................................................................................TGGCTCTCCGAGGGAG.......................................... 16 2 20 0.05 1 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:15963088-15963431 - dsi_9735 TTC-----------------GTGCTCTGC----CCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAACTTG---AAATATTTA--------TTTGCT-------GCGGTGCAACTAAAATTTAATT-CAAAGAAT------TA---------------AAAGTGCTAAGTGCT-GTTAGCAGCGGCCATTTTG-C----AAAAA---------AATATTA-----------------------------ACAGTTATTT----------GGTGTAGTGC----------------AA-GAAG-C-CG-AAA--AGAA-AACA---------AAA-TTATTTATATTAAA-CATA--TTGC--ATTCAAGG-CAATAAAAAGTTAAATCTATTAAAATATTTTCT-ACCCTCTCCCTCCC-C-TTTTACCGA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAACCA
droSec2 scaffold_1:12827326-12827669 - TTC-----------------GTGCTCTGC----CCGTCGGATGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAACTTG---AAATAGTTA--------TTTGCT-------GCGGTGCAACTAAAATTTAATT-CAAAGAAT------TA---------------AAAGTGCTAAGTGCT-GTTAGCAGCGGCCATTTTG-C----AAAAA---------AGTATTA-----------------------------ATAGTTATTT----------GGTGTAGTGC----------------AA-GAAG-C-CG-AAA--AGGA-AACA---------AAA-TTATTTATTTTAAA-CATA--TTGC--ATTCAAGG-CAATAAAATATTAAATCTATTAAAATATTTTCT-ACCCTCTCCCTCCC-C-TTTTACCGA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAACCA
dm3 chr2R:15311253-15311598 - TTC-----------------GTGCTCTGC----CCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAACTTG---AAATATTTA--------TTCGCT-------GCGGTGCAACTAAAATTTAATT-CAAAGAAT------TA---------------AAAGTGCTAAGTGCT-GTTAGGAGCGGCAATTTTG-CAAAAAAAAA---------AATATTA-----------------------------ACAGTTATTT----------GGTGTAGTGC----------------AA-GAAG-C-CC-AAA--AGAG-AACA---------AAA-TTATTTATTTTAAA-CATA--TTGC--ATTCAAGG-CAATAAAAAGTTAAATCTATTAAA--ATTTTCT-ACCCTCTCCCTCCC-C-TTTTATTGA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAACCA
droEre2 scaffold_4845:9509946-9510291 - TTC-----------------GTGCTCTGC----CCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAATTTGAATAAATA-TTA--------TTTGCT-------GCGGTGCAACTAAAATTTAATT-TAATGAAT------TA---------------ATAGTGCTAAGTGCC-GTTAGCAGCGGCCATTTTG-A----AATAA---------TATATTA-----------------------------CCAGTTATTC----------GGTGTAGTGC----------------AA-GAAG-C-CC-AAA--G---CAACA-------AAAAA-TTATTTATTTTAAA-TATA--TTGC--ACTCGAGG-CAATAAAAAGTAAAATCTATTAAA-CATTTTCT-ATCCTCTCCCTCCCCC-TTTTACCGA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAATCA
droYak3 2R:13864959-13865304 + TTC-----------------GTGGTCTGC----CCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCACTTCAACTTGAATAAATG-TTA--------TTTGCT-------GCGGTGCAACTAAAATTTAATT-CAAAGAAT------TA---------------ATAGTGCAAAGTGCC-GTTAGATGCGGCCATTTTG-A----AATAA---------AATATTA-----------------------------ACAGTTACAT----------GGTGTAGTGC----------------AA-GAAG-T-CC-TAAGCAA--C---A-------AAAAA-AATTTTATTTTAAA-CATA--TTGC--ATTCGAGG-CAATAAAAAGTAAAATCTATTAAA-CATTTTCT-ACCCTCTGCCTCCCTC-TTTTACCTA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAACCA
droEug1 scf7180000409474:2645428-2645777 + TTCTTCGTCCATTTGTCAACGTGCGCTGT----TCGTCGGA--------TACGATTTTGGATT-----AAG----TTCTCGTAGGCAATACAATT------ATTATTTA--------TTTGCAGCAGTGCTTGGTGCATT-------T-TCT-TAAAGAATTAAAATTA---------------ACAGTGCAAAGTGCC-GTTAGCAGCGGCCATCTTTGA-------AA---------AATATTA-----------------------------ACAGTT--------------TGTGTAGTGC----------------AA-GGAG-C-CC-AAA--AA--C---A-------TATAAGTAATTTATTTTAAA-CAAA--TTGT--ATTCAAGG-CAATACAAAGTTAAATCTATTAAA---TTCTCA-CCCCTCTCCCTCCTCCCCTTTACTGA----TAGTCTC------TCTCTGTGGCATACA------TATGTGTGTTTGTATG--------AAATAGCTGCCGAAAACC-
droBia1 scf7180000302143:2784175-2784534 - TTCCTCGTCCATTTGTCAACGTGCGCTGT----TCGTCGGACGTGTCCGTACGATTTTGGATT-----AAA----TTCTCGTAGGCAATACATAAA---AAAATACTTA--------TTTGCAGCAGTGCGCGGTGCAGT-------T-CTT-GAAAGAAT------CA---------------ACAGTGCAAAGTGCC-GTTAGTAGCGGCCATCTTTGA-------AA---------AATATTA-----------------------------ACAGTTACTT----------GGTGTAGTGC----------------AA-GAAG-C-CCCGAA--AG--C---G-------AAAAA-TAATTTATTTTAAA-CAAA--TTTT--GTTCAAGG-CATT-TAAAGTTAAATCTATTAAA---TTCTCTTCCCCTCTCCATCCC-C-TTTTGCCGA----TAGTCTCTCTCTCCCTCTGTGGCG----------TATGTGTGTTTGTACG--------ATATAGCAGCCGAAAAACG
droTak1 scf7180000415379:166951-167251 - T---------------------------------------------CAGTACAATTTTTTATT-----AGC----TCTTCGTAGGGAATTCTAA-----AAAAT---AA--------TTTAC---AGTGCGCGGTGCAAT-------T-TAT-TAATGAAT------CG---------------ACAGTGCAAAGTGCC-GTTAGCAGCGGCCATCTTTAA-------TA---------CATATTA-----------------------------ACAGTTACTT----------GGTGTAGTGC----------------AA-GT---C-CC-AAA--AA--C---A-------A-AAA-TAAAACATTTTAAA-CAAA--TTGT--ATTCAAGG-CA---AAAAGTTAAATCTATTAAA---TTCTCTTTCCCTCTCCCTCCC-C-TTTTACCGA----TAGTCTCTC----TCTCTGTGGCG----------TATGTGTGTTTGTACG--------AAATAGCTGCCGAAAAACG
droEle1 scf7180000491258:10617-10948 + TTC-----------------GTGCTCTGG----TCGTCGGACGTGTCCGTACGTTTTTGGATT-----AAG----TTCTCGTAGGCAATTCAATT-----ATTTATTTA--------TTTGCAGCGGTGCGCGGTGCATT-------C-TTTAAAAAGAGT------TA---------------ACAGTGCAAAGTGCC-GTTAGCAGCGGCCATCTTTAA-------AAT--------AGTATTT-----------------------------ACAGTTATTT----------GGTGTAGTGA----------------AA-GAAA-C-CC-AAA-AAA--CTACA---------AA----AATTATAATAAT-CAAA--TTTT--ATTCAAGG-CGATTAAAAGTACAATTT-TTAAT---CTTTTT-CCCCTTTCCCTCCC-C-CTTT-TCGT----TAGTCTC------TCTCTGTGGCC----------TATGAGTGTTTGTTCA--------AAATAGCAGCCGAAAACC-
droRho1 scf7180000772433:17784-18110 + TTC-----------------GTGCGCTGG----TCGTCGGACGTGTCCGTACGATTTTGGATT-----GAG----TTCTCGTAGGCAATTCAACT---------ATTTA--------TTTGCAGCAGTACGCGGTGCATT-------C-TTT-ACAAGAAT------TA---------------ATAGTGCAAAGTGCC-GTTAGCATCGGCCATCTTTAA-------AA---------TATATTA-----------------------------ACATTTATTT----------GGTGTAGTGA----------------AA-GAAG-C-AC-AAA--AA--C---A-------AAAAA-CCAATTATTTAAAAAAAAA--TTGT--ATTAAAAG-CAATAAAAAGTTAAATCTTTTACA---TTTTCT-CCCCTTTCCCTCCC-C-TTTT-TCGT----TAGTCTCTCTC--TCTCTGTGGCA----------TATGTGTGTTTGTATA--------AAATAGCAGCCG-------
droFic1 scf7180000454039:600448-600792 - TTTCGTGTCCATTTGTCAACTTGCGCTGTTCGATCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAACTA---AAAATATTTA--------TTTGCAGCAGTGCGCGGTGCATT-----------T-TAAAAAAT------TT---------------ACGGTGCAAAGTTCC-GTTAACGGCGGCCATCTTTGA-------AA-------------TTA----------------------------TACAGTTACTT----------GGTGCAGTGC----------------AA-AAGA-C-CC-CAA--A---CTT-A-------GAAAA-TTAATTATTTTAAA-CAAA--TTTT--ATTAAAGG-AATTAAGAAGTTAAACCTATTAAA---TTTTCT-CCCCTCTCCCTACCCC--TTTTACGA----TAGTCTC------TCTCTGTGGCA----------TATGTGTGTTTGTACG--------AAATAGCAGCCG-------
droKik1 scf7180000302471:1568913-1569263 - TTCTTCGTCCATTTGTCAACGTGCGCTGT----TCGTCGG-----TCCGCA-GACTTTTGATT-----AAG----TT--CGTA--CAAGTTAAA-----AAGATATTTTCACACT---CTACCGTAGT--GCAGTGCATT-----------A-AAGAGAAT------TATTTAGCCTTTTTGGTGCGGTGCAAAGTGCC-GTTAGCGGC-GCCATCTTTAA-------AA---------CATATTA-----------------------------ACAGTTATTT----------ACTGAAGTGA----------------AGCGAAG-C-CG-AGC--AG--C---GGCGTTCCTAAAA-------GTTTTAAAGAAAATATT----GCTCGATC-CCACAAAAATTTAATTCTATTAAA---TTCTCT-CCCCTCTCCCTCCC-C-TTTT---GA----TAGTC----------TCTGCGGCA----------TATGTGTGTTTGTACG--------AAATAGCAGCCGAAAACCA
droAna3 scaffold_13266:1954105-1954485 + TC---------------AAAGTGCGCTGT----TCGTCGGACGA-TTCGTATT---------TATTTTCCCCCAAAGTTCGTAGGCAATTTTAATA---CAAATATTTA--CAGTTAATTGCAATAGT--GCGGTGCAATGAA-----------------------------------------AT-------AGTGCCTACGAGCGGC-GCCATCTTTAA-------ACTTTAAGATATATATTAACCGTTAAGAAAGAGAGAGAGAGCATTTTACCGTTATTTCGATCAGTGAGGTGCAGTGCC--TTGTTTTGAATTCAG-GAAGAT-CC-AAA--A-----------------------------TTTATG-CAAT--TTTTAAATTCAAGC-CAATAAAAAGTTAAATTTATTAAA---TTTTCT--CCCTTTCCCCCCA-----TTTCTGATTTGTAGTCT---------TCTGTGGCATACATAGGTGTGTGTGTG-TTGTACGAATATATGAAATAGCAGCCGAA-----
droBip1 scf7180000396730:2939927-2940284 + CTC---GTCGAGTTGTCAAAGTGCGCTGT----TCGTCGGACGATT-C-----------GTTTATATTCCC----AGTTCGTATTTAATTTTAATA---CAAATATTTA--CAGTTAATTGCAATAGT--GCGGTGCAAT---------------------------TA---------------ATAGTGC-------CTACGAGCGGC-GCCATCTTTAA-------ACTTTAAGA--TATATTTACCGTTAG----------GAGAGCAT-TTACCGTTATTT-GATCAGTGCGGTGCAGTGCTTATTGTTTTGGGTTCAG-GAAGAGCCC-AA---------------------------------TTTATA-CAAA--TTTTA-ACTCAGCCCCAATAAAAAGTTAAATTTATTAAA---TTCT------CTCTCCCTCCCCC--TCT-TTGAT--ATAGTC----------TCTGTGGCA----------TATGTGTGTTTGTACGAATATATGAAATAGCAGCCGA------
droPer2 scaffold_2:2947075-2947135 + TTC-----------------GAGTTGTG---------CGGACGTGTGCGTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTATTGTA----------CTCGTGTGTGTG------------A---AACGACTGGA-----

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTC-----------------GTGCTCTGC----CCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAACTTG---AAATATTTA--------TTTGCT-------GCGGTGCAACTAAAATTTAATT-CAAAGAAT------TA---------------AAAGTGCTAAGTGCT-GTTAGCAGCGGCCATTTTG-C----AAAAA---------AATATTA-----------------------------ACAGTTATTT----------GGTGTAGTGC----------------AA-GAAG-C-CG-AAA--AGAA-AACA---------AAA-TTATTTATATTAAA-CATA--TTGC--ATTCAAGG-CAATAAAAAGTTAAATCTATTAAAATATTTTCT-ACCCTCTCCCTCCC-C-TTTTACCGA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAACCASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................GC----CCGTCGGACGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.00520200000001000000
.......................CTCTGC----CCGTCGGACGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.00430100000000000000
TTC-----------------GTGCTCTGC----CCGTCGGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00300300000000000000
.................................................TACGATTTTGGATT-----AAG----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200000000000000
..............................................CCGTACGATTTTGGATT-----AAG----TTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.00210100000000000000
.........................CTGC----CCGTCGGACGTGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00202000000000000000
..........................................................................................................................................................................................................................................................................................TTT----------GGTGTAGTGC----------------AA-GAAG-C-C..............................................................................................................................................................................................................2112.00200200000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTACCGA----TAGTCTC------CCTCTGTGGCG----------T..........................................2711.00101000000000000000
............................................................................TCTCGTAGGCAATTCAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTGTACG--------AATTAGCGGCTGAA.....2711.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTACG--------AATTAGCGGCTGTTT....2311.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTTTGTACG--------AATTAGCGGCG........2311.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTACG--------AATTAGCGGCTGAAAACCA3011.00100000000100000000
........................TCTGC----CCGTCGGACGTGTCCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACG--------AATTAGCGGCTGAAAACC.2211.00100000000000010000
................................................GTACGATTTTGGATT-----AAG----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
.....................................................ATTTTGGATT-----AAG----TTCTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000000000
...........................GC----CCGTCGGACGTGTCCGTACGATTTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3011.00100000010000000000
......................................................................................................ATATTTA--------TTTGCT-------GCGGTG..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000000000
...........................................TGTCCGTACGATTTTGGATT-----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
...........................GC----CCGTCGGACGTGTCCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG--------AATTAGCGGCTGAAAAA..2011.00101000000000000000
..........................TGC----CCGTCGGACGTGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
.................................................TACGATTTTGGATT-----AAG----TTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000000000
............................................GTCCGTACGATTTTGGATT-----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
.......................CTCTGC----CCGTCGGACGTGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
........................................................................................................................................................................................................................................................................................TATTT----------GGTGTAGTGC----------------AA-GAAG-C-CG-AA..........................................................................................................................................................................................................2611.00100010000000000000
......................GCTCTGC----CCGTCGGACGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000100000000000
.......................CTCTGC----CCGTCGGACGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.................................................TACGATTTTGGATT-----AAG----TTCTCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
......................................GGACGTGTCCGTACGATTTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010000000000000
....................................................................AAG----TTCTCGTAGGCAATTCAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110000000000000000
....................................................GATTTTGGATT-----AAG----TTCTCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000000000
.TC-----------------GTGCTCTGC----CCGTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
............................................GTCCGTACGATTTTGGATT-----AAG----TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG--------AATTAGCGGCTGAAAACC.2111.00101000000000000000
......................................GGACGTGTCCGTACGATTTTGGATT-----......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000000000000000
...................................................CGATTTTGGATT-----AAG----TTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000100000000000
..........................................................GGATT-----AAG----TTCTCGTAGGCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000010000000
droSec2
TTC-----------------GTGCTCTGC----CCGTCGGATGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAACTTG---AAATAGTTA--------TTTGCT-------GCGGTGCAACTAAAATTTAATT-CAAAGAAT------TA---------------AAAGTGCTAAGTGCT-GTTAGCAGCGGCCATTTTG-C----AAAAA---------AGTATTA-----------------------------ATAGTTATTT----------GGTGTAGTGC----------------AA-GAAG-C-CG-AAA--AGGA-AACA---------AAA-TTATTTATTTTAAA-CATA--TTGC--ATTCAAGG-CAATAAAATATTAAATCTATTAAAATATTTTCT-ACCCTCTCCCTCCC-C-TTTTACCGA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAACCASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................................................GTACGATTTTGGATT-----AAG----TTCTCGTAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020200
...........................................................GATT-----AAG----TTCTCGTAGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020020
.........................................TGTGTCCGTACGATTTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020002
.......................CTCTGC----CCGTCGGATGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0011000
..................................................ACGATTTTGGATT-----AAG----TTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
............................................................................................................................................................................................TGCTAAGTGCT-GTTAGCAGCGGC......................................................................................................................................................................................................................................................................................................................................2311.0011000
..C-----------------GTGCTCTGC----CCGTCGGATGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
........................................................................................................................................................................................AAAGTGCTAAGTGCT-GTTAGCAGCGG.......................................................................................................................................................................................................................................................................................................................................2611.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTACG--------AATTAGCGGCTGA......2011.0011000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTGGCG----------TATGTGT....................................1811.0010010
...............................................CGTACGATTTTGGATT-----AAG----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001
.......................................................................................................................................................................................................................................................................................................GGTGTAGTGC----------------AA-GAAG-C-CG-............................................................................................................................................................................................................1911.0011000
.........................CTGC----CCGTCGGATGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
.......................CTCTGC----CCGTCGGATGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
........................................ATGTGTCCGTACGATTTTGGATT-----AAG----TT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
...............................................CGTACGATTTTGGATT-----AAG----TTCTCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
...............................................CGTACGATTTTGGATT-----AAG----TTCTCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010010
.......................................................TTTGGATT-----AAG----TTCTCGTAGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
.............................................TCCGTACGATTTTGGATT-----AAG----TTCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
......................................................................................................ATAGTTA--------TTTGCT-------GCGGTGCAACT.............................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
...........................GC----CCGTCGGATGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
dm3
TTC-----------------GTGCTCTGC----CCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAACTTG---AAATATTTA--------TTCGCT-------GCGGTGCAACTAAAATTTAATT-CAAAGAAT------TA---------------AAAGTGCTAAGTGCT-GTTAGGAGCGGCAATTTTG-CAAAAAAAAA---------AATATTA-----------------------------ACAGTTATTT----------GGTGTAGTGC----------------AA-GAAG-C-CC-AAA--AGAG-AACA---------AAA-TTATTTATTTTAAA-CATA--TTGC--ATTCAAGG-CAATAAAAAGTTAAATCTATTAAA--ATTTTCT-ACCCTCTCCCTCCC-C-TTTTATTGA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAACCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................GC----CCGTCGGACGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................181151.0015100000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000100000100300000100000000000000000000000000000000001000000000000010000001375200100000000100000001010000000000104200311051002510024000000000014050010104013400200010000000001200003000000000000000
.......................CTCTGC----CCGTCGGACGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22120.00200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000010100000000000000000000001000000000000000000020000000002000244100000000000000
.........................................CGTGTCCGTACGATTTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20117.00170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000010000001000000000000000100000000000200100000000000100100100000000000004200
...........................GC----CCGTCGGACGTGTCCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20113.00130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010010000000000011000000000000000000000101000100000000010001101000000000100000000
.........................................CGTGTCCGTACGATTTTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18112.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001100000002010000000000000100000000000000000000000000000000000000000000000
...........................GC----CCGTCGGACGTGTCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19111.00110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000100020000000001000000000000000000000000000000000000000002001100000000000000000000
.......................CTCTGC----CCGTCGGACGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000001100000000000010000000000000020000000000000100000000000100000000000000000000000000000000000000
.........................................CGTGTCCGTACGATTTTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000001101000000000000000000000000000000000000000000000000000000000001010
...........................GC----CCGTCGGACGTGTCCGTACGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2317.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000300000000000000000
..................................................ACGATTTTGGATT-----AAG----TTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000000000000000000100000000000000000000000000000000000000001000000000000000000000000
............................................GTCCGTACGATTTTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000
...........................GC----CCGTCGGACGTGTCCGTACGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CTCTGC----CCGTCGGACGTGTCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2314.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000100011000000000000000
...........................GC----CCGTCGGACGTGTCCGTACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2214.0040000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.........................................................................................................................................................................................................................................................................................ATTT----------GGTGTAGTGC----------------AA-GAAG-C-...............................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001101000000000000000000000000100000000
....................GTGCTCTGC----CCGTCGGACGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000100000010000000000
.........................................CGTGTCCGTACGATTTTGGATT-----AAG----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000020000000000000000
................................................GTACGATTTTGGATT-----AAG----TTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................CTGC----CCGTCGGACGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000000000000000000000000000000000001000000000000000
.............................................TCCGTACGATTTTGGATT-----AAG----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................GATTTTGGATT-----AAG----TTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000
.....................TGCTCTGC----CCGTCGGACGTGTCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000
....................GTGCTCTGC----CCGTCGGACGTG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000
......................GCTCTGC----CCGTCGGACGTGTCCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000100000000000000000000000000
..........................TGC----CCGTCGGACGTGTCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000
....................................................GATTTTGGATT-----AAG----TTCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TC-----------------GTGCTCTGC----CCGTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.........................CTGC----CCGTCGGACGTGTCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000200000000000000
........................TCTGC----CCGTCGGACGTGTCCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000010000000000000000000000
...........................................................GATT-----AAG----TTCTCGTAGGCAAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000100000
.............................................TCCGTACGATTTTGGATT-----AAG----...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000
.........................CTGC----CCGTCGGACGTGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.......................................GACGTGTCCGTACGATTTTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGA----TAGTCTC------CCTCTGTGGCG----------T..........................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
..........................TGC----CCGTCGGACGTGTCCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTGGCG----------TATGTGTGTTTGT..............................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GATT-----AAG----TTCTCGTAGGCAATTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
................................................GTACGATTTTGGATT-----AAG----TTCTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
........................................................................................................................................................................................AAAGTGCTAAGTGCT-GTTAGGAAAA........................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.........................................CGTGTCCGTACGATTTTGGATT-----AAG----T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000001000
....................GTGCTCTGC----CCGTCGGACGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................AGTGCT-GTTAGGAGCGGC......................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG----------TATGTGTGTTTGTACG--------AATTAGC............2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................TGC----CCGTCGGACGTGTCCGTACG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
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droEre2
TTC-----------------GTGCTCTGC----CCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAATTTGAATAAATA-TTA--------TTTGCT-------GCGGTGCAACTAAAATTTAATT-TAATGAAT------TA---------------ATAGTGCTAAGTGCC-GTTAGCAGCGGCCATTTTG-A----AATAA---------TATATTA-----------------------------CCAGTTATTC----------GGTGTAGTGC----------------AA-GAAG-C-CC-AAA--G---CAACA-------AAAAA-TTATTTATTTTAAA-TATA--TTGC--ACTCGAGG-CAATAAAAAGTAAAATCTATTAAA-CATTTTCT-ATCCTCTCCCTCCCCC-TTTTACCGA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAATCASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................GGACGTGTCCGTACGATTTTGGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2416.0060000006
...........................................................GATT-----AAG----TTCTCGTAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000110
..............................................................................................................................................................................................CTAAGTGCC-GTTAGCAGC.........................................................................................................................................................................................................................................................................................................................................1811.0010000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTGTTTGTACG--------AATTAGCGGCTGAAA....2811.0010000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTACG--------AATTAGCGGCTGAA.....2511.0010000100
........................................................................................................................................................................A---------------ATAGTGCTAAGTGCC-GTTAGC............................................................................................................................................................................................................................................................................................................................................2211.0010000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGTACG--------AATTAGCGGCTGAAAATC.2711.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................A-TATA--TTGC--ACTCGAGG-CA...........................................................................................................................................1911.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------TATGTGTGTTTGTACG--------AATTAGCGGC.........2711.0011000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTGGCG----------TATGTGTGTTTGTAC............................2611.0010100000
........................TCTGC----CCGTCGGACGTGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010001000
......................GCTCTGC----CCGTCGGACGTGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCG----------TATGTGTGTTTGTACG--------A..................2311.0010010000
.......................................................................................................................................................T-TAATGAAT------TA---------------ATAGTGCT..........................................................................................................................................................................................................................................................................................................................................................1911.0010000100
................................................GTACGATTTTGGATT-----AAG----TTCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
...................................................CGATTTTGGATT-----AAG----TTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GA----TAGTCTC------CCTCTGTGGCG----------T..........................................2111.0010000010
droYak3
TTC-----------------GTGGTCTGC----CCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCACTTCAACTTGAATAAATG-TTA--------TTTGCT-------GCGGTGCAACTAAAATTTAATT-CAAAGAAT------TA---------------ATAGTGCAAAGTGCC-GTTAGATGCGGCCATTTTG-A----AATAA---------AATATTA-----------------------------ACAGTTACAT----------GGTGTAGTGC----------------AA-GAAG-T-CC-TAAGCAA--C---A-------AAAAA-AATTTTATTTTAAA-CATA--TTGC--ATTCGAGG-CAATAAAAAGTAAAATCTATTAAA-CATTTTCT-ACCCTCTGCCTCCCTC-TTTTACCTA----TAGTCTC------CCTCTGTGGCG----------TATGTGTGTTTGTACG--------AATTAGCGGCTGAAAACCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................GTCGGACGTGTCCGTACGATTTTGGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26112.0012000000000012
.............................................................................CTCGTAGGCACTTCAACT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000
....................................................................................................AAATG-TTA--------TTTGCT-------GCGGT...................................................................................................................................................................................................................................................................................................................................................................................................................1912.00201000010000
..............................................................T-----AAG----TTCTCGTAGGCACTTCAACTTGAAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
......................................................................................................................................................................................................................................................................................GTTACAT----------GGTGTAGTGC----------------AA-GA....................................................................................................................................................................................................................2111.00100000010000
..C-----------------GTGGTCTGC----CCGTCGGACGTGTCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................TATTTTAAA-CATA--TTGC--ATTCGAGG-C............................................................................................................................................2611.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGTGTTTGTACG--------AATTAGCGGC.........2511.00100100000000
....................................................................................................AAATG-TTA--------TTTGCT-------GCGGTGCAACTAA...........................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
.....................................................................................................AATG-TTA--------TTTGCT-------GCGGTGCAA...............................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000
......................GGTCTGC----CCGTCGGACGTGTCCGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC------CCTCTGTGGCG----------TATGTGTGT..................................2311.00100000010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGCG----------TATGTGTGTTTG...............................2111.00101000000000
......................GGTCTGC----CCGTCGGACGTGTCCGTAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
.....................................................................................................................................................................................................................................................A-----------------------------ACAGTTACAT----------GGTGTAGTGC----------------AA-GAAG-T-...............................................................................................................................................................................................................2811.00100000010000
.TC-----------------GTGGTCTGC----CCGTCGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000
..C-----------------GTGGTCTGC----CCGTCGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
.............................................................................................................................................................................................GCAAAGTGCC-GTTAGATGCGGCCATC..................................................................................................................................................................................................................................................................................................................................2611.00100100000000
..............................................................T-----AAG----TTCTCGTAGGCACTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...................................................CGATTTTGGATT-----AAG----TTCTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCTGTGGCG----------TATGTGTGTTTGTACG--------A..................2811.00100000100000
droEug1
TTCTTCGTCCATTTGTCAACGTGCGCTGT----TCGTCGGA--------TACGATTTTGGATT-----AAG----TTCTCGTAGGCAATACAATT------ATTATTTA--------TTTGCAGCAGTGCTTGGTGCATT-------T-TCT-TAAAGAATTAAAATTA---------------ACAGTGCAAAGTGCC-GTTAGCAGCGGCCATCTTTGA-------AA---------AATATTA-----------------------------ACAGTT--------------TGTGTAGTGC----------------AA-GGAG-C-CC-AAA--AA--C---A-------TATAAGTAATTTATTTTAAA-CAAA--TTGT--ATTCAAGG-CAATACAAAGTTAAATCTATTAAA---TTCTCA-CCCCTCTCCCTCCTCCCCTTTACTGA----TAGTCTC------TCTCTGTGGCATACA------TATGTGTGTTTGTATG--------AAATAGCTGCCGAAAACC-SizeHit CountTotal NormTotal
No Reads
droBia1
TTCCTCGTCCATTTGTCAACGTGCGCTGT----TCGTCGGACGTGTCCGTACGATTTTGGATT-----AAA----TTCTCGTAGGCAATACATAAA---AAAATACTTA--------TTTGCAGCAGTGCGCGGTGCAGT-------T-CTT-GAAAGAAT------CA---------------ACAGTGCAAAGTGCC-GTTAGTAGCGGCCATCTTTGA-------AA---------AATATTA-----------------------------ACAGTTACTT----------GGTGTAGTGC----------------AA-GAAG-C-CCCGAA--AG--C---G-------AAAAA-TAATTTATTTTAAA-CAAA--TTTT--GTTCAAGG-CATT-TAAAGTTAAATCTATTAAA---TTCTCTTCCCCTCTCCATCCC-C-TTTTGCCGA----TAGTCTCTCTCTCCCTCTGTGGCG----------TATGTGTGTTTGTACG--------ATATAGCAGCCGAAAAACGSizeHit CountTotal NormTotal
No Reads
droTak1
T---------------------------------------------CAGTACAATTTTTTATT-----AGC----TCTTCGTAGGGAATTCTAA-----AAAAT---AA--------TTTAC---AGTGCGCGGTGCAAT-------T-TAT-TAATGAAT------CG---------------ACAGTGCAAAGTGCC-GTTAGCAGCGGCCATCTTTAA-------TA---------CATATTA-----------------------------ACAGTTACTT----------GGTGTAGTGC----------------AA-GT---C-CC-AAA--AA--C---A-------A-AAA-TAAAACATTTTAAA-CAAA--TTGT--ATTCAAGG-CA---AAAAGTTAAATCTATTAAA---TTCTCTTTCCCTCTCCCTCCC-C-TTTTACCGA----TAGTCTCTC----TCTCTGTGGCG----------TATGTGTGTTTGTACG--------AAATAGCTGCCGAAAAACGSizeHit CountTotal NormTotal
No Reads
droEle1
TTC-----------------GTGCTCTGG----TCGTCGGACGTGTCCGTACGTTTTTGGATT-----AAG----TTCTCGTAGGCAATTCAATT-----ATTTATTTA--------TTTGCAGCGGTGCGCGGTGCATT-------C-TTTAAAAAGAGT------TA---------------ACAGTGCAAAGTGCC-GTTAGCAGCGGCCATCTTTAA-------AAT--------AGTATTT-----------------------------ACAGTTATTT----------GGTGTAGTGA----------------AA-GAAA-C-CC-AAA-AAA--CTACA---------AA----AATTATAATAAT-CAAA--TTTT--ATTCAAGG-CGATTAAAAGTACAATTT-TTAAT---CTTTTT-CCCCTTTCCCTCCC-C-CTTT-TCGT----TAGTCTC------TCTCTGTGGCC----------TATGAGTGTTTGTTCA--------AAATAGCAGCCGAAAACC-SizeHit CountTotal NormTotal
No Reads
droRho1
TTC-----------------GTGCGCTGG----TCGTCGGACGTGTCCGTACGATTTTGGATT-----GAG----TTCTCGTAGGCAATTCAACT---------ATTTA--------TTTGCAGCAGTACGCGGTGCATT-------C-TTT-ACAAGAAT------TA---------------ATAGTGCAAAGTGCC-GTTAGCATCGGCCATCTTTAA-------AA---------TATATTA-----------------------------ACATTTATTT----------GGTGTAGTGA----------------AA-GAAG-C-AC-AAA--AA--C---A-------AAAAA-CCAATTATTTAAAAAAAAA--TTGT--ATTAAAAG-CAATAAAAAGTTAAATCTTTTACA---TTTTCT-CCCCTTTCCCTCCC-C-TTTT-TCGT----TAGTCTCTCTC--TCTCTGTGGCA----------TATGTGTGTTTGTATA--------AAATAGCAGCCG-------SizeHit CountTotal NormTotal
No Reads
droFic1
TTTCGTGTCCATTTGTCAACTTGCGCTGTTCGATCGTCGGACGTGTCCGTACGATTTTGGATT-----AAG----TTCTCGTAGGCAATTCAACTA---AAAATATTTA--------TTTGCAGCAGTGCGCGGTGCATT-----------T-TAAAAAAT------TT---------------ACGGTGCAAAGTTCC-GTTAACGGCGGCCATCTTTGA-------AA-------------TTA----------------------------TACAGTTACTT----------GGTGCAGTGC----------------AA-AAGA-C-CC-CAA--A---CTT-A-------GAAAA-TTAATTATTTTAAA-CAAA--TTTT--ATTAAAGG-AATTAAGAAGTTAAACCTATTAAA---TTTTCT-CCCCTCTCCCTACCCC--TTTTACGA----TAGTCTC------TCTCTGTGGCA----------TATGTGTGTTTGTACG--------AAATAGCAGCCG-------SizeHit CountTotal NormTotal
No Reads
droKik1
TTCTTCGTCCATTTGTCAACGTGCGCTGT----TCGTCGG-----TCCGCA-GACTTTTGATT-----AAG----TT--CGTA--CAAGTTAAA-----AAGATATTTTCACACT---CTACCGTAGT--GCAGTGCATT-----------A-AAGAGAAT------TATTTAGCCTTTTTGGTGCGGTGCAAAGTGCC-GTTAGCGGC-GCCATCTTTAA-------AA---------CATATTA-----------------------------ACAGTTATTT----------ACTGAAGTGA----------------AGCGAAG-C-CG-AGC--AG--C---GGCGTTCCTAAAA-------GTTTTAAAGAAAATATT----GCTCGATC-CCACAAAAATTTAATTCTATTAAA---TTCTCT-CCCCTCTCCCTCCC-C-TTTT---GA----TAGTC----------TCTGCGGCA----------TATGTGTGTTTGTACG--------AAATAGCAGCCGAAAACCASizeHit CountTotal NormTotal
No Reads
droAna3
TC---------------AAAGTGCGCTGT----TCGTCGGACGA-TTCGTATT---------TATTTTCCCCCAAAGTTCGTAGGCAATTTTAATA---CAAATATTTA--CAGTTAATTGCAATAGT--GCGGTGCAATGAA-----------------------------------------AT-------AGTGCCTACGAGCGGC-GCCATCTTTAA-------ACTTTAAGATATATATTAACCGTTAAGAAAGAGAGAGAGAGCATTTTACCGTTATTTCGATCAGTGAGGTGCAGTGCC--TTGTTTTGAATTCAG-GAAGAT-CC-AAA--A-----------------------------TTTATG-CAAT--TTTTAAATTCAAGC-CAATAAAAAGTTAAATTTATTAAA---TTTTCT--CCCTTTCCCCCCA-----TTTCTGATTTGTAGTCT---------TCTGTGGCATACATAGGTGTGTGTGTG-TTGTACGAATATATGAAATAGCAGCCGAA-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................GTGCGCTGT----TCGTCGGAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1814.004003001
...................AGTGCGCTGT----TCGTCGGACG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002001001
...............................................................ATTTTCCCCCAAAGTTCGTAGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACATAGGTGTGTGTGTG-TT................................2111.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTGGCATACATAGGTGTGTGTGT....................................2611.001000010
..............................................................................................................................................................................................................................................................................ATTTTACCGTTATTTCGATCAGTGAGGT................................................................................................................................................................................................................................................2811.001000010
....................GTGCGCTGT----TCGTCGGACGA-T............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
........................................................................................................................................................................................................................................................................................................GTGCAGTGCC--TTGTTTTGA.............................................................................................................................................................................................................................1911.001000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTG-TTGTACGAATATATGAAA................2311.001000001
...........................GT----TCGTCGGACGA-TTCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
........................................ACGA-TTCGTATT---------TATTTTCCCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGTGTGTG-TTGTACGAATATATGAA.................2711.001010000
.C---------------AAAGTGCGCTGT----TCGTCGGACGA-TT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
..................................................................TTCCCCCAAAGTTCGTAGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATAGGTGTGTGTGTG-TTGTACG...........................2411.001000010
....................GTGCGCTGT----TCGTCGGACGA-TTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTG-TTGTACGAATATATGAAA................2111.001001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCATACATAGGTGTGTGTGT....................................2111.001001000
.................................................................TTTCCCCCAAAGTTCGTAGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
droBip1
CTC---GTCGAGTTGTCAAAGTGCGCTGT----TCGTCGGACGATT-C-----------GTTTATATTCCC----AGTTCGTATTTAATTTTAATA---CAAATATTTA--CAGTTAATTGCAATAGT--GCGGTGCAAT---------------------------TA---------------ATAGTGC-------CTACGAGCGGC-GCCATCTTTAA-------ACTTTAAGA--TATATTTACCGTTAG----------GAGAGCAT-TTACCGTTATTT-GATCAGTGCGGTGCAGTGCTTATTGTTTTGGGTTCAG-GAAGAGCCC-AA---------------------------------TTTATA-CAAA--TTTTA-ACTCAGCCCCAATAAAAAGTTAAATTTATTAAA---TTCT------CTCTCCCTCCCCC--TCT-TTGAT--ATAGTC----------TCTGTGGCA----------TATGTGTGTTTGTACGAATATATGAAATAGCAGCCGA------SizeHit CountTotal NormTotal
No Reads
droPer2
TTC-----------------GAGTTGTG---------CGGACGTGTGCGTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTATTGTA----------CTCGTGTGTGTG------------A---AACGACTGGA-----SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA----------CTCGTGTGTGTG------------A---AACGAC.........2311.001010000
......................GTTGTG---------CGGACGTGTGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
....................................................G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTATTGTA----------CTCGTGT....................................1911.001001000
..................................................GCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTATTGTA----------CTCGT......................................1911.001001000
.....................................CGGACGTGTGCGTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT.............................................................1911.001100000
......................GTTGTG---------CGGACGTGTGCGTGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..........................................GTGTGCGTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTATTGTA----------...........................................2211.001000001
....................................................G-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCTCTATTGTA----------CTCGTGTGTGTG------------A---AA.............2711.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTA----------CTCGTGTGTGTG------------A---AAC............1911.001001000
..C-----------------GAGTTGTG---------CGGACGTGTGCGTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCT.............................................................2811.001100000
.........................GTG---------CGGACGTGTGCGTGCG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T...............................................................2011.001000001

Generated: 05/18/2015 at 05:56 PM