ID:

dsi_9722

 Coordinate:

x:12825527-12825676 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.4 -5.1 -5.0

Flybase annnotation

exon [x_12825448_12825526_-]; CDS [x_12825448_12825526_-]; intron [x_12825527_12826172_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACGTAACAGAATTGACAAGAAACTGGGGTATTTTTTGGTCTTTCTGGGCGGCTGACAACCAATATCGCACCTAACGTCTACTCTCTTTTTATCTCTTTCTATGTTTTATGTACCATATTTCATAATTGTCAACTGTATGTTGTACTGTGCTCATAAAATCACACACCAAAACACGAACACAACACTGTTACTACACACAGGGCTGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
************************************************************************************************************.............................((((((..((((......................))))...))))))...*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
...............................................................................................................................................................................................................ATGAGATCTCCAAGGACT......................... 18 0 1 12.00 12 12 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATGAGATCTCCAAGGACTC........................ 19 0 1 5.00 5 5 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................GATGAGATCTCCAAGGACT......................... 19 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GACTCGAACGAGAAGATCTGGAAC..... 24 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTCGAACGAGAAGATCTGGAAC..... 22 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTCCAAGGACTCGAACGAGAAGATCT.......... 26 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAGGACTCGAACGAGAAGATCT.......... 22 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTCCAAGGACTCGAACGA.................. 18 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GGATGAGATCTCCAAGGACT......................... 20 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACTCGAACGAGAAGATCTGGAAC..... 23 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CGAGAAGATCTGGAACGAGA. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCAAGGACTCGAACGAGAAG.............. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................AGAAGATCTGGAACGAGAA 19 0 1 2.00 2 0 0 0 0 1 0 1 0 0 0
.......................................................................................................................................................................................................................TCCAAGGACTCGAACGAGAA............... 20 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................GCTGGGATGAGATCTCCAAGGACT......................... 24 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
............................................................................................................TGTACCATATTTCATAATTGTCAACTGTA................................................................................................................. 29 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................GGATGAGATCTCCAAGGACTCGAACG................... 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GACTCGAACGAGAAGATCTG......... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................TGGCTGGGATGAGATCTCCAAGGACTC........................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AGATCTCCAAGGACTCGAAC.................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GAACGAGAAGATCTGGAACGAGAA 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACGAGCA 25 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTCCAAGGACTCGAACGAGAA............... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTCCAAGGACTCGAACGAGAAGA............. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACGAGA. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................GTGGCTGGGATGAGATCTCCAAGGA........................... 25 2 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................ATGAGATCTCCAAGGACTCGAACGAGA................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GGGATGAGATCTCCAAGGACT......................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GGGATGAGATCTCCAAGGACTCGAACG................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGCAAGGACTCGTACGAG................. 18 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................ACTCGAACGAGAAGATCTGGAACG.... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................ATCTCCAAGGACTCGAACG................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................AGGACTCGAACGAGAAGATCTGGAAC..... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................TTGCTACACACAGGGCTGGGA.......................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................GAACGAGAAGATCTGGAAC..... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TCTCCAAGGACTCGAACG................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................ACTCGAACGAGAAGATCTGGAACGAGA. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATGAGATCTCCAAGGACTCGAACGAGG................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................GGGATGAGATCTCCAAGGACTCGA...................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................CTCGAACGAGAAGATCTGGAACGAGAA 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................TGGGGTATTTTTTGGTCTTTCTGGGCGG....................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAGGACTCGAACGAGAAGATCC.......... 22 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................GAGAAGATCTGGAACGAGA. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GGACTCGAACGAGAAGATCT.......... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................CCAAGGACTCGAACGAGAA............... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................TGTTACTACACACAGGGCTGGGATGAGA..................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................CCAAAACACGAACACAACACTG............................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................ATGAGATCTCCAAGGACTCGAACGA.................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................CTCCAAGGACTCGAACGAC................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................TGTACTGAGCTCATA............................................................................................... 15 1 4 0.25 1 0 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................AAAATCATACAGCAAAACTCGA.......................................................................... 22 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0
.CGTAACAGAACTGGCACG....................................................................................................................................................................................................................................... 18 3 20 0.10 2 0 0 0 2 0 0 0 0 0 0
.......AGAAATGACAAGAAAC................................................................................................................................................................................................................................... 16 1 14 0.07 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGCATTGTCTTAACTGTTCTTTGACCCCATAAAAAACCAGAAAGACCCGCCGACTGTTGGTTATAGCGTGGATTGCAGATGAGAGAAAAATAGAGAAAGATACAAAATACATGGTATAAAGTATTAACAGTTGACATACAACATGACACGAGTATTTTAGTGTGTGGTTTTGTGCTTGTGTTGTGACAATGATGTGTGTCCCGACCCTACTCTAGAGGTTCCTGAGCTTGCTCTTCTAGACCTTGCTCTT
***************************************************************.............................((((((..((((......................))))...))))))...************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
................................................................................................................................................................................TGTGTTGTGACAATGATG........................................................ 18 0 1 1.00 1 1 0 0 0 0 0
.....................................................................................................................................................................................................................AGATGTTCCTGAGCTTGG................... 18 2 3 0.33 1 0 1 0 0 0 0
............................................................................................................................................................................................ATGTTGGGAGTCCCGACCC........................................... 19 3 5 0.20 1 0 0 1 0 0 0
........................................................................................................................................................................................GACCATGATGTGTGT................................................... 15 1 9 0.11 1 0 0 0 1 0 0
......................................................................................................................................................................................GGGACCATGATGTGTGT................................................... 17 2 10 0.10 1 0 0 0 1 0 0
..................................................................................................................................................................................TATTGAGACAATGATGT....................................................... 17 2 11 0.09 1 0 0 1 0 0 0
.......................................................................................................AAAAAACATGGTATGAAG................................................................................................................................. 18 2 17 0.06 1 0 0 0 0 1 0
..........................................................................................................................................................................................TAATGATGTGTGTGCCG............................................... 17 2 19 0.05 1 0 0 0 1 0 0
.....................................................................................................................AAAATATTAACAGCTGAGAT................................................................................................................. 20 3 20 0.05 1 0 1 0 0 0 0
......GTCTTATCTGTTCTT..................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:12825477-12825726 - dsi_9722 ACGT------AACAGAATTG--------------------------ACA-AGAAACT-GG---GG-TATTTTTTGGTCTTTCTGG---GCGGCTGACA-----------------------------------AC--CAATATCGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACCA--------TATTTCATAATTG---TCAACTGTA----TGTTGTACTG----------------TGC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGAAC----ACAACACTG--T--TAC-TACACACAGGGCTGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
droSec2 scaffold_20:120622-120871 - ACGT------AACAGAATTG--------------------------ACA-AGAAACT-GG---GG-TATTTTTTGGTCTTTCTGG---GCGGCTGACA-----------------------------------AC--CAATATCGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACCA--------TATTTCATAATTG---TCAACTGTA----TGTTGTACTG----------------TGC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGAAC----ACAACACTA--T--TAC-TACACACAGGGCTGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
dm3 chrX:13488347-13488597 - ACGT------GATAGATTTG--------------------------ACA-AGTAACTAGG---GG-TATTTTTTGGTCTTTCTGG---GCGGCTGGCA-----------------------------------AC--CAATAACGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACCA--------TATTTCATAATTG---TCAACTGTA----TGTTGTACTG----------------TGC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGAAC----ACAACACTG--T--TAC-TACACACAGGGCTGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
droEre2 scaffold_4690:13393981-13394202 + GA---------------------------------------------CA-GGAAACT-GG---GT-TATTTTGTGGTCTTTCTGG---GCGGCTGACA-----------------------------------AC--CAATAAAGCACCTAACG-T----CAACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TCATGT---ACCA--------TTTTTCATAATTG---TCAACTGT--------------------------------GC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------ACACACGTAC----ACAACACTG--T--A----ACACACAGGGCTGGGATGAGATCTCCAAGGACTCTAACGAGAAGATCTGGAACGAGAA
droYak3 X:7771142-7771388 - ACGT------AACAGAATTG--------------------------ACA-AGAAACT-GG---GG-TATTTTCTGGTCTTTCTGG---GAGGCTGACA-----------------------------------AC--CAATAACGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACCA--------TATTTCATAATTG---TCAACTGTA----TGTTGTACTG----------------TGC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------ACACATGAAC----ACAACACTG--T--T----ACACACAGGGCTGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
droEug1 scf7180000408958:103962-104190 + ACAC------TACAGAAAGT--------------------------ACG---AGGCT----------------AGGCCATTTTGGGGGGAGGCTGACA-----------------------------------GCAGCAAGAACGCACCTAACG-T----CTACTATCT--------------TTTTTATCT----CTTTCTATGTT-------------TTATGT---ACTT--------TATCTCATA--------------------CGTTGTACTG----------------TAC--------------------------TCAT---TAAATCACACACCA------------------------------------------------------------------------------------------------------------AAAACACGATC----AAAACACTA--TT-G----AAACACAGGGCTGGGATGCCATCTCCAAGGACTCCAACGAGAAGATCTGGAACGAGAA
droBia1 scf7180000302421:561778-562022 - ATGT------AAGAGGTTTG---------------------------CA-AAAAGTT-GG---GT-AACTCATAGGTCATTGTGGG----GGCTGACA-----------------------------------AC--CAATAACGCATCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TATTTTATAATTG---TCAACTGTA----CGTTGTACTG----------------TGC--------------------------TCAT---TAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGATC----AAAACACTA--T--G----ACACACAGGGCTGGGATGCCATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
droTak1 scf7180000415812:34190-34428 + AGC-------AAAAGAA------------------------------CA---AAATTTGG----G-TTTTTATAGGCCATTTTGGG----GGCTGACA-----------------------------------AC--CAATAACTCATCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TTTTTTATAATTG---TCAACTGTA----CGTTGTACCG----------------TGT--------------------------TCAT---TAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACAATC----AAAACACTA--T--G----ACACACAGGGCTGGGACGCCATCTCCAAGGACTCGAGCGAGAAGATCTGGAACGAGAA
droEle1 scf7180000491006:33221-33488 + CCGT------CAAAGGATTGG------------------GAATTTGACATAGGAGCTTGGGGGGC-TATTCATAGGCCATTTCGAG----GGCTGACA-----------------------------------AC--CAGTAACGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TTTTTCATAATTG---CCAACTGTACACAACTTGTACCG----------------TGC--------------------------TCATTATTAAATCACCCATCA-------------------------------------------------------------------------------------------------------------AAACACGATC----AAAACACTA--T--GAC--ACACACAGGGCTGGGATGCCATCAGCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
droRho1 scf7180000777698:17928-18182 + ACAG-----TCAAAGAATTG--------------------------ACATAGGAGCTTGG---GGCTTTTCATAGGCCATTTCGGG----GGCTGACA-----------------------------------AC--CAATAACGCACCTAACG-T----CTACTCTCT--------------TTTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TTTTTCATAATCA---CCAACTGTGTACACCTTGTACCG----------------TGC--------------------------TCAT---TAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGATC----AAAACACTA--T--G----ACACACAGGGCTGGGACGCCATCTCCAAGGACTCCAGCGAGAAGATCTGGAACGAGAA
droFic1 scf7180000453549:139006-139257 - ACCT------CAAAGGTTTG--------------------------AAATAGGAACTTGG---GGCTATCCTTAGACCATTTCGGG----GGCTGACA-----------------------------------AC--CAATAACGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TATTTCATAATTG---ACAACCGTA----CATTGTACTG----------------TGC--------------------------TCAT----AAATCATACACCC-------------------------------------------------------------------------------------------------------------AAACACGATC----AACACACTA--A--AAAAAAAACACAGGGCTGGGAGACCATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
droKik1 scf7180000302344:1517579-1517825 + GAT--------------------------------------------------------------------------------AGG----AAACGACA-----------------------------------G----GATAAATCACCTAACG-T----CTACTCTTC---------------TCTTGTCT----CTTTCTATGTT--------------CATGTAA-ACTA--------TTTTTCATAATTG-TGTCAACCGTA--------------CTTGTGTCTT---GTGTGCTCTGCGTATC--GAATAACAAACAC-CCAT---TAAATCACAAAAAAAAAAAAAAACACCAACA---------------------------------------------------------------------------------CGTT--C----------GC-A----AAAACACTG--A--A---AACACACAGGGCTGGGATGAGATCAGCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
droAna3 scaffold_13248:2471096-2471318 - AGTT------GATAG----------------------------------------CTTGG----------------GTTTTC--A---GCAGCAGCC------------------------------------AT--TAAACATGCATCTAACC-A----CTACTCTTT-------------GTTTTTATCT----CTTTCTATGTT-------------TTATGTAAAACTA--------TATTTCATAATTG---TACACA-------AACTGTA---CTT-------------AAA--------------------------TCAT---TAAATCGAAAATTA---------CACCGCCA---------------------------------------------------------------------------------------------------CTA----AAAACACAC--A--C----ACGAACAGGGCTGGGATGAGATCAGCAAGGATGTGAACGAGAAGATCTGGAACGAGAA
droBip1 scf7180000396575:430198-430427 + AAA--------------------------------------------------------------------------------------------------------------------------------------C-ATTATGCATTTAACCATCTAACTACTCTTT-------------GTTTTTATCT----CTTTCTATGTT-------------TTATGTAA-ACTA--------TATTTCATAATTG---TCAACTGTA--------------CTTACGTGCGTGTC-------TGCGTATCTCGTATA----ACATTTCAT---AAAATCCTAT--CG-----ATTATATCACCA--------------------------------------------------------------------------------------------CGACA-----------CACACTAATTGGGAA-CACACACAGGGCTGGGATGAGATCACCAAGGATGTGAACGAGAAGATCTGGAACGAGAA
dp5 XL_group1e:3495183-3495452 + GGGG------GACGGGAA----------------------------------------------------------------TGGG----GACTGACA-----------------------------------G---CAATAACTCGCCTAACG-T----CTACTCTCT---------------TTTTATTTTTTTCTTTCTATGTT-------------TTATGTAA-ACTA--------TATTTCATAATTG---TCAACTGTA--------------CTTGTGTGCG---C-------TGCGTATC--G--TA----ACAT-TCAT---TAAA---------------------------------------------------------------------AACAATCCAACCAAAAACACGCCATCCCCAAAAATAAAACCCAAACACAAACACACGCTCGA-----ACACAA--A-------AACGACAGGGCTGGGATGCGATCACCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
droPer2 scaffold_17:432062-432329 + GGGG------GACGGGAA----------------------------------------------------------------TGGG----GACTGACA-----------------------------------G---CAATAACTCGCCTAACG-T----CTACTCTCT---------------TTTTATTTTTTTCTTTCTATGTT-------------TTATGTAA-ACTA--------TATTTCATAATTG---TCAACTGTA--------------CTTGTGTGCG---C-------TGCGTATC--G--TA----ACAT-TCAT---TAAA---------------------------------------------------------------------AACAACCCAACCAAAAACACGCCATCCCCAAAA--AAAACCCAAACACAAACACACGCTCGA-----ACACAA--A-------AACGACAGGGCTGGGATGCGATCACCAAGGACTCGAACGAGAAGATCTGGAACGAGAA
droWil2 scf2_1100000004590:4684318-4684550 + G----------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------TTCTTCT----CTTTCTATGTTAACTTTTTCTGTTT---------------------------TCAATG---TCAACCTA-----AATTGTTGTG----------------TGT--------------------------TCAA---TGTTTCA------------------------------TAATAACATTGCACTTGCGCCACTTACACACCTACAAACAACCACAACACACACACACACACCTACACC--TACACACATGCAAATGCAAACGCCCAC-----CCACC---T--G----ACTAACAGGGCTGGGATGAAATTTCCAAGGACTCCAGCGAGAAGATCTGGAATGAGAA
droVir3 scaffold_12970:10956602-10956889 - dvi_13952 AGTT------AACATATTTT-----------------------------------TTTGG---TA-TAT---TAGA-TTTGTTGG---GGGACC--AATTCACAATATT--------------CGTAGCT---AA--CGATAACACACTTAACG-T----CTACTCTCT----------------TTTATTT----CTTTCTATGTT-------------CTGTAT---ACTA--------TATTTTATAAATG---TCAACTGTA--------------TTTGCGTGTT---T-------TG--TA------------------------------------------------------CTATTTCGTCAC--------ATTCGCATAAACTAA-------------AACAAAACAAAAATATAAT---------AATTACACATAAACGCACA---------------CACACTT--T--G----GGACACAGGGCTGGGATGAGATCACCAAGGATGTAAACGAGAAGATCTGGAACGAGAA
droMoj3 scaffold_6473:10394598-10394922 + ATTAGACAGTC----AATTA-ATCAATCAGTCAGTCAGTCAGCTAGACA-GCTAGCCAGA---TA-TATAGA----------TGG-----GGTTGCCAGGCACACGACA--------------CGCGGTT---AA--CGAAATCACACTTAACG-T----CTGTTCTCTCTCTCTCTCTCTCTCTTTTATCT----CTTTCTATGTT-------------CTGTTC---ACTA--------TATTTTGTAATTGTTGTCAACTGTA--------------CTTGTGTG--------TGT--TCCGTA------------------------------------------------------CACGTTCGCCAC--------ACACGCATA--CTA-------------------------------------------------TATAAACACAAACATACGCTA-AACA-CACACTT--TGGG---GCGGCACAGGGCTGGGATGAGATCAGCAAGGATGTGAACGAGAAGATCTGGAACGAGAA
droGri2 scaffold_15203:2949610-2949911 - ACGT------A--------------------------------------------CT-GG---AA-TATT------ACTTATTGG---GGGATC--TATACACATTACCGTACATACATACAATGTAGCTAACGC--TAATATCACACTTGACG-T----CTATTCTCT----------------TTTATTT----CTTTCTATGTC-------------CTGTAC---ACTATATATATATATTTTATAATTG---TGAACTGTA--------------CTTGTGTGTT---T-------TG--AA------------------------------------------------------CTGTTTCGTCAT--------ACTTGCATAACCTTAAAAAAAACAAAAAACAAA--------------------------AAAACATACACACAAAC----GCA-------TACACTT--TC-G----GAACACAGGGCTTCGATGAGATCAGCAAGGATTGTAACGAGAAGATCTGGAACGAGAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACGT------AACAGAATTG--------------------------ACA-AGAAACT-GG---GG-TATTTTTTGGTCTTTCTGG---GCGGCTGACA-----------------------------------AC--CAATATCGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACCA--------TATTTCATAATTG---TCAACTGTA----TGTTGTACTG----------------TGC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGAAC----ACAACACTG--T--TAC-TACACACAGGGCTGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCTCCAAGGACT.........................18112.0012001200000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCTCCAAGGACTC........................1915.00500500000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCTCCAAGGACT.........................1914.00400400000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGAACGAGAAGATCTGGAAC.....2414.00401300000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAACGAGAAGATCTGGAAC.....2214.00400400000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCGAACGAGAAGATCT..........2613.00301200000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACTCGAACGAGAAGATCT..........2213.00300300000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCGAACGA..................1813.00300300000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGATCTCCAAGGACT.........................2013.00300300000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAACGAGAAGATCTGGAAC.....2313.00300300000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGATCTGGAACGAGA.2012.00200200000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCGAACGAGAAG..............2012.00200200000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATCTGGAACGAGAA1912.00200001000000100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGACTCGAACGAGAA...............2012.00201100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGATGAGATCTCCAAGGACT.........................2412.00200200000000000000
...............................................................................................................................................................................................................................TGT---ACCA--------TATTTCATAATTG---TCAACTGTA----....................................................................................................................................................................................................................................................................................2911.00100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGATCTCCAAGGACTCGAACG...................2611.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGAACGAGAAGATCTG.........2011.00100010000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCCAAGGACTCGAAC....................2011.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAGAAGATCTGGAACGAGAA2411.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCGAACGAGAA...............2111.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCGAACGAGAAGA.............2311.00100100000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACGAGA.2411.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCTCCAAGGACTCGAACGAGA................2711.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGATCTCCAAGGACT.........................2111.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGATCTCCAAGGACTCGAACG...................2711.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAACGAGAAGATCTGGAACG....2411.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAAGGACTCGAACG...................1911.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTCGAACGAGAAGATCTGGAAC.....2611.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAGAAGATCTGGAAC.....1911.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCAAGGACTCGAACG...................1811.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAACGAGAAGATCTGGAACGAGA.2711.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCTCCAAGGACTCGAACGAGG................2711.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGATCTCCAAGGACTCGA......................2411.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAACGAGAAGATCTGGAACGAGAA2711.00101000000000000000
........................................................T-GG---GG-TATTTTTTGGTCTTTCTGG---GCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACTCGAACGAGAAGATCC..........2211.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGATCTGGAACGAGA.1911.00100100000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCGAACGAGAAGATCT..........2011.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCGAACGAGAA...............1911.00100100000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--T--TAC-TACACACAGGGCTGGGATGAGA.....................................2811.00100000000100000000
.......................................................................................................................................................................................................................................................................................................................................................CCA-------------------------------------------------------------------------------------------------------------AAACACGAAC----ACAACACTG--..................................................................2211.00100100000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCTCCAAGGACTCGAACGA..................2511.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCGAACGAC.................1911.00100100000000000000
droSec2
ACGT------AACAGAATTG--------------------------ACA-AGAAACT-GG---GG-TATTTTTTGGTCTTTCTGG---GCGGCTGACA-----------------------------------AC--CAATATCGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACCA--------TATTTCATAATTG---TCAACTGTA----TGTTGTACTG----------------TGC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGAAC----ACAACACTA--T--TAC-TACACACAGGGCTGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATCTGGAACGAGA.1813.0030030
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCTCCAAGGACTCGAACGAGA................2711.0010010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGAAGATCTGGAACGA...1911.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGAACGAGAAGATCTGG........2111.0010010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCGAACGAGAAGAT............2411.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCTCCAAGGACT.........................1911.0010010
...........................................................................GTCTTTCTGG---GCGGCTGACA-----------------------------------A............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
dm3
ACGT------GATAGATTTG--------------------------ACA-AGTAACTAGG---GG-TATTTTTTGGTCTTTCTGG---GCGGCTGGCA-----------------------------------AC--CAATAACGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACCA--------TATTTCATAATTG---TCAACTGTA----TGTTGTACTG----------------TGC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGAAC----ACAACACTG--T--TAC-TACACACAGGGCTGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACACACAGGGCTGGGATGAGATC...................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCTCCAAGGACTCGAACGAGA................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCTCCAAGGACTCGAACGAG.................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCAAGGACTCGAACGAGA................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCTCCAAGGACTCGAACGAGA................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACGA...2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACTCGAACGAGAAGATCTGGAA......2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGATCTCCAAGG............................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCCAAGGACTCGAACG...................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAACGAGAAGATCTGG........2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCAAGGACTCGAACGAGAAGATC...........2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGACTCGAACGAGAAGATC...........2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACAGGGCTGGGATGAGAT....................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACG....2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--T--TAC-TACACACAGGGCTGG............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATCTGGAACGAGA.1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTCGAACGAGAAGATCTGG........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGATGAGATCTCCAAGGA...........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................TATTTTTTGGTCTTTCTGG---GCGGCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCAAGGACTCGAACGAGA................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---.............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--T--TAC-TACACACAGGGCTGGGATG........................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAAGGACTCGAACGAGA................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGATCTCCAAGGACTCGAACGA..................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCTCCAAGGACTCGAACGAGA................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACGAGAAGATCTGGAACGAGAA2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCCAAGGACTCGAACGA..................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCTCCAAGGACTC........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCTCCAAGGACTCGAACGA..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGATGAGATCTCCAAGGAC..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CGT------GATAGATTTG--------------------------ACA-AGTAACTAGG---GG-................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAATC....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCAAGGACTCGAAC....................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGATGAGATCTCCAAGGACT.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCTCCAAGGACTCGAACGAGAA...............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCGAACGA..................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACGAGAA2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCGAACGAG.................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCAAGGACTCGAACG...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCCAAGGACTCGAACGAGA................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCAAGGACTCGAACGAG.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--T--TAC-TACACACAGGGCTGGGA..........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........ATAGATTTG--------------------------ACA-AGTAACTAGG---GG-TA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTCGAACGAGAAGATCTGGAACG....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCTCCAAGGACTCGAACGAGA................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGGATGAGATCTCCAAGGACT.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGATGAGATCTCCAAGGACT.........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCTCCAAGGACTCGAAC....................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACGAGAAGATCTGGAAC.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAACGAGAAGATCTGGAACGA...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTCGAACGAGAAGATC...........2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCTCCAAGGACTC........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-TACACACAGGGCTGGGATGAGA.....................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAC-TACACACAGGGCTGGGATGAGATC...................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCCAAGGACTCGAACG...................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGATGAGATCTCCAAGGA...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTCGAACGAGAAGAT............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGATCTGGAACGAG..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTCGAACGAGAAGATCTATC.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACTG--T--TAC-TACACACAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAGAAGATCTGGAACGA...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........GATAGATTTG--------------------------ACA-AGTAACT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCTCCAAGGACTCGAACGAGAA...............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................T---ACCA--------TATTTCATAATTG---TCAACTGTA----....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GA---------------------------------------------CA-GGAAACT-GG---GT-TATTTTGTGGTCTTTCTGG---GCGGCTGACA-----------------------------------AC--CAATAAAGCACCTAACG-T----CAACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TCATGT---ACCA--------TTTTTCATAATTG---TCAACTGT--------------------------------GC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------ACACACGTAC----ACAACACTG--T--A----ACACACAGGGCTGGGATGAGATCTCCAAGGACTCTAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCTCCAAGGACT.........................1913.0030002010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGGATGAGATCTCC................................1812.0020000020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCTAACGAGAAGATCTGGAACGA...2611.0010100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGAGAAGATCTGGA.......1811.0010000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATCTCCAAGGACTCTAACGAGAAGAT............2811.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCTAACGAGAAGATCT..........2611.0010000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCCAAGGACTCTAACGAGAAGAT............2711.0010000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCTCCAAGGACT.........................1811.0011000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTAACGAGAAGATCTGGAACG....2211.0010100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTAACGAGAAGATCTGGAAC.....2211.0010100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGATCTGGAACGAGAA2011.0010000100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGAGAAGATCTGGAACGAGA.2411.0010100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGATGAGATCTCCAAGG............................2011.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACGAGAAGATCTGGAAC.....2011.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGATCTCCAAGGACT.........................2111.0010001000
...................................................................................................................................................................................................................................................................AACTGT--------------------------------GC--------------------------TCAT---AAAATCACA.............................................................................................................................................................................................................2111.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCTAACGAGAAGATCTGG........2611.0010001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGAAGATCTGGAACGAGA.2111.0010100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGATGAGATCTCCAAGGACT.........................2211.0011000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCTAACGAGAAGATCT..........2411.0010100000
droYak3
ACGT------AACAGAATTG--------------------------ACA-AGAAACT-GG---GG-TATTTTCTGGTCTTTCTGG---GAGGCTGACA-----------------------------------AC--CAATAACGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACCA--------TATTTCATAATTG---TCAACTGTA----TGTTGTACTG----------------TGC--------------------------TCAT---AAAATCACACACCA-------------------------------------------------------------------------------------------------------------ACACATGAAC----ACAACACTG--T--T----ACACACAGGGCTGGGATGAGATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACTCGAACGAGAAGATCTGGAACGAGA.3113.00300000000003
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCTCCAAGGACT.........................1912.00200100010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAAGGACTCGAACGAGAAGATCT..........2612.00220000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGATCTCCAAGGACTC........................2111.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACGAGAAGATCTGGAACGA...2311.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTCGAACGAGAAGATCT..........2311.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACGAGAAGATCTGGAACGAGA.2511.00100100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGACTCGAACGAGAAGATC...........2411.00110000000000
...........................................................................................GCTGACA-----------------------------------AC--CAATAACGCACCTAACG-C----..................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGATCTGGAACGAGAA2011.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACG....2111.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCGAACGAGAAGATCT..........2411.00100100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACTCGAACGAGAAG..............1811.00110000000000
......................................................................................................................................................................................................................................................................................................................................................ACCA-------------------------------------------------------------------------------------------------------------ACACATGAAC----ACAACACTG--T--...............................................................2411.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGAAGATCTGGAACGAGAA2311.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGATCTCCAAGGACTCGAACG...................2611.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGATGAGATCTCCAAGGACT.........................2411.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACGA...2211.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCGAACGAGAAGATCTG.........2511.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAGAAGATCTGGAACG....2011.00101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGA.......1811.00100100000000
droEug1
ACAC------TACAGAAAGT--------------------------ACG---AGGCT----------------AGGCCATTTTGGGGGGAGGCTGACA-----------------------------------GCAGCAAGAACGCACCTAACG-T----CTACTATCT--------------TTTTTATCT----CTTTCTATGTT-------------TTATGT---ACTT--------TATCTCATA--------------------CGTTGTACTG----------------TAC--------------------------TCAT---TAAATCACACACCA------------------------------------------------------------------------------------------------------------AAAACACGATC----AAAACACTA--TT-G----AAACACAGGGCTGGGATGCCATCTCCAAGGACTCCAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotal
No Reads
droBia1
ATGT------AAGAGGTTTG---------------------------CA-AAAAGTT-GG---GT-AACTCATAGGTCATTGTGGG----GGCTGACA-----------------------------------AC--CAATAACGCATCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TATTTTATAATTG---TCAACTGTA----CGTTGTACTG----------------TGC--------------------------TCAT---TAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGATC----AAAACACTA--T--G----ACACACAGGGCTGGGATGCCATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotal
No Reads
droTak1
AGC-------AAAAGAA------------------------------CA---AAATTTGG----G-TTTTTATAGGCCATTTTGGG----GGCTGACA-----------------------------------AC--CAATAACTCATCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TTTTTTATAATTG---TCAACTGTA----CGTTGTACCG----------------TGT--------------------------TCAT---TAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACAATC----AAAACACTA--T--G----ACACACAGGGCTGGGACGCCATCTCCAAGGACTCGAGCGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotal
No Reads
droEle1
CCGT------CAAAGGATTGG------------------GAATTTGACATAGGAGCTTGGGGGGC-TATTCATAGGCCATTTCGAG----GGCTGACA-----------------------------------AC--CAGTAACGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TTTTTCATAATTG---CCAACTGTACACAACTTGTACCG----------------TGC--------------------------TCATTATTAAATCACCCATCA-------------------------------------------------------------------------------------------------------------AAACACGATC----AAAACACTA--T--GAC--ACACACAGGGCTGGGATGCCATCAGCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotal
No Reads
droRho1
ACAG-----TCAAAGAATTG--------------------------ACATAGGAGCTTGG---GGCTTTTCATAGGCCATTTCGGG----GGCTGACA-----------------------------------AC--CAATAACGCACCTAACG-T----CTACTCTCT--------------TTTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TTTTTCATAATCA---CCAACTGTGTACACCTTGTACCG----------------TGC--------------------------TCAT---TAAATCACACACCA-------------------------------------------------------------------------------------------------------------AAACACGATC----AAAACACTA--T--G----ACACACAGGGCTGGGACGCCATCTCCAAGGACTCCAGCGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotal
No Reads
droFic1
ACCT------CAAAGGTTTG--------------------------AAATAGGAACTTGG---GGCTATCCTTAGACCATTTCGGG----GGCTGACA-----------------------------------AC--CAATAACGCACCTAACG-T----CTACTCTCT---------------TTTTATCT----CTTTCTATGTT-------------TTATGT---ACTA--------TATTTCATAATTG---ACAACCGTA----CATTGTACTG----------------TGC--------------------------TCAT----AAATCATACACCC-------------------------------------------------------------------------------------------------------------AAACACGATC----AACACACTA--A--AAAAAAAACACAGGGCTGGGAGACCATCTCCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotal
No Reads
droKik1
GAT--------------------------------------------------------------------------------AGG----AAACGACA-----------------------------------G----GATAAATCACCTAACG-T----CTACTCTTC---------------TCTTGTCT----CTTTCTATGTT--------------CATGTAA-ACTA--------TTTTTCATAATTG-TGTCAACCGTA--------------CTTGTGTCTT---GTGTGCTCTGCGTATC--GAATAACAAACAC-CCAT---TAAATCACAAAAAAAAAAAAAAACACCAACA---------------------------------------------------------------------------------CGTT--C----------GC-A----AAAACACTG--A--A---AACACACAGGGCTGGGATGAGATCAGCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotal
No Reads
droAna3
AGTT------GATAG----------------------------------------CTTGG----------------GTTTTC--A---GCAGCAGCC------------------------------------AT--TAAACATGCATCTAACC-A----CTACTCTTT-------------GTTTTTATCT----CTTTCTATGTT-------------TTATGTAAAACTA--------TATTTCATAATTG---TACACA-------AACTGTA---CTT-------------AAA--------------------------TCAT---TAAATCGAAAATTA---------CACCGCCA---------------------------------------------------------------------------------------------------CTA----AAAACACAC--A--C----ACGAACAGGGCTGGGATGAGATCAGCAAGGATGTGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGATGAGATCAGCAAGGAT..........................2211.001001000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAGAAGATCTGGAACGAGA.2311.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTGAACGAGAAGATCTG.........2011.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGAGAAGATCTGGAACGAGA.2511.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAAGGATGTGAACGA..................2011.001001000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATGTGAACGAGAAGAT............2011.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAAGGATGTGAACGAGAAGA.............2311.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCAGCAAGGATGTGAAC....................2311.001010000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAAGGATGTGAACGAGAAG..............2411.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAACGAGAAGATCTGGAA......2111.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGAGAAGATCTGGAAC.....2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAAGGATGTGAACGAGAAGATCT..........2911.001010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCAGCAAGGAT..........................1811.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACGAGAAGATCTGGAA......2011.001000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGATCAGCAAGGATGTGAACG...................2611.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAGAAGATCTGGAACGAGA.2211.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAGAAGATCTGGAAC.....1911.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCAGCAAGGATGTGAAC....................2111.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGGATGAGATCAGCAAGGATGT........................2611.001010000
droBip1
AAA--------------------------------------------------------------------------------------------------------------------------------------C-ATTATGCATTTAACCATCTAACTACTCTTT-------------GTTTTTATCT----CTTTCTATGTT-------------TTATGTAA-ACTA--------TATTTCATAATTG---TCAACTGTA--------------CTTACGTGCGTGTC-------TGCGTATCTCGTATA----ACATTTCAT---AAAATCCTAT--CG-----ATTATATCACCA--------------------------------------------------------------------------------------------CGACA-----------CACACTAATTGGGAA-CACACACAGGGCTGGGATGAGATCACCAAGGATGTGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotal
No Reads
dp5
GGGG------GACGGGAA----------------------------------------------------------------TGGG----GACTGACA-----------------------------------G---CAATAACTCGCCTAACG-T----CTACTCTCT---------------TTTTATTTTTTTCTTTCTATGTT-------------TTATGTAA-ACTA--------TATTTCATAATTG---TCAACTGTA--------------CTTGTGTGCG---C-------TGCGTATC--G--TA----ACAT-TCAT---TAAA---------------------------------------------------------------------AACAATCCAACCAAAAACACGCCATCCCCAAAAATAAAACCCAAACACAAACACACGCTCGA-----ACACAA--A-------AACGACAGGGCTGGGATGCGATCACCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGAGAA...............2112.0020200000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACGAGAAGATCTGGAACG....2211.0010000000001
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGAACGAGAAGATCTGGAAC.....2411.0010001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGAGAAGATCTG.........2711.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAAC.....2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATCTGGAACGAGA.1811.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACTCGAACGAGAAGATC...........2111.0010000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGCGATCACCAAGGACT.........................2111.0010000000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAA......1911.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCAAGGACTCGAACGAGA................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTCGAACGAGAAGAT............2111.0010000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGA..................1811.0010000000001
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCGAACGAGAAGATCT..........2411.0010010000000
droPer2
GGGG------GACGGGAA----------------------------------------------------------------TGGG----GACTGACA-----------------------------------G---CAATAACTCGCCTAACG-T----CTACTCTCT---------------TTTTATTTTTTTCTTTCTATGTT-------------TTATGTAA-ACTA--------TATTTCATAATTG---TCAACTGTA--------------CTTGTGTGCG---C-------TGCGTATC--G--TA----ACAT-TCAT---TAAA---------------------------------------------------------------------AACAACCCAACCAAAAACACGCCATCCCCAAAA--AAAACCCAAACACAAACACACGCTCGA-----ACACAA--A-------AACGACAGGGCTGGGATGCGATCACCAAGGACTCGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGA..................1814.004400000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAAC.....2013.003300000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGAACGAGAAGATCTGGAAC.....2313.003300000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACGAGAA2513.003300000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCGATCACCAAGGACT.........................1912.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGAGAAGATC...........2512.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGG..................1812.002200000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAGGACTCGAACGAGAA...............2012.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTCGAACGAGAAGATCT..........2312.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCAAGGACTCGAACGAGAAGAT............2712.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGAACGAGAAGATCTGGAAC.....2412.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGATGCGATCACCAAGGACTCG.......................2612.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGAGAA...............2112.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGAACGAGAAGATCTGGAAC.....2212.002200000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGAGAAGATCT..........2612.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGATGCGATCACCAAGGACT.........................2312.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCAAGGACTCGAACGA..................2112.002200000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGATGCGATCACCAAGGACTCGAAC....................2911.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCGATCACCAAGGACTCGAACGAGG................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCAAGGACTCGAACG...................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGAGG................2011.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCGAACGAGAAGATCTGGAACGAGA.2811.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTCGAACGAGAAGATCTGGAAC.....2811.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGCGATCACCAAGGACT.........................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGATCTGGAACGAGA.1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGGGATGCGATCACCAAGGA...........................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGACTCGAACGAGAAGAT............2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACGAGAAGATCTGGAACGAGG.2411.001100000
droWil2
G----------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------TTCTTCT----CTTTCTATGTTAACTTTTTCTGTTT---------------------------TCAATG---TCAACCTA-----AATTGTTGTG----------------TGT--------------------------TCAA---TGTTTCA------------------------------TAATAACATTGCACTTGCGCCACTTACACACCTACAAACAACCACAACACACACACACACACCTACACC--TACACACATGCAAATGCAAACGCCCAC-----CCACC---T--G----ACTAACAGGGCTGGGATGAAATTTCCAAGGACTCCAGCGAGAAGATCTGGAATGAGAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAAGGACTCCAGCG...................1813.00330000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAATTTCCAAGGAC..........................1812.00220000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAATTTCCAAGGACT.........................1912.00210010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAATTTCCAAGGACTCCA......................2212.00220000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTCCAGCGAGAA...............1811.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATTTCCAAGGACT.........................1811.00110000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCAGCGAGAAGATCTGGAATGAG..2511.00100010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGACTCCAGCGAGAAGATC...........2111.00110000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGACTCCAGCGAGAAGATCTGGAAT.....2611.00110000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGAGAAGATCTGGAAT.....1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATTTCCAAGGACTC........................1911.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGACTCCAGCGAGAAGATCTGGA.......2611.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTTCCAAGGACTCC.......................1811.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCCAGCGAGAAGATCTGG........2611.00110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCGAGAAGATCTGGA.......1811.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAAGGACTCCAGCGAGAAGATCT..........2611.00100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTCCAGCGAGAAGATCT..........1911.00100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAATTTCCAAGGACTCC.......................2111.00110000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAAATTTCCAAGGACTCCAG.....................2411.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGCGAGAAGATCTGG........1811.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAAGGACTCCAGCGAGAAGATCT..........2511.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGCCCAC-----CCACC---T--G----ACTAACA...................................................2311.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCCAAGGACTCCAGCGAGAAGA.............2511.00110000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCCAGCGAGA................1811.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGACTCCAGCGAGAAGAT............2211.00100010
droVir3
AGTT------AACATATTTT-----------------------------------TTTGG---TA-TAT---TAGA-TTTGTTGG---GGGACC--AATTCACAATATT--------------CGTAGCT---AA--CGATAACACACTTAACG-T----CTACTCTCT----------------TTTATTT----CTTTCTATGTT-------------CTGTAT---ACTA--------TATTTTATAAATG---TCAACTGTA--------------TTTGCGTGTT---T-------TG--TA------------------------------------------------------CTATTTCGTCAC--------ATTCGCATAAACTAA-------------AACAAAACAAAAATATAAT---------AATTACACATAAACGCACA---------------CACACTT--T--G----GGACACAGGGCTGGGATGAGATCACCAAGGATGTAAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCACCAAGGATGTAAACGAGAAGATC...........2814.004000000000000001000000000000000000000000000000000000000011010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACCAAGGATGTAAACGAGAAGATC...........2613.003000000000000000000000000000000000000000000000000000000002010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGAGAAGATCTGGAACGA...2313.003000200000000000001000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGATGTAAACGAGAAGATC...........2513.003000000000000000000000000000000000000000000000000000000000030000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATGTAAACGAGAAGATC...........2112.002000000000000000000000000000000000000000000000000000000001000100
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATCACCAAGGATGTAAACGAGAAGATC...........3312.002000000000000000000000000000000000000000000000000000000000020000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAGGATGTAAACGAGAAGATC...........2412.002000000000000000000000000000000000000000000000000000000000020000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGATGTAAACGAGAAGATC...........2012.002000000000000000000000000000000000000000000000000000000001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTAAACGAGAAGATCTGGAACGA...2711.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGATGAGATCACCAAGGATGT........................2511.001000100000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAACGAGAAGATCTGGA.......2011.001000000000000000000000000000000000000000000000000000000000000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGAGAAGATCTGGAAC.....2111.001000000000000000000000000000000000000000000100000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGAGAAGATCTGGAACG....2211.001000100000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCACCAAGGATGTAAACGAGAAGATC...........3011.001000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGAGAAGATCTGGAACGA...2111.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCACCAAGGATGTAAACGAGAAGATC...........2711.001000000000000000000000000000000000000000000000000000000000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCACCAAGGATGTAAAC....................2311.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGATCACCAAGGATGTAAACGAGAAGATC...........3211.001000000000000000000000000000000000000000000000000000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGGATGTAAACGAGAAGATC...........2311.001000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAAGGATGTAAACGAGAAGA.............2211.001000000000000000010000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGATGAGATCACCAAGGA...........................1911.001000100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGGGATGAGATCACCAAG.............................2111.001000000000000000000000000000000000000000000000000000000000001000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCACCAAGGATGTAAAC....................2211.001010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAAACGAGAAGATCTGGAAC.....2211.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGATCACCAAGGAT..........................1911.001010000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGATCACCAAGGATGTAAACGAGAAGATC...........3411.001000000000000000000000000000000000000000000000000000000000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATCTGGAACGAGA.1811.001000000000000000000000000000000000000000000000000000000000000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGATGTAAACGAGAAGATC...........2211.001000000000000000000000000000000000000000000000000000000001000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGATGTAAACGAG.................1911.001000000000000000001000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAAACGAGAAGATCTGGA.......1911.001000100000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGATGAGATCACCAAGGAT..........................2111.001000100000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGATGAGATCACCAAGG............................2111.001000100000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................ACTA--------TATTTTATAAATG---TCAACTGTA--------------TT........................................................................................................................................................................................................................................................................2811.001000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGATGTAAACGAGAAGAT............2411.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGATGTAAACGAGA................2011.001000100000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAAGGATGTAAACGAGAAG..............2211.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGAAGATCTGGAACGAGA.2011.001000000000000000001000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGGATGAGATCACCAAG.............................2011.001000000000000000000000000000000000000000000000000000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGTAAACGAGAAGATCTGGAAC.....2511.001010000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATCACCAAGGATGTAAACGAGA................2511.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
ATTAGACAGTC----AATTA-ATCAATCAGTCAGTCAGTCAGCTAGACA-GCTAGCCAGA---TA-TATAGA----------TGG-----GGTTGCCAGGCACACGACA--------------CGCGGTT---AA--CGAAATCACACTTAACG-T----CTGTTCTCTCTCTCTCTCTCTCTCTTTTATCT----CTTTCTATGTT-------------CTGTTC---ACTA--------TATTTTGTAATTGTTGTCAACTGTA--------------CTTGTGTG--------TGT--TCCGTA------------------------------------------------------CACGTTCGCCAC--------ACACGCATA--CTA-------------------------------------------------TATAAACACAAACATACGCTA-AACA-CACACTT--TGGG---GCGGCACAGGGCTGGGATGAGATCAGCAAGGATGTGAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAAGGATGTGAACG...................2012.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAAGGATGTGAACGAGAAG..............2511.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAAGGATGTGAACGAGAA...............2411.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGAACGAGAAGATCTG.........1811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATCAGCAAGGATGTG.......................1911.001000100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCAGCAAGGATGTGAACGA..................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAAGGATGTGAACGA..................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAAGGATGTGAACGAGAAGATC...........2711.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAAGGATGTGAACGAGAAGATCT..........2811.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAGAAGATCTGGAAC.....1911.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGATGTGAACGAGAA...............1711.001000100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAAGATCTGGAACGAGAA2011.001000010
droGri2
ACGT------A--------------------------------------------CT-GG---AA-TATT------ACTTATTGG---GGGATC--TATACACATTACCGTACATACATACAATGTAGCTAACGC--TAATATCACACTTGACG-T----CTATTCTCT----------------TTTATTT----CTTTCTATGTC-------------CTGTAC---ACTATATATATATATTTTATAATTG---TGAACTGTA--------------CTTGTGTGTT---T-------TG--AA------------------------------------------------------CTGTTTCGTCAT--------ACTTGCATAACCTTAAAAAAAACAAAAAACAAA--------------------------AAAACATACACACAAAC----GCA-------TACACTT--TC-G----GAACACAGGGCTTCGATGAGATCAGCAAGGATTGTAACGAGAAGATCTGGAACGAGAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:02 PM