ID:

dsi_9707

 Coordinate:

3r:20195919-20195976 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.7 -4.5 -3.8

Flybase annnotation

three_prime_UTR [3r_20195854_20196623_+]; exon [3r_20195841_20196623_+]

No Repeatable elements found

Sense Strand Reads

##############################################################################################################################################################
AGCGACGAAATCATCGCGTTCAGCAGCTCATTCCATAGATTTCTGCATGCGTATACGTTACTTGTAAACCGATCGATTAAATTCTCTGATTTATGCGTGCCCTTTTAGATCGCCGCGGCCGACAGCCTGTTAAATCTTCAAAGAATATCTGAGCACGT
**************************************************.......................((..((((((....))))))..))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M024
male body		 SRR902008
ovaries
 M053
female body
 SRR618934
dsim w501 ovaries
 M025
embryo
 M023
head
 SRR553488
RT_0-2 hours eggs
................................................................TAAACCGATCGATTAAATTCTCTGAT.................................................................... 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
....................................................................................TCTGATTTATGCGTGCCCTTTTAGA................................................. 25 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0
...............................TCCATAGATTTCTGCATGCGTATACGT.................................................................................................... 27 0 1 3.00 3 1 0 1 0 1 0 0 0 0 0
.........................................................TTACTTGTAAACCGATCGATTAAA............................................................................. 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.................................................................................TTCTCTGATTTATGCGTGCCC........................................................ 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
...............................TCCATAGATTTCTGCATGCGTATAC...................................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
.................................................................................TTCTCTGATTTATGCGTGCCCTTTT.................................................... 25 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
.................................................................................................TGCCCTTTTAGATCGCCGCGGCCGACA.................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
....................................................ATACGTTACTTGTAAACC........................................................................................ 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........................................TTCTGCATGCGTATACGTTA.................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................TCTGATTTATGCGTGCCCTTTTAGAT................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................CGTTACTTGTAAACCGATCGATTAA.............................................................................. 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................GATTCTCTGATTTATGCGTGC.......................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................AAACCGATCGATTAAATTCTCTGA..................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................TAAATTCTCTGATTTATGCGTGCCCT....................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................AATTCTCTGATTTATACGTGCCCTTTT.................................................... 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.................................................................................................................................TTAAATCTTCAAAGAATATCTGAGCACG. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................TCTGCATGCGTATACGT.................................................................................................... 17 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................TTTTAGATCGCCGCGGCCGACAGCC............................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................TTCCATAGATTTCTGCATGCGTATACGTT................................................................................................... 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................TACTTGTAAACCGATCGATTAAAT............................................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................AATTCTCTGATTTATGCGTGCCCTTTT.................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................TTTAGATCGCCGCGGCCGACAGCCTGT............................ 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................CCCTTTTAGATCGCCGCGGCCA..................................... 22 1 1 1.00 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................TTATGCGTGCCCTTTTAGATCGCC............................................ 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................TGTAAACCGATCGATTAAATTCTCTGAT.................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................AGATCGCCGCGGCCGACAGCCTGT............................ 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................CTTCAAAGAATATCTGAGCG... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................TCGTATTTATGCGTGCCCTTTTAGA................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................TTAAATTCTCTGATTTATGCGTGCCC........................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................TGTAAACCGATCGATTAAATTCTCTGA..................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........CATCGCGTTCAGCAGCTCATTCC............................................................................................................................ 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................CTCTGATTTATGCGTGCCCTTTTAG.................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................TGCCCTTTTAGATCGCCGCG......................................... 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................TCAAAGAATATCTGAGCA... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................CTTCAAAGAATATCTGAGCA... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................TCTCTGATTTATGCGTGCCCT....................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................TCATTCTATAGATTTCTGG................................................................................................................ 19 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

TCGCTGCTTTAGTAGCGCAAGTCGTCGAGTAAGGTATCTAAAGACGTACGCATATGCAATGAACATTTGGCTAGCTAATTTAAGAGACTAAATACGCACGGGAAAATCTAGCGGCGCCGGCTGTCGGACAATTTAGAAGTTTCTTATAGACTCGTGCA
**************************************************.......................((..((((((....))))))..))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 O001
Testis
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
TCGTTTCTTTAGTGGCGCAAG......................................................................................................................................... 21 3 2 5.00 10 0 2 5 2 0 0 1 0 0 0 0
..................................TATCTAAAGACGTACGCATAT....................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................TGGCTGTCGGACAATTTAGAAG................... 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................CGGCTGTCGGACAATTTAGAA.................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................GCTGTCGGACAATTTAGAAGT.................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...............................................................CATTTGGCTAGCTAATTTAA........................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................ATTTGGCTAGCTAATTTAAGA......................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..........................................GACGTACGCATATGCAATGAA............................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................................GCTAGCTAATTTAAGAGACTA.................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................GGCTGTCGGACAATTTAGAAG................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................................................TGGCTAGCTAGTTTAAGAGACTAAATA................................................................ 27 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................GCGGCGCCGGCTGTCGGACAA........................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................CGTCGAGTAAGGTATCTAAAGAC................................................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................GCTGTCGGACAATTTAGAAG................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
TCGTTTCTTTAGTGGCGCAA.......................................................................................................................................... 20 3 11 0.82 9 0 1 0 5 0 1 0 0 1 0 1
.CGTTTCTTTAGTGGCGCAAG......................................................................................................................................... 20 3 8 0.50 4 0 3 0 0 0 0 0 0 1 0 0
...................................................................................................................GCTGGCTGTCGGACACTT......................... 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................ATCGGGCAATTTAGAAG................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1 0
..............................................TACGCATAGGCAATGAG............................................................................................... 17 2 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................GCAGGGGAAGATCTA................................................ 15 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
TCGTTTCTTTAGTGGCGCA........................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:20195869-20196026 + dsi_9707 AGCGACGA------AAT---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--GTATAC-----GT--------------T------------------------------A-CT-T-------GTAAACCGATCGATTAAA-T---------------------------TCTCTGA-T----TTATGCGTGCCCTTTTAGATCGCCGCGGCCGACAGCCTGTTA----------AATC-TT-------CAAAGAATATCTGAGCACGT
droSec2 scaffold_0:21027770-21027927 + AGCGACGA------AAT---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--GTAAAC-----GT--------------T------------------------------A-CT-T-------GTAAACCGATCGATTAAA-T---------------------------TCTCTGA-T----TTATGCGTGCCCTTTTAGATCGCCGCGGCCGACAGCCTGTTA----------AATC-TT-------CAAAGAATATCTGAGCACGT
dm3 chr3R:20679975-20680133 + AGCGACGA------AAT---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--GTAAACTAAACGT--------------T------------------------------A-CT-T-------GTAAACCAATCGATTAAGAA---------------------------TTTCTGA-T----T-----GTGCCCTTTTAGATCGCCGCGGCCGACAGCCTGTTA----------AATC-TT-------CAAAGAATATCTGATCACGT
droEre2 scaffold_4820:7376244-7376400 - AGCGACGA------AAT---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--ATAAAC-----GT--------------T------------------------------A-GT-T-------GTAAACCGATCGATTAAA-T---------------------------TCTCTAA-T----TTATGCGTGCCCTTTTAGATCGCCGCGACCGACAGCCTGTTAG----------ATC-TT-------CA-ATAATATCTGAGCACGT
droYak3 3R:25817152-25817308 - AGCGACGA------AAG---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--GTAAAC-----GT--------------T------------------------------A-GT-T-------GTGAACCGATCGATTAAA-T---------------------------TCTCTGA-T----TTATGCGTGCCCTTTTAGATTACCGCGACCGACAGCCTGTTA----------AATC-TT-------CA-AGAATATCTGAGCACAT
droEug1 scf7180000409881:412639-412824 + AGCGACGA------CAT---CATCGCGTTC--AGC---TGCTCATTCCACAGACTTCTGCATGC--ATAAAT-----GT--------------T-----------CATAGTTTTCAAAGTAGATA-GTTT-------GTAAACAGATCGATTAAA-A---------------------------TCTTTGA-C----TTATGCGTACCCTTTTAGGTTGCCGCGACCGACGGCCTGTTAATC-AGTGGAAATC-TT-------CA-AGAAAATCTCAGCCTAT
droBia1 scf7180000302402:4469736-4469918 + AGCGACGA------CAT---CATCGCGTTC--AGC---TGCTCATTCCACAGATTTCTGCATGC--CTAATC-----GT--------------T------------ACAGTT-TCAAAGTAGTTA-GT-C-------GTTAATCGATCGATTAAA-G---------------------------CCTCTGA-T----TTATGCGTGCCCTTTTAGGTTGCCGCGACCGACGGCCTGTTAGCC-CGGGAAAATC-TG-------GA-ACTAAATCTGAGGCCAT
droTak1 scf7180000415310:444327-444511 - AGCGACGA------CAT---CATTGCGTTC--AGC---TGCTCATTCCACAGATTTCTGCATGC--ATAAAC-----GT--------------T-----------AACAGTTTTCAAAGTAGTTA-CC-T-------ATAAATCGATCGACTAAA-A---------------------------TCTCTGA-T----TTATGCGTGCCCTTTTAGGTTGCCGCGTCCGACGGCCTGTTAGTC-AGTGGAAATC-TG-------CA-AGCAAATCTGAGTCTAT
droEle1 scf7180000491194:758768-758937 + AGCGAC--------------------------------TGCTCATTCCACAGATTTCCGCATGCATGCAAAC-----TC--------------T-----------TACAGTTCTTAAAGTAGTTA-GT-G-------GTAAAGCGATCGATAAAAAC---------------------------CCTCTGA-T----TTATGCGAACCCTTTTAGGTTGCCGCTGCCGACGGCCTGTTAGTC-AGCGGAAATC-TT-------CG-AGAAAATCTGAGCACAT
droRho1 scf7180000779488:796832-797020 + AGCGACGA------CAT---CATCGTGTTC--AAC---TGCTCATTCCACAGATTTCTGCATGC--ATTAAC-----GT--------------T-----------TACAGTTCTTAAAGTAGTTA-GT-T---GGTGGTAAACCGATCCATTAAA-C---------------------------ACCCTGA-T----TTATGCGTGCCCTTTTAGGTTGCCGCTGCCGACGGCCTGTTAGTC-AGTGGAACTC-CT-------CG-AGAAAATCTGAGCACGT
droFic1 scf7180000454106:1620897-1621071 - AGCGACGA------TAT---CATCGCGTTC--AGC---TGCTCATTCCACAGATTTCTGCATGC--ATAAAC-----GT---TTTAAAAATATT------------------------------A-GT-A-------GTATACAGTTCGATTCAA------------------------------CTCTGA-T----TTATGCGTGCCCTTTTAGGTTGCCGCGGCCGACGGCCTGTTAGTC-AGTGGAAGTC-TC-------CA-AGAAAATCTGAGCCCGT
droKik1 scf7180000301874:7687-7883 - AGCGGAGC------CATCATCATCGTGTTC--AGCTCGTGTTCATTCCACAAAACTATGCATGC--ATCCGC-----GT--------------T-----------AGCAGTTTT-GATGTAGTTA-GTTTGCTA---GCGTTCCCATTAATC---GC---------------------------TCTCTGA-TATACATGTGTGTGCCCTTTTAGGTTGCCGCCGCCGACGGCCTGTTAGTC-AGTGGACATC-TT-------CA-AGAAAATCTAAACAAAT
droAna3 scaffold_13340:8179068-8179235 - AGAGGGGT------CATC--CAACGTGTTC--AAC---TGCTCATTCCTAAGATTTCTGCATGC--AA-------------------------------------------------TGTAGTTAAGT-T---A---GTACTCAATTTAATT---GC---------------------------TCTCTGA-C----CTGTATATGCCCTTTTAGGTTGCCGCCGCCGACGGCTTGTTAGTCCAGAGGGAATCCTT-------CA-CAAAGATCTAAGACCG-
droBip1 scf7180000396708:662964-663128 + AGCGGGGT------CATC--CAACGTGTTC--AAC---TGCTCATTCCTAAGATTTCTGCATGC--AA-------------------------------------------------TGTAGTTAAGT-T---A---GCAGCCAATTTAATT---GC---------------------------TCTCTGA-A----CTGTATATGCCCTTTTAGGTTGCCGCCGCCGACGGCATGTTAGTCCAGAGGAAATCCTT-------CA-CGAAGATCTA----CGA
dp5 2:22424-22626 + AGCGACGT------CAT---CATCATGTTG--AGC---GACTCATTCCCAAAATATCTGCATGC--T-AAACTTT------A-----------------TTCGACTGAAGTTTTAAGAGTAGTTA-GC-T-------ATTAATCGGTCGATCGAA-C--------------------CACCTTCTCTTTGA-C----ACGTGTGGGCTCTTCTAGGTTACCGCCCCCGACGGCCTGTTAGTC-AGCGGAT-C-ACGCGCGCAGCC-AGAAGATCTAGGCATA-
droPer2 scaffold_7:2812584-2812786 + AGCGACGT------CAT---CATCATGTTG--AGC---GACTCATTCCCAAAATATCTGCATGC--T-AAACTTT------A-----------------TTCGACTGAAGTTTTAAGAGTAGTTA-GC-T-------ATTAATCGGTCGATCGAA-C--------------------CACCTTCTCTTTGA-C----ACGTGTGTGCTCTTCTAGGTTACCGCCCCCGACGGCCTGTTAGTC-AGCGGAT-C-GCGCGCGCAGCC-AGAAGATCTAGGCATA-
droWil2 scf2_1100000004921:1765803-1765973 - GGTTCCTATAGT--TTC---CATCTTCATA--ACC---AGCTAAATCAT----AATCTGCATGC--AAAAAT-----T-----------------------------------------------------------GTGCTCAACTTGAAT---TC--------------------TTTTCTGCCTCTAACT----TTTTGTGAA-TTTTCCAGACTACCACGGCCCACAGCTTGTTAGTA-AATAGAA-C-ATCCAAGACTCG-AAAAGAAACAGATTTAA
droVir3 scaffold_13047:485406-485581 + AAAAACCA------CAA---GAGCGCCTTC--ATT---ACATAACTCT---AAGCTGTGCATGC--AA--TT-----CTCACTTCAAAATATTTAGTGAT----------------------------------------------CCGATTAAA-ATTTATAATTAACTTTTGTATT------ACCCTCA-T----TTA-ACTTGCAATTCTAGATTGCCACCGCCAACGGCCTGTTAGTG-G-CAGGA-C-AAT------------------CGGGAAGCT
droMoj3 scaffold_6540:4361548-4361731 + TGCAGCAAAAGCAACCT---GAACGCATTCATAAC---TGAACTTTCA-----TCTGTGCATGC--AA-TTCTCA------ATTCAATATAATTAGTGGC-----------------------------T-------CTATAGAAATGT-ATAAA-T---------------------------AACCTTA-T----TTG-AATTGCAATTCTAGACTGCCAATGCCAACTGCTTGTTAGGA-G-CAGG-ATA-TTCGGGAAGCT----CCACTTGTTAACTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGCGACGA------AAT---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--GTATAC-----GT--------------T------------------------------A-CT-T-------GTAAACCGATCGATTAAA-T---------------------------TCTCTGA-T----TTATGCGTGCCCTTTTAGATCGCCGCGGCCGACAGCCTGTTA----------AATC-TT-------CAAAGAATATCTGAGCACGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................TAAACCGATCGATTAAA-T---------------------------TCTCTGA-T----......................................................................................2614.00400000040000000000
..........................................................................................................................................................................................TCTGA-T----TTATGCGTGCCCTTTTAGA...................................................................2514.00400000022000000000
.............................................TCCATAGATTTCTGCATGC--GTATAC-----GT--------------..............................................................................................................................................................................................2713.00300000010000011000
..............................................................................T--------------T------------------------------A-CT-T-------GTAAACCGATCGATTAAA-...............................................................................................................................2412.00200000002000000000
............................................................................................................................................................T---------------------------TCTCTGA-T----TTATGCGTGCCC..........................................................................2112.00200000000000002000
.............................................TCCATAGATTTCTGCATGC--GTATAC-----..............................................................................................................................................................................................................2512.00200000000000002000
............................................................................................................................................................T---------------------------TCTCTGA-T----TTATGCGTGCCCTTTT......................................................................2512.00200000010000001000
............................................................................................................................................................................................................TGCCCTTTTAGATCGCCGCGGCCGACA....................................................2712.00200000002000000000
....................................................................ATAC-----GT--------------T------------------------------A-CT-T-------GTAAACC...........................................................................................................................................1811.00100100000000000000
......................................................TTCTGCATGC--GTATAC-----GT--------------T------------------------------A-.............................................................................................................................................................2011.00100000000000001000
..........................................................................................................................................................................................TCTGA-T----TTATGCGTGCCCTTTTAGAT..................................................................2611.00100000010000000000
.......................................................................C-----GT--------------T------------------------------A-CT-T-------GTAAACCGATCGATTAA.................................................................................................................................2511.00100010000000000000
...........................................................................................................................................AAACCGATCGATTAAA-T---------------------------TCTCTGA-...........................................................................................2411.00101000000000000000
.......................................................................................................................................................TAAA-T---------------------------TCTCTGA-T----TTATGCGTGCCCT.........................................................................2611.00100000010000000000
............................................................................................................................................................................................................................................TTA----------AATC-TT-------CAAAGAATATCTGAGCACG.2811.00100000010000000000
.......................................................TCTGCATGC--GTATAC-----GT--------------..............................................................................................................................................................................................1711.00100000000001000000
.................................................................................................................................................................................................................TTTTAGATCGCCGCGGCCGACAGCC.................................................2511.00100000001000000000
............................................TTCCATAGATTTCTGCATGC--GTATAC-----GT--------------T------------------------------...............................................................................................................................................................2911.00100000001000000000
.............................................................................................T------------------------------A-CT-T-------GTAAACCGATCGATTAAA-T---------------------------...................................................................................................2411.00100000010000000000
.........................................................................................................................................................AA-T---------------------------TCTCTGA-T----TTATGCGTGCCCTTTT......................................................................2711.00100000000000010000
..................................................................................................................................................................................................................TTTAGATCGCCGCGGCCGACAGCCTGT..............................................2711.00100000010000000000
..............................................................................................................................................................................................................CCCTTTTAGATCGCCGCGGCCA.......................................................2211.00110000000000000000
.....................................................................................................................................................................................................TTATGCGTGCCCTTTTAGATCGCC..............................................................2411.00100000010000000000
.................................................................................................................................T-------GTAAACCGATCGATTAAA-T---------------------------TCTCTGA-T----......................................................................................2811.00100000001000000000
.....................................................................................................................................................................................................................AGATCGCCGCGGCCGACAGCCTGT..............................................2411.00100000000001000000
............................................................................................................................................................................................................................................................C-TT-------CAAAGAATATCTGAGCG...2011.00101000000000000000
......................................................................................................................................................TTAAA-T---------------------------TCTCTGA-T----TTATGCGTGCCC..........................................................................2611.00100000001000000000
.................................................................................................................................T-------GTAAACCGATCGATTAAA-T---------------------------TCTCTGA-...........................................................................................2711.00100000010000000000
....................CATCGCGTTC--AGC---AGCTCATTCC...........................................................................................................................................................................................................................................2311.00100000010000000000
.........................................................................................................................................................................................CTCTGA-T----TTATGCGTGCCCTTTTAG....................................................................2511.00100000010000000000
............................................................................................................................................................................................................TGCCCTTTTAGATCGCCGCG...........................................................2011.00100000000010000000
...............................................................................................................................................................................................................................................................T-------CAAAGAATATCTGAGCA...1811.00100010000000000000
............................................................................................................................................................................................................................................................C-TT-------CAAAGAATATCTGAGCA...2011.00101000000000000000
........................................................................................................................................................................................TCTCTGA-T----TTATGCGTGCCCT.........................................................................2111.00100000000000001000
droSec2
AGCGACGA------AAT---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--GTAAAC-----GT--------------T------------------------------A-CT-T-------GTAAACCGATCGATTAAA-T---------------------------TCTCTGA-T----TTATGCGTGCCCTTTTAGATCGCCGCGGCCGACAGCCTGTTA----------AATC-TT-------CAAAGAATATCTGAGCACGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
................T---CATCGCGTTC--AGC---AGCTCA...............................................................................................................................................................................................................................................2011.0010010
.......................................................................................................................................................................................................................................GCCTGTTA----------AATC-TT-------CAAAGAAT............2211.0010100
.........................CGTTC--AGC---AGCTCATTCC...........................................................................................................................................................................................................................................1811.0010010
dm3
AGCGACGA------AAT---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--GTAAACTAAACGT--------------T------------------------------A-CT-T-------GTAAACCAATCGATTAAGAA---------------------------TTTCTGA-T----T-----GTGCCCTTTTAGATCGCCGCGGCCGACAGCCTGTTA----------AATC-TT-------CAAAGAATATCTGATCACGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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................................................................................................................................................................................................................CTTTTAGATCGCCGCGGCCGACAGCC.................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................TTAAGAA---------------------------TTTCTGA-T----T-----GTGCCCTTTATC....................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCCATAGATTTCTGCATGC--GT.......................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........................................................................................................................................................................................TTCTGA-T----T-----GTGCCCTTTTAGATCGCCG.............................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................CCATAGATTTCTGCATGC--GTAAAC...................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..CGACGA------AAT---CATCGCGTTC--AGC---AGCTC................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................ATAGATTTCTGCATGC--GTAAACT..................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................TTC--AGC---AGCTCATTCCATAGA......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GACGA------AAT---CATCGCGTTC--AGC---AGCT.................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................TTTAGATCGCCGCGGCCGACAG...................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
....................................................................................................................................................................................................................TAGATCGCCGCGGCCGACAGCCT................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................ACAGCCTGTTA----------AATC-TT-------CAAAGAATAT..........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................GGCCGACAGCCTGTTA----------AATC-TT-------CA..................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................TAGATTTCTGCATGC--GTAAACTAAACG.............................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................TTA----------AATC-TT-------CAAAGAATATCTGATCACGT2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...GACGA------AAT---CATCGCGTTC--AGC---AGCTCA...............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................T----T-----GTGCCCTTTTAGATCGCCGCG...........................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TTC--AGC---AGCTCATTCCATAGC......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GATTTCTGCATGC--GTAT.....................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GT--------------T------------------------------A-CT-T-------GTAAACCAATCGATTAA.................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................TTAGATCGCCGCGGCCGACAGCC.................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TGCCCTTTTAGATCGCCGCGGCCGT......................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................A-CT-T-------GTAAACCAATCGATTAAGAA---------------------------TTTC...............................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TAAGAA---------------------------TTTCTGA-T----T-----GTGCCCTT........................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................GGCCGACAGCCTGTTA----------AATC-TT-------CAAAGAA.............2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TGTTA----------AATC-TT-------CAAAGAATATCTGATCA...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................GCCGACAGCCTGTTA----------AATC-TT-------CAAAGAATA...........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AAACCAATCGATTAAGAA---------------------------TTTCTGA-T----......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AACCAATCGATTAAGAA---------------------------TTTCTGA-...........................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GA------AAT---CATCGCGTTC--AGC---AGCTCATTC............................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................TTCTGCATGC--GTAAACTAAACGT--------------T------------------------------A-CT-T-------G.................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................T----T-----GTGCCCTTTTAGATCGCCGCGGCCGAC.....................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................AACTAAACGT--------------T------------------------------A-CT-T-------GTAAACCAATCGAT....................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................TA----------AATC-TT-------CAAAGAATATCTG.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CGATTAAGAA---------------------------TTTCTGA-T----......................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CCTTTTAGATCGCCGCGGCCGACAGCCTGT..............................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................AATC-TT-------CAAAGAATATCTGATCACGT2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................TTAAGAA---------------------------TTTCTGA-T----T-----GTGCCCTTT.......................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................TCTGCATGC--GTAAACTAAACGT--------------..............................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................................................................................................................................CTTTTAGATCGCCGCGGCCGACAGC..................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................T--------------T------------------------------A-CT-T-------GTAAACCAATCGATTAAGAA---------------------------TT.................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................TTCTGA-T----T-----GTGCCCTTTTAG....................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................TTTCTGCATGC--GTAAACTAAACGT--------------G------------------------------...............................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................T-------GTAAACCAATCGATTAAGAA---------------------------TTTCTG.............................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.........................................TCATTCCATAGATTTCTGCATGC--G........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................................................................................................................................TTTTAGATCGCCGCGGCCGAC.....................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
..........................................................GCATGC--GTAAACTAAACGT--------------T------------------------------A-CT-..........................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............................................................................................................................................................................................TGA-T----T-----GTGCCCTTTTAGATCG................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....ACGA------AAT---CATCGCGTTC--AGC---.....................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................ACCAATCGATTAAGAA---------------------------TTTCTGA-T----T-----GTGC............................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TCGATTAAGAA---------------------------TTTCTGA-...........................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ATTCCATAGATTTCTGCATGC--GTAAACTAA................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TAAGAA---------------------------TTTCTGA-T----T-----GTGCCCTTTTAGATC.................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................ATCGATTAAGAA---------------------------TTTCTGA-T----......................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................TGCCCTTTTAGATCGCCGCGGC.........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................TGC--GTAAACTAAACGT--------------T------------------------------A-CT-T-------GTAAAC............................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................CGT--------------T------------------------------A-CT-T-------GTAAACCAATCGATT...................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCCATAGATTTCTGCATGC--GTAAACTA.................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A------AAT---CATCGCGTTC--AGC---AGCT.................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
....................................................ATTTCTGCATGC--GTAAACTAAACGT--------------..............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................CTCATTCCATAGATTTCTGCATGC--GTAAAA...................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................CTTTTAGATCGCCGCGGCC........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ATCGCGTTC--AGC---AGCTCATT.............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................TCTGA-T----T-----GTGCCCTTTTAGATCGCCGCG...........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................TAGATTTCTGCATGC--GTAAACT..................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ATTCCATAGATTTCTGCATGC--GTAAAC...................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................T------------------------------A-CT-T-------GTAAACCAATCGATTAAGAA---------------------------TTTC...............................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................ATTCCATAGATTTCTGCATGC--GTAAACT..................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................CGTTC--AGC---AGCTCATTCCATAGATT....................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................CAGCCTGTTA----------AATC-TT-------CAAAGAATATC.........2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................TAAACGT--------------T------------------------------A-CT-T-------GTAAACC...........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................TGC--GTAAACTAAACGT--------------T------------------------------A-CT-T-------GTAAACCAA.........................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................TCCATAGATTTCTGCATGC--GTAAACTAA................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TAAGAA---------------------------TTTCTGA-T----T-----GTGCCCTTTTAG....................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................A-CT-T-------GTAAACCAATCGATTAAGAA---------------------------TT.................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................CATTCCATAGATTTCTGCATGC--GTAAAC...................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......A------AAT---CATCGCGTTC--AGC---AGC..................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................GTAAACCAATCGATTAAGAA---------------------------TTTCTGA-...........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................A-T----T-----GTGCCCTTTTAGATCGCCGCGGC.........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................T-------GTAAACCAATCGATTAAGAA---------------------------TTTCTGA-T----G-----................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................CCATAGATTTCTGCATGC--GTAAACTAAAC..............................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................TAAACCAATCGATTAAGAA---------------------------TTTCTG.............................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
AGCGACGA------AAT---CATCGCGTTC--AGC---AGC..................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.............................................................................................................................................ACCAATCGATTAAGAA---------------------------TTTCTGA-T----T-----G...............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................T----T-----GTGCCCTTTTAGATCGCCGCGGCCA.......................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................T----T-----GTGCCCTTTTAGATCGCCGCGGCC........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................GCCGCGGCCGACAGCCTGT..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CCTTTTAGATCGCCGCGGCCGACAGCCTG...............................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droEre2
AGCGACGA------AAT---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--ATAAAC-----GT--------------T------------------------------A-GT-T-------GTAAACCGATCGATTAAA-T---------------------------TCTCTAA-T----TTATGCGTGCCCTTTTAGATCGCCGCGACCGACAGCCTGTTAG----------ATC-TT-------CA-ATAATATCTGAGCACGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................CGCGTTC--AGC---AGCTCATTCCATA........................................................................................................................................................................................................................................2311.0010000100
................................................ATAGATTTCTGCATGC--ATAAAC-----GT--------------T------------------------------A-.............................................................................................................................................................2611.0010000100
..................................................................................................................................................................................................................................CGACAGCCTGTTAG----------ATC-TT-------....................1911.0010000010
.................................................................................................................................T-------GTAAACCGATCGATTAAA-T---------------------------TCT................................................................................................2311.0010000010
..........................................CATTCCATAGATTTCTGCATGC--.........................................................................................................................................................................................................................2211.0010000010
droYak3
AGCGACGA------AAG---CATCGCGTTC--AGC---AGCTCATTCCATAGATTTCTGCATGC--GTAAAC-----GT--------------T------------------------------A-GT-T-------GTGAACCGATCGATTAAA-T---------------------------TCTCTGA-T----TTATGCGTGCCCTTTTAGATTACCGCGACCGACAGCCTGTTA----------AATC-TT-------CA-AGAATATCTGAGCACATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................GATTAAA-T---------------------------TCTCTGA-T----TTATGCGTGCCCTT........................................................................3015.00500000000005
...........................................................................................................................................................................................................GTGCCCTTTTAGATTACCGCGAC.........................................................2311.00110000000000
..................................................................................................................................................................................................................................CGACAGCCTGTTA----------AATC-TT-------CA-A................2211.00101000000000
.................................................................................................................................T-------GTGAACCGATCGATTAAA-T---------------------------TCT................................................................................................2311.00100000010000
........................................................................................................................................................................................................................TTACCGCGACCGACAGCCTGTTA----------AATC-T............................2811.00101000000000
.....................................................TTTCTGCATGC--GTAAAC-----GT--------------T------------------------------A-GT-..........................................................................................................................................................2311.00100000010000
.......A------AAG---CATCGCGTTC--AGC---AGC..................................................................................................................................................................................................................................................2011.00100000010000
droEug1
AGCGACGA------CAT---CATCGCGTTC--AGC---TGCTCATTCCACAGACTTCTGCATGC--ATAAAT-----GT--------------T-----------CATAGTTTTCAAAGTAGATA-GTTT-------GTAAACAGATCGATTAAA-A---------------------------TCTTTGA-C----TTATGCGTACCCTTTTAGGTTGCCGCGACCGACGGCCTGTTAATC-AGTGGAAATC-TT-------CA-AGAAAATCTCAGCCTATSizeHit CountTotal NormTotal
No Reads
droBia1
AGCGACGA------CAT---CATCGCGTTC--AGC---TGCTCATTCCACAGATTTCTGCATGC--CTAATC-----GT--------------T------------ACAGTT-TCAAAGTAGTTA-GT-C-------GTTAATCGATCGATTAAA-G---------------------------CCTCTGA-T----TTATGCGTGCCCTTTTAGGTTGCCGCGACCGACGGCCTGTTAGCC-CGGGAAAATC-TG-------GA-ACTAAATCTGAGGCCATSizeHit CountTotal NormTotal
No Reads
droTak1
AGCGACGA------CAT---CATTGCGTTC--AGC---TGCTCATTCCACAGATTTCTGCATGC--ATAAAC-----GT--------------T-----------AACAGTTTTCAAAGTAGTTA-CC-T-------ATAAATCGATCGACTAAA-A---------------------------TCTCTGA-T----TTATGCGTGCCCTTTTAGGTTGCCGCGTCCGACGGCCTGTTAGTC-AGTGGAAATC-TG-------CA-AGCAAATCTGAGTCTATSizeHit CountTotal NormTotal
No Reads
droEle1
AGCGAC--------------------------------TGCTCATTCCACAGATTTCCGCATGCATGCAAAC-----TC--------------T-----------TACAGTTCTTAAAGTAGTTA-GT-G-------GTAAAGCGATCGATAAAAAC---------------------------CCTCTGA-T----TTATGCGAACCCTTTTAGGTTGCCGCTGCCGACGGCCTGTTAGTC-AGCGGAAATC-TT-------CG-AGAAAATCTGAGCACATSizeHit CountTotal NormTotal
No Reads
droRho1
AGCGACGA------CAT---CATCGTGTTC--AAC---TGCTCATTCCACAGATTTCTGCATGC--ATTAAC-----GT--------------T-----------TACAGTTCTTAAAGTAGTTA-GT-T---GGTGGTAAACCGATCCATTAAA-C---------------------------ACCCTGA-T----TTATGCGTGCCCTTTTAGGTTGCCGCTGCCGACGGCCTGTTAGTC-AGTGGAACTC-CT-------CG-AGAAAATCTGAGCACGTSizeHit CountTotal NormTotal
No Reads
droFic1
AGCGACGA------TAT---CATCGCGTTC--AGC---TGCTCATTCCACAGATTTCTGCATGC--ATAAAC-----GT---TTTAAAAATATT------------------------------A-GT-A-------GTATACAGTTCGATTCAA------------------------------CTCTGA-T----TTATGCGTGCCCTTTTAGGTTGCCGCGGCCGACGGCCTGTTAGTC-AGTGGAAGTC-TC-------CA-AGAAAATCTGAGCCCGTSizeHit CountTotal NormTotal
No Reads
droKik1
AGCGGAGC------CATCATCATCGTGTTC--AGCTCGTGTTCATTCCACAAAACTATGCATGC--ATCCGC-----GT--------------T-----------AGCAGTTTT-GATGTAGTTA-GTTTGCTA---GCGTTCCCATTAATC---GC---------------------------TCTCTGA-TATACATGTGTGTGCCCTTTTAGGTTGCCGCCGCCGACGGCCTGTTAGTC-AGTGGACATC-TT-------CA-AGAAAATCTAAACAAATSizeHit CountTotal NormTotal
No Reads
droAna3
AGAGGGGT------CATC--CAACGTGTTC--AAC---TGCTCATTCCTAAGATTTCTGCATGC--AA-------------------------------------------------TGTAGTTAAGT-T---A---GTACTCAATTTAATT---GC---------------------------TCTCTGA-C----CTGTATATGCCCTTTTAGGTTGCCGCCGCCGACGGCTTGTTAGTCCAGAGGGAATCCTT-------CA-CAAAGATCTAAGACCG-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................................................................................................................................................................................GTTAGTCCAGAGGGAATCCTT-------....................2112.002000002
.............................C--AAC---TGCTCATTCCTAAGATT....................................................................................................................................................................................................................................2111.001100000
................................................................................................................................................................................................................................GCCGACGGCTTGTTAGTCCAGT.....................................2211.001000001
......................................................................................................................................................................................................................GGTTGCCGCCGCCGACGGCTT................................................2111.001100000
............................................................................................................................................................................................................................................TTAGTCCAGAGGGAATCCTT-------C...................2111.001100000
...............................................................................................................................................................................................................CCTTTTAGGTTGCCGCCGCCG.......................................................2111.001000100
..................................C---TGCTCATTCCTAAGATTTCT.................................................................................................................................................................................................................................2111.001100000
......GT------CATC--CAACGTGTTC--AAC---TG...................................................................................................................................................................................................................................................2111.001100000
.......................CGTGTTC--AAC---TGCTCATTCCT..........................................................................................................................................................................................................................................2111.001100000
....................CAACGTGTTC--AAC---TGCTCATT.............................................................................................................................................................................................................................................2111.001100000
.........................................TCATTCCTAAGATTTCTGCAT.............................................................................................................................................................................................................................2111.001000001
......................................................................................................................................................TT---GC---------------------------TCTCTGA-C----CTGTATATG.............................................................................2111.001100000
................................................................................................................................................ATTTAATT---GC---------------------------TCTCTGA-C----CTG...................................................................................2111.001100000
....................................................................................................................................................................................................................................ACGGCTTGTTAGTCCAGAGG...................................2011.001100000
...................................................................................................................................................TAATT---GC---------------------------TCTCTGA-C----CTGTAT................................................................................2111.001100000
............................................................................................................................................................C---------------------------TCTCTGA-C----CTGTATATGCCC..........................................................................2111.001100000
droBip1
AGCGGGGT------CATC--CAACGTGTTC--AAC---TGCTCATTCCTAAGATTTCTGCATGC--AA-------------------------------------------------TGTAGTTAAGT-T---A---GCAGCCAATTTAATT---GC---------------------------TCTCTGA-A----CTGTATATGCCCTTTTAGGTTGCCGCCGCCGACGGCATGTTAGTCCAGAGGAAATCCTT-------CA-CGAAGATCTA----CGASizeHit CountTotal NormTotal
No Reads
dp5
AGCGACGT------CAT---CATCATGTTG--AGC---GACTCATTCCCAAAATATCTGCATGC--T-AAACTTT------A-----------------TTCGACTGAAGTTTTAAGAGTAGTTA-GC-T-------ATTAATCGGTCGATCGAA-C--------------------CACCTTCTCTTTGA-C----ACGTGTGGGCTCTTCTAGGTTACCGCCCCCGACGGCCTGTTAGTC-AGCGGAT-C-ACGCGCGCAGCC-AGAAGATCTAGGCATA-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................................................................................................................................................................................TTTGA-C----ACGTGTGGGCTCTTCTAGG...................................................................2521.0020100000010
....................CATCATGTTG--AGC---GACTCATTCCCAAAAT.....................................................................................................................................................................................................................................2911.0010010000000
.............................................................................................................................................ATCGGTCGATCGAA-C--------------------CACCTT....................................................................................................2121.0020200000000
............................TG--AGC---GACTCATTCCCAAAAT.....................................................................................................................................................................................................................................2111.0010000001000
................................................................................................................TTAAGAGTAGTTA-GC-T-------ATT...............................................................................................................................................1921.0020100100000
......................................................................................................................................................................................TCTCTTTGA-C----ACGTGTGGGC............................................................................2021.0020100001000
......................TCATGTTG--AGC---GACTCATTCC...........................................................................................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................TAGGTTACCGCCCCCGACGGCCTG...............................................2421.0020200000000
..........................GTTG--AGC---GACTCATTCCCAAA.......................................................................................................................................................................................................................................2111.0010000001000
...................................................AATATCTGCATGC--T-AAACTTT------C-----------------........................................................................................................................................................................................2221.0020000000020
..........................................CATTCCCAAAATATCTGCATGC--T-AAAC...................................................................................................................................................................................................................2720.5010000000010
.......................................................................................................................................................................................................GTGTGGGCTCTTCTAGGTTAC...............................................................2120.5010000001000
.............................................................TGC--T-AAACTTT------A-----------------TTCGACT.................................................................................................................................................................................1920.5010100000000
...............................................................C--T-AAACTTT------A-----------------TTCGACTGAAG.............................................................................................................................................................................2120.5010100000000
.......................................................................................................................................................................................CTCTTTGA-C----ACGTGTGGGCT...........................................................................2020.5011000000000
....................................................................................................................................................................................................................................ACGGCCTGTTAGTC-AGCGGA..................................2020.5010000000010
.......................................................................................................................................................................................................................................................GAT-C-ACGCGCGCAGCC-AGAAG............2120.5010100000000
...................................................................................................................................................................................CCTTCTCTTTGA-C----ACGTGTGG..............................................................................2120.5010100000000
..............................................................................................................................................................................................................................................AGTC-AGCGGAT-C-ACGCGCGCA.....................2120.5010100000000
..............................................................................................................TTTTAAGAGTAGTTA-GC-T-------ATT...............................................................................................................................................2120.5010000001000
..........................................................................................................................................TTAATCGGTCGATCGAA-C--------------------CAC.......................................................................................................2120.5010100000000
......................................................................................................................................................................................TCTCTTTGA-C----ACGTGTGGT.............................................................................1920.5010100000000
..........................................................................T------A-----------------TTCGACTGAAGTTTTAAGA.....................................................................................................................................................................2120.5010100000000
......................................................................................................................................................................................................................................GGCCTGTTAGTC-AGCGGA..................................1820.5010100000000
...............................................................................................................................C-T-------ATTAATCGGTCGATCGAA-C--------------------..........................................................................................................2120.5010100000000
.............................................................................................................................................................................................GA-C----ACGTGTGGGCTCTTCTAG....................................................................2120.5010000001000
..........................................................................T------A-----------------TTCGACTGAAGTTTTAAGAGTAGT................................................................................................................................................................2620.5010000000010
..........................................................................................................................................................................................TTTGA-C----ACGTGTGGGCTCTTC.......................................................................2120.5010100000000
...................................................................................................................................................................................CCTTCTCTTTGA-C----ACGTGTGGGCTCT.........................................................................2620.5010010000000
..........................................................................................................GAAGTTTTAAGAGTAGTTA-GC-..........................................................................................................................................................2120.5010100000000
................................AGC---GACTCATTCCCAAAATATCTGCA..............................................................................................................................................................................................................................2620.5010100000000
............................................................................................................................................AATCGGTCGATCGAA-C--------------------CACCTTCTCT................................................................................................2620.5010100000000
.....................................................................................................................................................................................................................................CGGCCTGTTAGTC-AGCGGAT-C-ACG...........................2420.5010000000010
..............................................................................................................................................TCGGTCGATCGAA-C--------------------CACCTTCTCTT...............................................................................................2520.5010100000000
..................................................................................................................................................................................................................TCTAGGTTACCGCCCCCGACGG...................................................2220.5010100000000
droPer2
AGCGACGT------CAT---CATCATGTTG--AGC---GACTCATTCCCAAAATATCTGCATGC--T-AAACTTT------A-----------------TTCGACTGAAGTTTTAAGAGTAGTTA-GC-T-------ATTAATCGGTCGATCGAA-C--------------------CACCTTCTCTTTGA-C----ACGTGTGTGCTCTTCTAGGTTACCGCCCCCGACGGCCTGTTAGTC-AGCGGAT-C-GCGCGCGCAGCC-AGAAGATCTAGGCATA-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................TCATGTTG--AGC---GACTCATT.............................................................................................................................................................................................................................................1911.001100000
............................................................................................................................................AATCGGTCGATCGAA-C--------------------CACC......................................................................................................2011.001100000
.........................................................................................................................................ATTAATCGGTCGATCGAA-C--------------------..........................................................................................................1911.001100000
...................................................................................................................................................CGATCGAA-C--------------------CACCTTCTCTT...............................................................................................2011.001001000
.........................................................................TT------A-----------------TTCGACTGAAGTTTTAAGAGT...................................................................................................................................................................2411.001000001
.........................................................................................................................................................................................................................TACCGCCCCCGACGGCCT................................................1811.001010000
droWil2
GGTTCCTATAGT--TTC---CATCTTCATA--ACC---AGCTAAATCAT----AATCTGCATGC--AAAAAT-----T-----------------------------------------------------------GTGCTCAACTTGAAT---TC--------------------TTTTCTGCCTCTAACT----TTTTGTGAA-TTTTCCAGACTACCACGGCCCACAGCTTGTTAGTA-AATAGAA-C-ATCCAAGACTCG-AAAAGAAACAGATTTAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................ATCTGCATGC--AAAAAT-----T-----------------------------------------------------------GT................................................................................................................................................1911.00100010
.......................CTTCATA--ACC---AGCTAAATC............................................................................................................................................................................................................................................1911.00100010
.................................................................................................................................................................................................................................................A-AATAGAA-C-ATCCAAGACT....................1911.00100010
....................................................................................................................................................................................................................................................ATAGAA-C-ATCCAAGACTCG-AAAAGA...........2511.00100100
..........................................................................................................................................................................................TCTAACT----TTTTGTGAA-TTTTCCAGACT.................................................................2711.00101000
.............................................................................T-----------------------------------------------------------GTGCTCAACTTGAAT---TC--------------------TTT.......................................................................................................2111.00101000
.......................................................................................................................................................................................................................................................GAA-C-ATCCAAGACTCG-AAAAGAAACA.......2611.00100100
droVir3
AAAAACCA------CAA---GAGCGCCTTC--ATT---ACATAACTCT---AAGCTGTGCATGC--AA--TT-----CTCACTTCAAAATATTTAGTGAT----------------------------------------------CCGATTAAA-ATTTATAATTAACTTTTGTATT------ACCCTCA-T----TTA-ACTTGCAATTCTAGATTGCCACCGCCAACGGCCTGTTAGTG-G-CAGGA-C-AAT------------------CGGGAAGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
................................................................................................................................................................................................................................GCCAACGGCCTGTTAGTG-G-C.....................................2011.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TAGATTGCCACCGCCAACGGCCTGT..............................................2511.001000000000000000000000000001000000000000000000000000000000000000
...................................................................................TCAAAATATTTAGTGAT----------------------------------------------CCGATTAA.................................................................................................................................2511.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................AACGGCCTGTTAGTG-G-CAGGG-................................2111.001000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................GGCCTGTTAGTG-G-CAGGA-C-AAT------------------CGG......2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................AACGGCCTGTTAGTG-G-CAGGA-................................2111.001000000001000000000000000000000000000000000000000000000000000000
........................................................................................ATATTTAGTGAT----------------------------------------------CCGATTAA.................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TGCAGCAAAAGCAACCT---GAACGCATTCATAAC---TGAACTTTCA-----TCTGTGCATGC--AA-TTCTCA------ATTCAATATAATTAGTGGC-----------------------------T-------CTATAGAAATGT-ATAAA-T---------------------------AACCTTA-T----TTG-AATTGCAATTCTAGACTGCCAATGCCAACTGCTTGTTAGGA-G-CAGG-ATA-TTCGGGAAGCT----CCACTTGTTAACTTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................TAGACTGCCAATGCCAACTGC..................................................2111.001100000
........................................................................................................................................................................................................................................................G-ATA-TTCGGGAAGCT----CCACTT........2111.001000001
.............................................................................................................................................................................................................................AATGCCAACTGCTTGTTAGGA-G-C.....................................2311.001100000
...........................................................................................................................................................................................................................................GTTAGGA-G-CAGG-ATA-TTCGGGAAGC...................2511.001000001

Generated: 05/18/2015 at 10:28 AM