ID:

dsi_9681

 Coordinate:

2l:3222599-3222869 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2l_3222870_3223066_-]; CDS [2l_3222870_3223066_-]; exon [2l_3222302_3222598_-]; CDS [2l_3222302_3222598_-]; intron [2l_3222599_3222869_-]

Repeatable elements

NameClassFamilyStrand
(TTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGGCGGCCGAGGAGAGGTAAGCATTGCGACTCTAGCCGTAGCAACCAATTAACTACAATGCAACAACCACAACAACAAGAACAACAAATACAGCAACAAAGCAAAGCAATTTCTTTCTAATATTTTGTAATGAACATATAAAATCAGAGTTCGAATTCGATAACTGCCAATGCCAATTGCCATTGCTTCTTCTAACCACACCAAAACGCACGCATGCTCACAATAAACATGAAACCACTCGTTACGAACCAAAAGCAACATCCAGCTACAATCAACATACATCTCAGGCATGAATCAGCAATCCGCCACCTCCACGTCGACCACCTCCATCACGACA
**************************************************((.(((((.(((......((.((((...........))))...)).....................................((((((.((((((..........((((((((.......))))))))(((...(((....)))...)))........))))))..))))))......................)))))))).)).......((((......))))...........(((........)))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
...GACGTGCATTCCACCTGCCAAGGGA....................................................................................................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0
...........TTCCACCTGCCAAGGGAAAGGGTCGGC............................................................................................................................................................................................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0 0 0
................................................................................................................................................................................ATCAGAGTTCGATTTCG.................................................................................................................................................................................. 17 1 2 0.50 1 0 0 1 0 0 0 0
...................................GGCGGCCGAGGAGAG................................................................................................................................................................................................................................................................................................................................. 15 0 2 0.50 1 0 0 0 1 0 0 0
...........................................................................................................AACAAGTACAACAAATAGAGTAA................................................................................................................................................................................................................................................. 23 3 4 0.50 2 0 0 0 0 2 0 0
............................................................................................TGCAACAATCAGAACAACAAGAC................................................................................................................................................................................................................................................................ 23 3 4 0.25 1 0 0 0 0 0 1 0
.................CTGCCAAGGGAACGGG.................................................................................................................................................................................................................................................................................................................................................. 16 1 13 0.15 2 0 0 1 0 0 1 0
...................GCCAAGGGAACGGGCTGGCG............................................................................................................................................................................................................................................................................................................................................ 20 3 12 0.08 1 0 0 0 0 0 1 0
.................CAGCCAAGGGAAAGGG.................................................................................................................................................................................................................................................................................................................................................. 16 1 13 0.08 1 0 0 0 0 0 0 1
..................................................................................................................................................................................................................................................................................................................................................GCCACCTCGATGTCGACC............... 18 2 13 0.08 1 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................................................CCGCCACGTCGACCA.............. 15 1 18 0.06 1 0 1 0 0 0 0 0
.............................................................................................................................................................................AAAATCAGAGTTCTAAA..................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0
..................................................................................................................................................................................CAGAGTTCGAAGGCGATCA.............................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 1 0 0 0

Anti-sense strand reads

GCTCTGCACGTAAGGTGGACGGTTCCCTTTCCCAGCCGCCGGCTCCTCTCCATTCGTAACGCTGAGATCGGCATCGTTGGTTAATTGATGTTACGTTGTTGGTGTTGTTGTTCTTGTTGTTTATGTCGTTGTTTCGTTTCGTTAAAGAAAGATTATAAAACATTACTTGTATATTTTAGTCTCAAGCTTAAGCTATTGACGGTTACGGTTAACGGTAACGAAGAAGATTGGTGTGGTTTTGCGTGCGTACGAGTGTTATTTGTACTTTGGTGAGCAATGCTTGGTTTTCGTTGTAGGTCGATGTTAGTTGTATGTAGAGTCCGTACTTAGTCGTTAGGCGGTGGAGGTGCAGCTGGTGGAGGTAGTGCTGT
**************************************************((.(((((.(((......((.((((...........))))...)).....................................((((((.((((((..........((((((((.......))))))))(((...(((....)))...)))........))))))..))))))......................)))))))).)).......((((......))))...........(((........)))....................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
.............................................................................................................................................................................................................................................................................................................................................GTTTGCGGTGGAGGTGCAGCTGGTG............. 25 3 1 1.00 1 1 0 0 0 0 0 0 0
........................................................TAACGCTGCGATCGGGAT......................................................................................................................................................................................................................................................................................................... 18 2 3 0.67 2 0 2 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................GTATGTCGATTTTAGTTGTAT.......................................................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0
...................................................................................................TGGTGATGTTTTTCTTGTTTTTT......................................................................................................................................................................................................................................................... 23 3 10 0.20 2 0 2 0 0 0 0 0 0
...............................CCAGCGGCCGGCTCC..................................................................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................................................................................TATGTCGATGTTAGT............................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1 0
..........................................................................................................................................................................................................................................................................................................................TGGAGTCAGTACTTAGTTG...................................... 19 3 10 0.10 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................................................................................CAAGGCTTGGTTTTC.................................................................................. 15 1 11 0.09 1 0 0 0 1 0 0 0 0
..TCGGCACGTACGGTGGACC.............................................................................................................................................................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 0 1 0 0 0 0
..................................GCGGCCGGCTCCGCTCC................................................................................................................................................................................................................................................................................................................................ 17 2 17 0.06 1 0 1 0 0 0 0 0 0
...................................................................TCGGCGTCTTTGGTTAAT.............................................................................................................................................................................................................................................................................................. 18 2 19 0.05 1 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................................GGTGCGCAATGCGTGG....................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................................................GCCGCTGGATGTAGTGCT.. 18 3 20 0.05 1 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................TCGATGTTCGTTGGATATA....................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:3222549-3222919 - dsi_9681 CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGGCGGCCGAGGAGAGGTAAGCATTGCGACTCTAGCCGTAGCAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTTTCTAATA-----------TTTTGTAATGAACAT--ATA---------------------------AAATCAGAGTTCG----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A------------------A----TAAACATG-AA-----------------------A----CCACTCGTTACG--AAC---------------CAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTC------------CACGTCGA------CCACC---TCCATCACGACA
droSec2 scaffold_5:1509805-1510175 - CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGGCGGCCGAGGAGAGGTAAGCATTGCGACTCTAGCCGCAGCAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTTTCTAATA-----------TTTTGTTATGAACAT--ATG---------------------------AAATCAGAGTTCG----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A------------------A----TAAACATG-AA-----------------------A----CCACTCGTTACG--AAC---------------CAAAAGCAACA--TCCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTC------------CACGTCGA------CCACC---TCCATCACGACA
dm3 chr2L:3362669-3363048 - CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGACGGCCGAGGAGAGGTAAGCATTGCGACTCTAGACGCAGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACAACAA------------ATACA---GCAAATACA--------GCAACAA--AGCAAAG--------------CAATTTCTTTCTAATA-----------TTTTGTAATGAACAT--ATC---------------------------AAATCAGAGTTCG----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAATCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A------------------A----TAAACATG-AA-----------------------A----CCACTCGTTACG--AAC---------------CAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTC------------CACGTCGA------CCACC---TCCATCACGACA
droEre2 scaffold_4929:3392741-3393100 - CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGACGGCGGCCGCGGAGAGGTAAGCATTGCGACTCTAGCCACAGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTTTCTAA-------------TATTGTAATGAACAT--ATC-----------AA-------------GAAATCAGAGTTCG----AATTCGT-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCCCAC--------A------------------A----AAAACATC-AA-----------------------A----CAACTCGTTAAG--AAA---------------CAAAAGCCACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACATC------------CACGTCGA---------------------CCACA
droYak3 2L:3347401-3347799 - dya_210 CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGACGGAGGCCGAGGAGAGGTAAGCATTGCGACTCTAGTCCCAGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACAACAAAAACAAAAACAAAAACA---GCAAATACA--------GCAGCAA--AGCAAAG--------------CAATTTCTTTCTAA-------------TATTGTAATGAACAT--ATA-----------AA----------AAAAAAATCAGAGTTAG----AATTCGAAAA--TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A------------------A----TAAACATC-AA-----------------------A----CAACTCGTTAAG--AAT---------------CAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACATC------------CACGTCGA------CCACC---TCCATCACGACA
droEug1 scf7180000409554:2733804-2734176 + CGAAACGTGCATTCCGCCTGCCAAGGGAAAGGGACGCAGGCCGAGGAGAGGTAAGCATTGCGAACTAAATCACTATAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAATC------TCTAATATTGTAATGAAAAT--ACT---------------------------CGATCAGAACTCA----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------C------------------A---CTA--------A-----------------------A----CAACATGTTAAG--AAC---------------CAAAAGCAACA--ACCAGCTACA---ACCAACATAAATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTC------------CACATCGA------CCACCACGACCAACACCACA
droBia1 scf7180000301468:1167591-1167977 + CGAGACCTGCATTCCACCTGCGAAGGGAAAGGGTCGCAGGCCCCGGAGAGGTAAGCATCGCGACGTGAGTCACTCTGACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACAGAAAATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAA-------------TTTTGTAATGAAACT--ACT-----------A-------------CCCAATCAGAACAAT----AATTCGA-----TA----ACCGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAT-C--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A------------------A---CTAAACATCCAA-----------------------A----CAACATGTTAAG--AAC---------------C------AACA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTCGACCACCTCAACCACATCGA------CCAACACCACTGCCACCACA
droTak1 scf7180000415914:756978-757323 + CGAGACCTGCATTCCGCCGGCCAAGGGAAAGGGACGCAGGCCGAGGAGAGGTAAGCATCGCGACTCAAGCCACTGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---GATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAATC------------TCTGTAATGAAAGT--ACT---------------------------CAATCCGAAATCAATCAAATTCGA-----T-----------------------------------------------------------AACCACAC----A----AAA-------------------------------------------------------------------------------------------------------------------------------------CCACGCACGCATGTCCAC--------A------------------ACATCTAAACATC-CA-----------------------A----GAACATGTTAAG--AAC---------------CCAAAGCCACAAAAACAGCTACAGCAACCAACATAAATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTCGAC---------CACATCGA------C------------CACTA-A
droEle1 scf7180000491046:2068182-2068575 - CGAGACCTGCATTCCACCGGCCAAGGGAAAGGGACGCAGACCGAGGAGAGGTAAGCATCGCAACCCAGGCCACTGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAA-------------TCTTGTAATGGAATT--AAT-----------AC-------------TAAATCAGAGTTCGA---AATTCGA-----TA----ACTGTCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTCCTAACCACAATC--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A------------------A---CTAAACATC-AA-----------------------A----CAACATGTAAAA--AAA-----CCAA-AAAACGAAAAGCATCA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGTCACCGCCACCGCCACCCCCATATCGA------CAT------CCACCGCAATG
droRho1 scf7180000777227:212287-212651 - CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGTCGCAGACCGAGGAGAGGTAAGCATCGCAACTTAGGCCACTGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAA-------------TCTTGTAATGGAATT--ACT---------------------------CAATCAGAATTCA----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCATAC----AAA--AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A------------------A---CTAAACATC-A------------------------A----CAACATGTTAAA--AAC---------------CAAAAGCCACA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAACAATC------------------CGCCACCTC------------AACATCGA------C---------CACCACAACA
droFic1 scf7180000453924:1343655-1344045 - CGAGACCTGCATTCCGCCGGCGAAGGGAAAGGGCCGCCGGCCGAGGAGAGGTAAGCATCGCGATCTGTGCCACTGTAACCGAT----------------TAACTACAACGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAGCAA--AGCAAAG--------------CAATTTCTCTCTAATA------CTGAATACTGTAATGAAATT--ACC---------------------------CGATCAGAATCCAA-ATAATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------C------------------A---CTAAACATG-AA-----------------------A----CCACCTGTTAAG--AAC---------------CCAAAGCCACA--ACCAGCTACA---AAGAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCATCGCCATCGCCACCTCGACCTCGA------CCTCG---ACCACCGCCACT
droKik1 scf7180000302679:1477381-1477770 + CGAGACTTGCATTCCGCCGGCCAAGGGCAAGGGACGCAGGCCGAGGCGAGGTAAGCAGTTTGATTTA--------------AT------------TAA-CAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACAACAAATACA--------GCAACAA-TAGCAAAG--------------CAATTTTCCTCTCAACTTTAAACTTTAAACTGTAATGAAATT--AA---------------------TTCAATTCAATCAGAATCCG----AATTCGA-----TA--ACACTGCCAAAAGCCA--AT-------------------TGCCAATTGCTTCTTCTAACCTAACAC--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACCAC--------C------------------ACAACTAAACATC-AACATC---A---------------A----CATCATGTTAAC--AACAACAACCACAACAACCAAAAGCCACA--ACCAGCTACAACAACCAACATACATCA---CAGGCATGAAT---CAGCAATC------------------GG---------------------------------------------TAACAACA
droAna3 scaffold_12916:13365118-13365546 + TGAGACGTGCATTCCGCCCGCCAAGGGCAAGGGACGTCGTCCGAGGAGAGGTAAGCACTTAGTTCTAGGGAACATTA----AC----------------TGACAAGAATGCAACAACCAC---AACAACAAGAACAACAA------------TCACA---ACAAAA----TACTACAGCAACAA--TGCAAAG--------------CAATTATTCCGTAA-------------CTTTATAATGAAAATTTTCCAAATATTTAATATTA--------AATTCGATCTG----------AATGCGA-----T---------CCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCGCACA---C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACAAC--------A------------------T---CTGAACATC-AACAAC---AATCGATA--C--CATT----GAATATGTTACCAAAAA---------------CAAAAGCCACA--ACCAGCTACA---ACCAACATACATCA---CAGGCATGAATATCCCTCCATCTGGGACATCAACTGCATCCGACACAGC------------AACTGCGA------CAACC---ACCACCACTACG
droBip1 scf7180000396580:135144-135578 - CGAAACGTGCATTCCGCCCGCCAAGGGCAAGGGACGGCGTCCGCGGAGGGGTAAGCATTTAGTTTTAGGCCACAACAACCAAC----------------TGACAACAGTGCAACAACCAC---AACAACAAGAACAACAA------------TCACA---ACCAATAC-----TACAGCAACAA--TGCAAAG--------------CAATTCTTCCGTAA-------------TTTTGTAATGAAATT--TCC--ATATTCGATACTA--------AATTTGATCTGAATGCG----AATTCGA-----TTCAACACTGCCAAT-GCCA--ATTGCCA------------ATTGCC-ATTGCTTCTTCTAACCACAC----------AA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACCAC--------A------------------T-----CAACATC-AACAACATCAGTCGATA--C--CATT----GAATATGCTAAC--AAC---------------C--AAGCCACA--ACCTGCTACA---ACCAACATACATCA---CAGGCATGAAT---CCTCCTTCTGCGACATCAA------------CATC------------CTCATCGGCGAAAACAGCC---ACTGCCACGACC
dp5 4_group3:6205562-6206003 + dps_1585 CGAGACGTGTATACCGCCTGCCAAGGGCAAGGGACGGAGGCCGAGGCGTGGTAAGCATTTAGATGTAAGCAATAACAAACAAT----------------TAA---CAATGCAACAACCAC---AACAACAACAAGA---------------------AC------AACA--------GCAACAA--TGCAAAG--------------CATAATCTT--TAA-------------TTCTATACAA----------AAATATGGAATAGTATA---GTCTATTCCATATG----------TATTCTATATATTT--ACACTGCCAAT-GCCA--ATTGCCATTTGCCATTGCCATTGCC-ATTGCTTCTTCTAACCACACACACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------CCACTCACGCATGCATAC-CAATCATTCCAACAACTGCTA------CAACAAAACCTC-CA---------ACGAAAACCCA----ATTCCAATATG-------------------------CAAAAGCTACA--ACAAGCTACA---AACAACATACACCACAACAGGCATAAAT---CAACAATC------------------AACAACAAC------------GAAAACAG------CAACAGCAGCAGGGACGACA
droPer2 scaffold_1:7698765-7699206 + CGAGACGTGTATACCGCCTGCCAAGGGCAAGGGACGGAGGCCGAGGCGTGGTAAGCATTTAGATGTAAGCAATAACAAACAAT----------------TAA---CAATGCAACAACCAC---AACAACAAGAACA---------------------AGA---ACAACA--------GCAACAA--TGCAAAG--------------CATAATCTT--GAA-------------TTCTATACAA----------AAATATGGAATAGTATA---GTCTATTCCATATG----------TATTCTATATATTT--ACACTGCCAAT-GCCA--ATTGCCATTTGCCATTGCCATTGCC-ATTGCTTCTTCTAACCACACACACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------CCACTCACGCATGCATAC-CAATCATTCCAACAACTGCTA------CAACAAAACCTC-CA---------ACGAAAACCCA----ATTCCAATATG-------------------------CAAAAGCTACA--ACAAGCTACA---AACAACATACACCACAACAGGCATAAAT---CAACAATC------------------AACAACAAC------------GAAAACAG------CAACA---GCAGGGACGACA
droWil2 scf2_1100000004945:820613-821075 - dwi_3569 TGAGACTTGTATACCACCGGCCAAGGGTAAAGGACGCCGACCCAGACGTGGTAAGAATTTTTTGTTTATTTCTA---ACACAAAGTCTAACAAGCAAACAAAACAAAATGCAACAACAACCACAACAACAACATCA---ACAAGAAAACCAACAACA---ACAAGTACA--------ATCACA---AGAACAA--------------CAACT----------------------------------------------------------------------------------------------------------------T-GCCAAAAT-------------------TGCCAATTGCTTCTTCTAATCAAAC----C----AAATTAAATACATATGTACATACATACATCTACACGCAAAATCATATTCTAAATCTGAACCATAAACAATTGAAAATTACTTAGAAAAACAAACTATATAAACTACCTACTACCCAATCCACATATATACATCAATACATACACACATGCACACACAAACACACACACACCCGCA------ACAAT---------------------CTA--------------------------A--AAC------------CAACAAAAGCTACA--ACAAGCTACC---AACAACATATA------CAGGCTTAAAT---CAACAA----------------------------------------------------------------CATCAACAACA
droVir3 scaffold_12963:8170724-8171076 - dvi_10883 CGAGACCTGCATACCGCCGGCCAAGGGCAAGGGCAGGCGTCCCAGACGTGGTAAGCATTTAGACATTAGCTTTA-----------------------------------GCAACAGCAAC---AACAACAACAACA---------------------AC------AATAG-----CAACAACAAACAGCAATG--------------CAAT-----------------------------AATGTACAT--GAT-----------AAAC--AAATGCTATTTAATACGAATACA----AATAC-------------ACTTGCAAT-GCCA--AA------------ATGCAATTGCA-ATTGCTTTTTCTAACCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ATGCACGCACAAA-------CCACAAGAACAACAGCAACTAGAA----CA---------------------------------ATT------C-----G--CAT------------GCCCAGCTG--CAA--ACTAGCTACA---ACAACCACAC---A---CAGGCCCCAAA---CAGCGACA------------------ATTGATTGCGGCAG------------CAA------CACCA---ACAACAACGACA
droMoj3 scaffold_6473:12314523-12314625 + CAAGTA--------------------------GCAACAGGCAGAGCAGCAGCAGCAGCAGCAGCCGCAGCCGCCGC--------------------------------CGCAGCAGCAGC---GACAACAACTACA---------------------ACA---ACAACT--------GCAACAA--AATCAAC--------------CAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:7583191-7583532 - CGAAACTTGTATACCGCCCGCCAAGGGCAAGGGACGACGGCCAAGACGTGGTAAGCATTCATTCAACAGACACTAACA---------------------------TTAAGCAGTAACAAC---AGCAACGAAAA-----------------------------------------------------GCAATGCAAACAAAACATAAC--------------------------------AATGCA-----------------------------------AAATCAATATGCG----AATACAA-----AT--ACATTGTCAAT-GCCAA-AATGCCAA-----AATGCCATTGCT-ATTGCTTCTTCTAATCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ATGCACGCACAACTAG--------A------------------G----CAAGCTAC-AA-----------------------A----CTAGCTGTTAAT--TAT---------------AAAAAGA-AC------A---ACAAC-ATCAACA-----CG---CAGGCTTCAAA---C----ATCAGCAACAATT--------GGTTACTTC------------AGCAACAA---TAGTAACA---GCAACAACAACA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGGCGGCCGAGGAGAGGTAAGCATTGCGACTCTAGCCGTAGCAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTTTCTAATA-----------TTTTGTAATGAACAT--ATA---------------------------AAATCAGAGTTCG----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A------------------A----TAAACATG-AA-----------------------A----CCACTCGTTACG--AAC---------------CAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTC------------CACGTCGA------CCACC---TCCATCACGACASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...GACGTGCATTCCACCTGCCAAGGGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
...........TTCCACCTGCCAAGGGAAAGGGTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000000000
...................................GGCGGCCGAGGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1520.50100000000001000000
droSec2
CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGGCGGCCGAGGAGAGGTAAGCATTGCGACTCTAGCCGCAGCAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTTTCTAATA-----------TTTTGTTATGAACAT--ATG---------------------------AAATCAGAGTTCG----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A------------------A----TAAACATG-AA-----------------------A----CCACTCGTTACG--AAC---------------CAAAAGCAACA--TCCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTC------------CACGTCGA------CCACC---TCCATCACGACASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................AGGGAAAGGGTCGGCGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
............................AAGGGTCGGCGGCCGAGGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.....CGTGCATTCCACCTGCCAAGGGAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
..........ATTCCACCTGCCAAGGGAAAGGGTCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
dm3
CGAGACGTGCATTCCACCTGCCAAGGGAAAGGGTCGACGGCCGAGGAGAGGTAAGCATTGCGACTCTAGACGCAGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACAACAA------------ATACA---GCAAATACA--------GCAACAA--AGCAAAG--------------CAATTTCTTTCTAATA-----------TTTTGTAATGAACAT--ATC---------------------------AAATCAGAGTTCG----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAATCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A------------------A----TAAACATG-AA-----------------------A----CCACTCGTTACG--AAC---------------CAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTC------------CACGTCGA------CCACC---TCCATCACGACASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................GCATTGCGACTCTAGACGCAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2215.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TGCATTCCACCTGCCAAGGGAAAGGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2614.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GTCGACGGCCGAGGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000100000000000000000
................................................................................................................................CAAGAACAACAA------------ATACA---GCAAATACA--------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GAGACGTGCATTCCACCTGCCAAGGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG-AA-----------------------A----CCACTCGTTACG--AAC---------------CA........................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ATTCCACCTGCCAAGGGAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CACCTGCCAAGGGAAAGGGTCGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................GCCAAGGGAAAGGGTCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--TCCAGCTACA---ATCAACA.........................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
............TCCACCTGCCAAGGGAAAGGGTCGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................AAGGGTCGACGGCCGAGGAGAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...GACGTGCATTCCACCTGCCAAGGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...................................................TAAGCATTGCGACTCTAGACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC------------CACGTCGA------CCACC---TCC.........1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTC------------CACGTCGA------CCACC---TCCA........2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT---CAGCAATC------------------CGCCACCTC------------CACGTC............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............CACCTGCCAAGGGAAAGGGTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................ACAA------------ATACA---GCAAATACA--------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............TCCACCTGCCAAGGGAAAGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
............TCCACCTGCCAAGGGAAAGGGTCGACGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATCT---CAGGCATGAAT---CAGCA............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................GGGAAAGGGTCGACGGCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................ACCAC---AACAACAAGAACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGACGGCGGCCGCGGAGAGGTAAGCATTGCGACTCTAGCCACAGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTTTCTAA-------------TATTGTAATGAACAT--ATC-----------AA-------------GAAATCAGAGTTCG----AATTCGT-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCCCAC--------A------------------A----AAAACATC-AA-----------------------A----CAACTCGTTAAG--AAA---------------CAAAAGCCACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACATC------------CACGTCGA---------------------CCACASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........ATTCCACCTGCCAAGGGAAAGGGACGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000100
CGAGACCTGCATTCCACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
droYak3
CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGACGGAGGCCGAGGAGAGGTAAGCATTGCGACTCTAGTCCCAGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACAACAAAAACAAAAACAAAAACA---GCAAATACA--------GCAGCAA--AGCAAAG--------------CAATTTCTTTCTAA-------------TATTGTAATGAACAT--ATA-----------AA----------AAAAAAATCAGAGTTAG----AATTCGAAAA--TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGCTCAC--------A------------------A----TAAACATC-AA-----------------------A----CAACTCGTTAAG--AAT---------------CAAAAGCAACA--TCCAGCTACA---ATCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACATC------------CACGTCGA------CCACC---TCCATCACGACASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...GACCTGCATTCCACCTGCCAAGGGAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000000001
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAT---CAGCAATC------------------CGCCACATC------------CA................................2311.00101000000000
..........................GAAAGGGACGGAGGCCGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
CGAAACGTGCATTCCGCCTGCCAAGGGAAAGGGACGCAGGCCGAGGAGAGGTAAGCATTGCGAACTAAATCACTATAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAATC------TCTAATATTGTAATGAAAAT--ACT---------------------------CGATCAGAACTCA----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC----A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------C------------------A---CTA--------A-----------------------A----CAACATGTTAAG--AAC---------------CAAAAGCAACA--ACCAGCTACA---ACCAACATAAATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTC------------CACATCGA------CCACCACGACCAACACCACASizeHit CountTotal NormTotal
No Reads
droBia1
CGAGACCTGCATTCCACCTGCGAAGGGAAAGGGTCGCAGGCCCCGGAGAGGTAAGCATCGCGACGTGAGTCACTCTGACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACAGAAAATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAA-------------TTTTGTAATGAAACT--ACT-----------A-------------CCCAATCAGAACAAT----AATTCGA-----TA----ACCGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAT-C--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A------------------A---CTAAACATCCAA-----------------------A----CAACATGTTAAG--AAC---------------C------AACA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTCGACCACCTCAACCACATCGA------CCAACACCACTGCCACCACASizeHit CountTotal NormTotal
No Reads
droTak1
CGAGACCTGCATTCCGCCGGCCAAGGGAAAGGGACGCAGGCCGAGGAGAGGTAAGCATCGCGACTCAAGCCACTGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---GATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAATC------------TCTGTAATGAAAGT--ACT---------------------------CAATCCGAAATCAATCAAATTCGA-----T-----------------------------------------------------------AACCACAC----A----AAA-------------------------------------------------------------------------------------------------------------------------------------CCACGCACGCATGTCCAC--------A------------------ACATCTAAACATC-CA-----------------------A----GAACATGTTAAG--AAC---------------CCAAAGCCACAAAAACAGCTACAGCAACCAACATAAATCT---CAGGCATGAAT---CAGCAATC------------------CGCCACCTCGAC---------CACATCGA------C------------CACTA-ASizeHit CountTotal NormTotal
No Reads
droEle1
CGAGACCTGCATTCCACCGGCCAAGGGAAAGGGACGCAGACCGAGGAGAGGTAAGCATCGCAACCCAGGCCACTGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAA-------------TCTTGTAATGGAATT--AAT-----------AC-------------TAAATCAGAGTTCGA---AATTCGA-----TA----ACTGTCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTCCTAACCACAATC--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A------------------A---CTAAACATC-AA-----------------------A----CAACATGTAAAA--AAA-----CCAA-AAAACGAAAAGCATCA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGTCACCGCCACCGCCACCCCCATATCGA------CAT------CCACCGCAATGSizeHit CountTotal NormTotal
No Reads
droRho1
CGAGACCTGCATTCCACCTGCCAAGGGAAAGGGTCGCAGACCGAGGAGAGGTAAGCATCGCAACTTAGGCCACTGTAACCAAT----------------TAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAACAA--AGCAAAG--------------CAATTTCTCTCTAA-------------TCTTGTAATGGAATT--ACT---------------------------CAATCAGAATTCA----AATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCATAC----AAA--AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------A------------------A---CTAAACATC-A------------------------A----CAACATGTTAAA--AAC---------------CAAAAGCCACA--ACCAGCTACA---ACCAACATACATCT---CAGGCATGAAT---CAACAATC------------------CGCCACCTC------------AACATCGA------C---------CACCACAACASizeHit CountTotal NormTotal
No Reads
droFic1
CGAGACCTGCATTCCGCCGGCGAAGGGAAAGGGCCGCCGGCCGAGGAGAGGTAAGCATCGCGATCTGTGCCACTGTAACCGAT----------------TAACTACAACGCAACAACCAC---AACAACAAGAACA---------------------ACA---AATACA--------GCAGCAA--AGCAAAG--------------CAATTTCTCTCTAATA------CTGAATACTGTAATGAAATT--ACC---------------------------CGATCAGAATCCAA-ATAATTCGA-----TA----ACTGCCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGTCCAC--------C------------------A---CTAAACATG-AA-----------------------A----CCACCTGTTAAG--AAC---------------CCAAAGCCACA--ACCAGCTACA---AAGAACATACATCT---CAGGCATGAAT---CAGCAATC------------------CGCCATCGCCATCGCCACCTCGACCTCGA------CCTCG---ACCACCGCCACTSizeHit CountTotal NormTotal
No Reads
droKik1
CGAGACTTGCATTCCGCCGGCCAAGGGCAAGGGACGCAGGCCGAGGCGAGGTAAGCAGTTTGATTTA--------------AT------------TAA-CAACTACAATGCAACAACCAC---AACAACAAGAACA---------------------ACAACAAATACA--------GCAACAA-TAGCAAAG--------------CAATTTTCCTCTCAACTTTAAACTTTAAACTGTAATGAAATT--AA---------------------TTCAATTCAATCAGAATCCG----AATTCGA-----TA--ACACTGCCAAAAGCCA--AT-------------------TGCCAATTGCTTCTTCTAACCTAACAC--A----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACCAC--------C------------------ACAACTAAACATC-AACATC---A---------------A----CATCATGTTAAC--AACAACAACCACAACAACCAAAAGCCACA--ACCAGCTACAACAACCAACATACATCA---CAGGCATGAAT---CAGCAATC------------------GG---------------------------------------------TAACAACASizeHit CountTotal NormTotal
No Reads
droAna3
TGAGACGTGCATTCCGCCCGCCAAGGGCAAGGGACGTCGTCCGAGGAGAGGTAAGCACTTAGTTCTAGGGAACATTA----AC----------------TGACAAGAATGCAACAACCAC---AACAACAAGAACAACAA------------TCACA---ACAAAA----TACTACAGCAACAA--TGCAAAG--------------CAATTATTCCGTAA-------------CTTTATAATGAAAATTTTCCAAATATTTAATATTA--------AATTCGATCTG----------AATGCGA-----T---------CCAAT-GCCA--AT-------------------TGCC-ATTGCTTCTTCTAACCGCACA---C----AAA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACAAC--------A------------------T---CTGAACATC-AACAAC---AATCGATA--C--CATT----GAATATGTTACCAAAAA---------------CAAAAGCCACA--ACCAGCTACA---ACCAACATACATCA---CAGGCATGAATATCCCTCCATCTGGGACATCAACTGCATCCGACACAGC------------AACTGCGA------CAACC---ACCACCACTACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................CTG----------AATGCGA-----T---------CCAAT-GCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATC-AACAAC---AATCGATA--C--C.................................................................................................................................................................................2111.001010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGGACATCAACTGCATCCG.....................................................2011.001100000
..................CGCCAAGGGCAAGGGACGTCGTCCG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
CGAAACGTGCATTCCGCCCGCCAAGGGCAAGGGACGGCGTCCGCGGAGGGGTAAGCATTTAGTTTTAGGCCACAACAACCAAC----------------TGACAACAGTGCAACAACCAC---AACAACAAGAACAACAA------------TCACA---ACCAATAC-----TACAGCAACAA--TGCAAAG--------------CAATTCTTCCGTAA-------------TTTTGTAATGAAATT--TCC--ATATTCGATACTA--------AATTTGATCTGAATGCG----AATTCGA-----TTCAACACTGCCAAT-GCCA--ATTGCCA------------ATTGCC-ATTGCTTCTTCTAACCACAC----------AA---------------------------------------------------------------------------------------------------------------------------------------ACGCACGCATGACCAC--------A------------------T-----CAACATC-AACAACATCAGTCGATA--C--CATT----GAATATGCTAAC--AAC---------------C--AAGCCACA--ACCTGCTACA---ACCAACATACATCA---CAGGCATGAAT---CCTCCTTCTGCGACATCAA------------CATC------------CTCATCGGCGAAAACAGCC---ACTGCCACGACCSizeHit CountTotal NormTotal
No Reads
dp5
CGAGACGTGTATACCGCCTGCCAAGGGCAAGGGACGGAGGCCGAGGCGTGGTAAGCATTTAGATGTAAGCAATAACAAACAAT----------------TAA---CAATGCAACAACCAC---AACAACAACAAGA---------------------AC------AACA--------GCAACAA--TGCAAAG--------------CATAATCTT--TAA-------------TTCTATACAA----------AAATATGGAATAGTATA---GTCTATTCCATATG----------TATTCTATATATTT--ACACTGCCAAT-GCCA--ATTGCCATTTGCCATTGCCATTGCC-ATTGCTTCTTCTAACCACACACACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------CCACTCACGCATGCATAC-CAATCATTCCAACAACTGCTA------CAACAAAACCTC-CA---------ACGAAAACCCA----ATTCCAATATG-------------------------CAAAAGCTACA--ACAAGCTACA---AACAACATACACCACAACAGGCATAAAT---CAACAATC------------------AACAACAAC------------GAAAACAG------CAACAGCAGCAGGGACGACASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....ACGTGTATACCGCCTGCCAAGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................CAACAACCAC---AACAACAACAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.0610010000000
......................................................................................................................................................................................................................................................................................................................................................GCCATTGCCATTGCC-ATTG....................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...........................................................................................................................AACAACAACAAGA---------------------AC------AACA--------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
CGAGACGTGTATACCGCCTGCCAAGGGCAAGGGACGGAGGCCGAGGCGTGGTAAGCATTTAGATGTAAGCAATAACAAACAAT----------------TAA---CAATGCAACAACCAC---AACAACAAGAACA---------------------AGA---ACAACA--------GCAACAA--TGCAAAG--------------CATAATCTT--GAA-------------TTCTATACAA----------AAATATGGAATAGTATA---GTCTATTCCATATG----------TATTCTATATATTT--ACACTGCCAAT-GCCA--ATTGCCATTTGCCATTGCCATTGCC-ATTGCTTCTTCTAACCACACACACAAAAAAAA-------------------------------------------------------------------------------------------------------------------------------------CCACTCACGCATGCATAC-CAATCATTCCAACAACTGCTA------CAACAAAACCTC-CA---------ACGAAAACCCA----ATTCCAATATG-------------------------CAAAAGCTACA--ACAAGCTACA---AACAACATACACCACAACAGGCATAAAT---CAACAATC------------------AACAACAAC------------GAAAACAG------CAACA---GCAGGGACGACASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TGAGACTTGTATACCACCGGCCAAGGGTAAAGGACGCCGACCCAGACGTGGTAAGAATTTTTTGTTTATTTCTA---ACACAAAGTCTAACAAGCAAACAAAACAAAATGCAACAACAACCACAACAACAACATCA---ACAAGAAAACCAACAACA---ACAAGTACA--------ATCACA---AGAACAA--------------CAACT----------------------------------------------------------------------------------------------------------------T-GCCAAAAT-------------------TGCCAATTGCTTCTTCTAATCAAAC----C----AAATTAAATACATATGTACATACATACATCTACACGCAAAATCATATTCTAAATCTGAACCATAAACAATTGAAAATTACTTAGAAAAACAAACTATATAAACTACCTACTACCCAATCCACATATATACATCAATACATACACACATGCACACACAAACACACACACACCCGCA------ACAAT---------------------CTA--------------------------A--AAC------------CAACAAAAGCTACA--ACAAGCTACC---AACAACATATA------CAGGCTTAAAT---CAACAA----------------------------------------------------------------CATCAACAACASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........ATACCACCGGCCAAGGGTAAAGGAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00110000
..........................GTAAAGGACGCCGACCCAGACGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.............................................................................................................................CAACAACATCA---ACAAGAAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.17100010
droVir3
CGAGACCTGCATACCGCCGGCCAAGGGCAAGGGCAGGCGTCCCAGACGTGGTAAGCATTTAGACATTAGCTTTA-----------------------------------GCAACAGCAAC---AACAACAACAACA---------------------AC------AATAG-----CAACAACAAACAGCAATG--------------CAAT-----------------------------AATGTACAT--GAT-----------AAAC--AAATGCTATTTAATACGAATACA----AATAC-------------ACTTGCAAT-GCCA--AA------------ATGCAATTGCA-ATTGCTTTTTCTAACCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ATGCACGCACAAA-------CCACAAGAACAACAGCAACTAGAA----CA---------------------------------ATT------C-----G--CAT------------GCCCAGCTG--CAA--ACTAGCTACA---ACAACCACAC---A---CAGGCCCCAAA---CAGCGACA------------------ATTGATTGCGGCAG------------CAA------CACCA---ACAACAACGACASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................TTAGACATTAGCTTTA-----------------------------------GCAACAGCAAC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000100000000000000000000000000000000000000000000000
.........................................................................A-----------------------------------GCAACAGCAAC---AACAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................CAACAGCAAC---AACAACAAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................ACAACAACA---------------------AC------AATAG-----CAACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000100
droMoj3
CAAGTA--------------------------GCAACAGGCAGAGCAGCAGCAGCAGCAGCAGCCGCAGCCGCCGC--------------------------------CGCAGCAGCAGC---GACAACAACTACA---------------------ACA---ACAACT--------GCAACAA--AATCAAC--------------CAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...GTA--------------------------GCAACAGGCAGAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.002200000
...................................................................................................................................................................ACAACT--------GCAACAA--AATCAAC--------------CAACT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2511.001100000
..........................................................AGCAGCCGCAGCCGCCGC--------------------------------CGCAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2520.501100000
.............................................................AGCCGCAGCCGCCGC--------------------------------CGCAGCAGCAGC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.331100000
...............................................................................................................................ACAACTACA---------------------ACA---ACAACT--------GCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2140.251100000
..........................................GAGCAGCAGCAGCAGCAGCAGCCGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.171010000
...................................................................AGCCGCCGC--------------------------------CGCAGCAGCAGC---...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.091010000
.....................................................GCAGCAGCAGCCGCAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051000010
...................................................CAGCAGCAGCAGCCGCAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
..................................................GCAGCAGCAGCAGCCGCAGCCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.051100000
...................................................CAGCAGCAGCAGCCGCAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
droGri2
CGAAACTTGTATACCGCCCGCCAAGGGCAAGGGACGACGGCCAAGACGTGGTAAGCATTCATTCAACAGACACTAACA---------------------------TTAAGCAGTAACAAC---AGCAACGAAAA-----------------------------------------------------GCAATGCAAACAAAACATAAC--------------------------------AATGCA-----------------------------------AAATCAATATGCG----AATACAA-----AT--ACATTGTCAAT-GCCAA-AATGCCAA-----AATGCCATTGCT-ATTGCTTCTTCTAATCACAC---------AAA---------------------------------------------------------------------------------------------------------------------------------------ATGCACGCACAACTAG--------A------------------G----CAAGCTAC-AA-----------------------A----CTAGCTGTTAAT--TAT---------------AAAAAGA-AC------A---ACAAC-ATCAACA-----CG---CAGGCTTCAAA---C----ATCAGCAACAATT--------GGTTACTTC------------AGCAACAA---TAGTAACA---GCAACAACAACASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTAG--------A------------------G----CAAGCTAC-AA-----------------------A----CTAGCT....................................................................................................................................................................2611.00110

Generated: 05/19/2015 at 10:55 AM