ID:

dsi_9678

 Coordinate:

2r:13624556-13624705 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-1.4 -1.1 -1.0

Flybase annnotation

three_prime_UTR [2r_13624464_13625288_-]; Antisense to three_prime_UTR [2r_13624231_13625053_+]; Antisense to exon [2r_13622792_13625053_+]; exon [2r_13624464_13625937_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
ATTATATAGACACTGCTTAAATATATATAAATATATATGATAAATATGGATTCGAATCACCGATTTGGTTGAATATAAAAAAAAAATTGATTAAAATGACGAATTTGACTTAACATTCATAAGAACGCATCCGTTGGGATTCCATTGGTCCATTTCTTACACAAAGCTTGAATCAAATGTTTTTCTTTTTCCACTTGCAGGACGCCAAATGGAATATCCTGGATATTCTTCTTCGTAACGTAGTCTATAA
**********************************************************(((.....)))....................................************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR902009
testis
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
............................................TATGGATTCGAATCACCGATT......................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
.......................................ATAAATATGGATTCGAATCAC.............................................................................................................................................................................................. 21 0 1 2.00 2 1 1 0 0 0 0 0 0
............................................TATGGATTCGAATCACCGATTTGGT..................................................................................................................................................................................... 25 0 1 2.00 2 0 0 2 0 0 0 0 0
..........................................AATATGGATTCGAATCACCGA........................................................................................................................................................................................... 21 0 1 2.00 2 0 1 1 0 0 0 0 0
....................................ATGATAAATATGGATTCGAATC................................................................................................................................................................................................ 22 0 1 2.00 2 0 2 0 0 0 0 0 0
...........................................ATATGGATTCGAATCACCGAT.......................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0
...........................................ATATGGATTCGAATCACCGATT......................................................................................................................................................................................... 22 0 1 2.00 2 0 0 0 2 0 0 0 0
......TAGACACTGCTTAAATATAAAA.............................................................................................................................................................................................................................. 22 2 1 1.00 1 0 1 0 0 0 0 0 0
....................................ATGATAAATATGGATTCGAAT................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................AATTGATTAAAATGACGAATT................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................ACCGATTTGGTTGAATATAAA........................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................................ATATGGATTCGAATTACCGAT.......................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0
ATTATATAGACACTGCTTAAA..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
...............................................................................................ATGACGAATTTGACTTAACAT...................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...................................TATGATAAATATGGATTCGAATCACCGA........................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................ATTAAAATGACGAAT.................................................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................AATATGGATTCGAATCACCGAT.......................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................TTCGAATCACCGATTTGGTTG................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................TGATAAATATGGATTCGAATCACCGA........................................................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTCTTCTTCGTAACGTAGTCT.... 21 0 1 1.00 1 0 0 0 0 1 0 0 0
..............................ATATATATGATAAATATGGAT....................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0
......................................................AATCACCGATTTGGTTGAATA............................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................ATTCGAATCACCGATTTGGTT.................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................TTTGGTTGAATATAAAAAAA....................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0
....................................................CGAATCACCGATTTGGTTGAA................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..............................................TGGATTCGAATCACCGA........................................................................................................................................................................................... 17 0 1 1.00 1 1 0 0 0 0 0 0 0
............................................................CGATTTGGTTGAATATAAAAAAAAAAAA.................................................................................................................................................................. 28 2 1 1.00 1 0 0 1 0 0 0 0 0
........................................................................................................................AAGAACGCATCCGTTGGGATT............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...............................................................TTTGGTTGAATAAAAAAAAA....................................................................................................................................................................... 20 1 4 0.50 2 0 1 1 0 0 0 0 0
................................................................TTGGGTGAATATAAAAAAAAAAA................................................................................................................................................................... 23 2 4 0.25 1 0 0 0 0 0 0 1 0
...............................................................TGCGGATGAATATAAAAAAAAA..................................................................................................................................................................... 22 3 19 0.21 4 0 0 0 0 0 4 0 0
......................................................................................................................................................................TTTGAACCAAACGTTTTTCTTTT............................................................. 23 3 7 0.14 1 0 0 0 0 0 0 0 1
...............................................................TTTGATTGAATGTAGAAAAAAAA.................................................................................................................................................................... 23 3 8 0.13 1 0 0 0 0 0 1 0 0
............................................................CAAATTGGCTGAATATAAAAAAAA...................................................................................................................................................................... 24 3 10 0.10 1 0 0 1 0 0 0 0 0
.................................................................TGGTTGAATGTAAAAA......................................................................................................................................................................... 16 1 12 0.08 1 0 0 1 0 0 0 0 0
................................................................................................TGACGAACTTGACTT........................................................................................................................................... 15 1 14 0.07 1 0 0 1 0 0 0 0 0
.....................................................................TGAGTATAAAAAAAAAA.................................................................................................................................................................... 17 1 20 0.05 1 0 0 0 0 0 1 0 0
................................................................TTGGTTAAATATAAAAA......................................................................................................................................................................... 17 1 20 0.05 1 0 1 0 0 0 0 0 0

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
TAATATATCTGTGACGAATTTATATATATTTATATATACTATTTATACCTAAGCTTAGTGGCTAAACCAACTTATATTTTTTTTTTAACTAATTTTACTGCTTAAACTGAATTGTAAGTATTCTTGCGTAGGCAACCCTAAGGTAACCAGGTAAAGAATGTGTTTCGAACTTAGTTTACAAAAAGAAAAAGGTGAACGTCCTGCGGTTTACCTTATAGGACCTATAAGAAGAAGCATTGCATCAGATATT
*************************************************************************************************************************************************(((.....)))....................................********************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 SRR902009
testis
........................................................................................................................................................................................................................AGGACCTATAAGAAGAAGCATTGCAT........ 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
...................................................................................................................AAGTATTCTTGCGTAGGCAACCCT............................................................................................................... 24 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGAAGAAGCATTGCATCAGATAT. 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................GCGTAGGCAACCCTAAGGTAACCAGGT.................................................................................................. 27 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.....TATCTGTGACGAATTTATAT................................................................................................................................................................................................................................. 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGGTGAACGTCCTGCGGTTTACCTTAT.................................. 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................AAAGGTGAACGTCCTGCGGTTTACCT..................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GGTAACCAGGTAAAGAATGTG........................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CTAAGGTAACCAGGTAAAGAATGT......................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGGTGAACGTCCTGCGGT........................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................AAGGTAACCAGGTAAAGAATGTGTTT..................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................AGTTTACAAAAAGAAAAAGGTGAACGT................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......TCTGTGACGAATTTATATATA.............................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....ATATCTGTGACGAATTTAT................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.AATATCTCTGTGACGAATTTA.................................................................................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATAGGACCTATAAGAAGAAGCATTGCAT........ 29 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................GTAAGTATTCTTGCGTAG....................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................TGGCTAAACCAAGTTATATTT........................................................................................................................................................................... 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................ATTTTACTGCCTAAACTGAAT.......................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................TTGCGTAGGCAACCCTAAGGTAACCAGGT.................................................................................................. 29 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....TATCTGTGACGAATTTATATA................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................TGTAAGTATTCTTGCGTAGGCAACCC................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................AGGCAAACTTAAGGTAACCAGTTAAAG.............................................................................................. 27 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...........................................................GGCTAAACCAACTTATATTTTTTTTTT.................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................GTAGGCAAACCTAAGGTAACCAGGT.................................................................................................. 25 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................TGTAAGTATTCTTGCGTAGGCAACC................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AGGACCTATAAGAAGAAGCATTGCA......... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGGCAACCCTAAGGTAACCAGGTAA................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................GGCAACCCTAAGGTAACCAGGT.................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TTACAAAAAGAAAAAGGTGAACGT................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................AAACTGAATTGTTAGTATTCTTGCGT......................................................................................................................... 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.AATATATCTGTGACGAATT...................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................ACAAAAAGAAAAAGGTGAACGTCCTGC.............................................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................AGGACCTATAAGAAGGAGCATTGCAT........ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................................................................................ATTTTACTGCTTAAACTGAAT.......................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................AGAAAAAGGTGAACGTCCTG............................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................AAGAAGAAGCATTGCATCAGATATT 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
....................................................................................................................................CAACCCTAAGGTAACCAGGTAAAGAAT........................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................AGAAGAAGCATTGCA......... 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................AATTTTACTGCTTAAACTGAATTGT....................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................TAAGGTAACCAGGTAAAGAATGTGT....................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................ATTCTTGCGTAGGCAACCCTAAGGT.......................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........TGTGACGAATTTATATATATT............................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................GTAAGTGTTCTTGCGTAGGCA.................................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................................................CCTGCGGTTTACCTTATAGGACCTAT......................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................AAGTATTCTTGCGTAGGCAACCCTA.............................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................AGGCAACCCTAAGGTAACCAGGTAAA............................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..ATATATCTGTGACGAATTTAT................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TATAGGACCTATAAGAAGAAGCATTG........... 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................AGGTGAACGTCCTGCGGTTTA........................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.................................................TAAGCTTAGTGGCTAAACCAA.................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GGTGAACGTCCTGCGGTTTTCCTT.................................... 24 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
TAATATATCTGTGACGAATTT..................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................GGACCTATAAGAAGAAGCATTGCAT........ 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
................................................................................................................TGTAAGTATTCTTGCGTAGGCAAACC................................................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................AAGTATTCTTGCGTACGCAACCCT............................................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................ACCTAAGCTTGGTTGCT........................................................................................................................................................................................... 17 2 8 0.63 5 0 1 0 0 4 0 0 0 0 0
...............................................................................................................................................................GTGTTTCGAACATAGTTT......................................................................... 18 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................AGAAGAAGCAGTGCATCT...... 18 2 9 0.33 3 0 0 0 0 3 0 0 0 0 0
..............CGAACTGATATCTATTTATATA...................................................................................................................................................................................................................... 22 3 6 0.33 2 0 0 0 1 0 0 0 0 1 0
................................................CTAAGCTTGGTGGCT........................................................................................................................................................................................... 15 1 6 0.33 2 0 0 0 0 0 0 2 0 0 0
...............................................CCTAAGCTTGGTGGCT........................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................AAAAAGGTCAAAGTTCTGCGGT........................................... 22 3 5 0.20 1 0 0 1 0 0 0 0 0 0 0
..............................................ACCTAAGCTTGGTCGCT........................................................................................................................................................................................... 17 2 20 0.15 3 0 0 0 0 3 0 0 0 0 0
........TTGTGACGTATTTATATTTATTT........................................................................................................................................................................................................................... 23 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0
..............................................ACCTAAGCTTGGTCGC............................................................................................................................................................................................ 16 2 20 0.10 2 0 0 0 0 0 0 2 0 0 0
..............................................TCCTAAGCTTGGTGGCT........................................................................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................AAAAAAAAAAGGTGAAGGTTCT................................................ 22 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0
..............................................................................................................................................................TGTTTTTCGAACGTAGTTT......................................................................... 19 2 16 0.06 1 0 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................TTTCGAACGTAGTTT......................................................................... 15 1 20 0.05 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................TAAGGTGAAGAGGTAAAGAA............................................................................................ 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:13624506-13624755 - dsi_9678 ATTATATAG--ACACTGCTTAAATATATATAAA------TATA-----TATGATAAAT------ATG--GAT--T-----------CGAATCACCGATTTGGTTGAATATAAAA-------------------------AAAAAATTG-A-TTAAAATGACGAATTTGA---CTTAA----CATTCATAAGAAC---GCATCCGT------TGGGATTCCATTGG-------TCCATTTCTTACACAAAGCTT-----GAATC----AAATG-------TTTTTCTTTTTCCACTTGCAGGACGC--CAAATGGAATATCCTGGATATT--CTTCTTCGTAACG--TAGTCTATA-------------A-----
droSec2 scaffold_1:10462015-10462262 - ATTATGTAG--ACACTGCTTAAATATATATAAA------TATA-----TATGATAAAT------ATG--GAT--T-----------CGAATCACCGATTTGGATGAATATAAAAAAAATTG----------------------------A-TTAAAATGACGAATTTGA---CTTAA----CAATCATAAGAAC---GCATCCGT------TTGGATTCCATTGG-------TCCATTTCTTAAACAAAGCTT-----GAATC----AAATG-------TTTTTCTTTTTCCACTTGCAGGACGC--CAAATGGAATATCCTGGATATT--CTTCTTCGTAACG--TAGTCTATA-------------A-----
dm3 chr2R:12953519-12953772 - ATTATATAG--ACACAGCTTAAATATATATAAA------TATA-----TATGATAAAT------ACG--GAT--T-----------CGAATCACCGATTTGGTTGAATATAAAA-------------------------AAAAACTTG-A-TTAAAATGTCGAATTTGA---CTTAA----CATTCATATGAAC---ACATCCGT------TTGAATTCCATTGG-------TCAATTTCTTACACAAAGCTT-----CAATC----AAATG-------TTTTTCTTTTTCAATTTGCAGGACGC--CAAATGGAATATCTTGGATATT--CTTCTTCATAACG--TAATATTAAGCTG---------A-----
droEre2 scaffold_4845:12888618-12888865 + ATTATATAG--ACACTGCTTAAATATATATAAA------TATA-----TATGATAAAT------CCG--GAT--T-----------CGCATCACCGATTTGGTTGAATATAAAAAAATTAA----------------------------A-TTTAAACGACGATTTTGA---CTTAA----CATTCATGAGAAC---ACATCCGT------TTGAATTTCATTGG-------TCCATTTCTTACACAAAGCTT-----GAATC----AAATG-------TTTTCCTTTCTCCATTTGCAGGACAC--CAAATGGAATATCTTGGGTATT--CTTCTTCGTAACT--TAATCTATG-------------A-----
droYak3 2R:18513548-18513797 + ATTATATAG--ACACTGCTTAAATATATATTAA------TATA-----TATGATAAAT------CCG--GAT--T-----------CGCATTACCAATTTGGTTGAATATAAAA-------------------------AAAAATGGA-A-TTTAGACAAAGATTTTGA---CTTAA----CATTCATGAGAAC---ATATTCGT------TTGGATTTCATTGG-------TCCATTTCTTACACAAAACTT-----GAATA----AAATG-------TTTTCCTTTCTCCATTTGCAGGACAC--CAAATGGAATATCTTGGGTATT--CTTCTTCGTAAAT--CAGTCTATG-------------A-----
droEug1 scf7180000409672:2164468-2164729 + ATTATATAG--ACACTGCTTAAATATA------TAAA--TATA-----TAT-------GATAATGCGCGCA--TACACA-TTGATTTGAATCACCGATTCGATTGAATATAAAA--GTTGGT-----------------------------TAAAAAAGTCCGATTTGA---CATAACATTCATTCATGAAAAC---TCATCCCT------TTGGATTAGATTGG-------TCAATTTCTTACACAAATCTT-----ATATC----AACTA-------TTTCTATTTCTTCATTTGCAGGCCAT--TGAACGGAATATCATGGGTATTA-TTTCTTCGCA-----TAATCCAT--------TAAGCGA-----
droBia1 scf7180000301754:5202701-5202938 - ATTATATAG--ACCCTGCTTAAATATA------TATA-----A-----TAC-------GATAATGCG--CAT--TCACA--------------TTGACTTGGTAGATCATAAAA--CTTGGT-----------------------------TTAAAACGTCGAAGTTGA---CTTAA----CATTCATGAGAAC---TCATTCGT------TCGGATTTGGTGGG-------TCCATTTCTTAGACAAAACTT-----A-ATG----ACTTC-------TTTTTATCTTTTCACTTTCAGGCCAT--TAAATGAAATATCTTGGTTACTTTCTTCTTCGTAACG--CAGCCTTTG-------------A-----
droTak1 scf7180000415243:229957-230206 - ATTATATAG--ACACTGCTTAAATATA------TATATATATAA----TAC-------GATAATGCG--CAT--TCACA--------------TCGATTTGGTTGAATATAAAA--CTTGGT-----------------------------TTAAAACGTCGAAGTTGA---CTTAA----CATTCATGAAAAC---TCATACGT------TTGGATTTGATTGG-------TCCATTTCTTACACAAATCTT-----ATATC----GAATG-------TTTTTCTTCTTTCATTTTCAGGGCAT--TAAATGAAATATCTTGG---------------TAACGCATAGTCTTAGACTGCATTAAGCGATACAT
droEle1 scf7180000491214:1379654-1379912 + ATTATATAG--ACACTGCTTAAAAATA------TAAATATATA-----TATATATAT-GAAAGTG----CA--TTCACA-TCGATTTGAATCACCGATTTGGTACAATATAAAAAACT---------------------------------TTAAAACGTCGAAGTTGA---CTTAA----CATTCATGAGAAC---TCATACGT------TTGGATTTAACAGG-------TCCAATTCTTACATAAATCTT-----AAATC----AAATG-------TTTTTCTTTCTTCATTCGCAGGCCAT--TAAATGGAGTATCAAGGGTATTTTCTTCTTCGTAACG--TAGTCTCAG-------------A-----
droRho1 scf7180000780084:366869-367124 + ATTATATAG--ACACTGCTTAAATATA------AAT------A-----TAT-------GATAATG----CA--TACACA-TCGATTTGAATCACCGATTTGGTTGGATATAAAA--CT---------------------------------TTAAAACGTCGAAGTTGA---ATTAA----CATTCATGAGAAC---TCACACGT------TTGGATTTGACTGG-------TCCATTTCTTAAACAAATCTT-----ATTTC----AAATG-------ATTTTCTTTCTTCATTCGCAGGCCAT--TAAATGGATTATCAAGAGTATT--CTTCTTCGTAACG--TAGTCTTAGACTGCATTAAACAA-----
droFic1 scf7180000453948:2476214-2476467 + ATTATATAG--ACACCGCTTAAATATA------TACG--TATA-----TAT-------GATAATG----CA--TACACA-TCGATTCGTATCAACGATTTGGTTTAATATAAAA--CTTGGC-----------------------------TTAAAACGTCGAAGTTGA---CTTAA--CACATTCATGATAAC---TCATCCGT------TTGGATTTGATTGG-------TCCATTTCTTACACAAATCTTATT--ATATT----GAA---------TTTTTCTGTTTTCATTTGCAGGCTTT--TAAATGGAGTGTTAAGGTTGTT--ATTCATCGTAACG--CAGTCCTAG-------------A-----
droKik1 scf7180000302470:1392520-1392658 - ATTATATAG--ACACTGCTTAAATATA------TATATATAC--------------------------------------------------------------GAATATAAAACATTTCGT-----------------------------TTAAAACGTCCCAGTTGGTTCCTTAA----CCCTTGTAGGATC---TC-----------------TTTGATTAG-------TCCACTTCTTATAC----------------C----GAATA-------TCTTTCTCTTTTTTCTT------------------------------------------------------------------------------
droAna3 scaffold_13266:13646797-13647076 + ATTATGTAG--ACATTGCTTAAATATA------TAAATATATA------ATGATAT--AATATTA----GA--AACGCA-TCGACTTCAATCACCGATTCGGTTGAATATAAAA--TATGGTTTAAAA-AACA--AAAAAAAAAA----A-AAGAAACGTCGCAGATAA---CTAAA----CATTCATGA-AAC---TCATCTTCTGAAACTTGTACTTCTTTTG----------------TCGATAAATTGT-----AAGTTAATATTCTC-------TTCCTTGTTTTTCATTTGCAGACATT--TGAGTGGAATATCCGCGGTATTCTTCTGTTTGCAGTT--TAATCTAAG-------------A-----
droBip1 scf7180000396759:2489847-2490096 - ATTATGTAG--ACATTGCTTAAATATA------TAAATATATAA----TGATATAATA------TTA--GAA--G-----------C-----------------GAATATAAAA--CATTGTTAAAAA----A--AGAGAAAAAA----A-AAGAAACGTCGCAGCTAA---CTAAA----CATTCATGA-AAC---TCATCCGT------TTGTACTTCTTTTG-------TCGGTAATTTGTA--------------AGTTAATATTCTCTTCCTTGTTT-TTTTTTTTCATTTGCAGACCTT--TGAGTGGAATATCAGTGGTATCCTTCTGTTTGCAGTT--TATTCCAAG-------------A-----
dp5 3:6193563-6193743 - ATTATATAGAGACACTGCTTAAATATA------TATAC-TCTA-----AAT-------GATAATG----CT--TAAACAATTGCATCTGACTATCAATCCGGTTGAGCGTACCA-------------------------AA-------------------------CGA---C-----ATCCATTCATGGGAACGACTCATCC--------------------GGTCCGAGG--AATTTCTCAAAT----------------A----ATACG-------TTCTTTTCCTTTCGTTTACAGTGAAA--TAAATGGA-----------------------------------------------------------
droPer2 scaffold_2:6408406-6408588 - ATTATATAGAGACACTGCTTAAATATA------TATAC-TCTA-----AAT-------GATAATG----CT--TACACAATTGCATCTGACTATCAATCCGGTTGAGCGTACCA-------------------------AA-------------------------CGA---C-----ATCCATTCATGGGAACGACTCATCC--------------------GGTCCGAGG--AATTTCTCAAATAATACCT------------------A-------TTCTTTTCCTTTCGTTTACAGTGAAA--TAAATGGA-----------------------------------------------------------
droWil2 scf2_1100000004585:5471434-5471540 - ATTAAAAGG--AAACTCTTTAAACGTA------TATT---------------GAAAAT------ATT--TAT--T-----------ACTTTTAAAATTTTACTCTAAGAAAAAA-------------------------AAAAAAATA-A-TTAAAAATTTTAACTTGA---ATTCG----CGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12723:4017308-4017458 - TTTATATA-------TGCTTAAATATACATATA------TATA-----TATATTAAAA-ATACTATATATG--TATAAA-CAAAATCGAATTAAACACTAGACTGCAGCCAAA--------T------TGAAAATGATAAAAAATTGAAATTTAAAAC------------------------------------------------------------------------------------------------------------------------------------------GCAGAACTG--CAATACAAAAATCGTAGGAA-----------------------------------------------
droMoj3 scaffold_6500:11107839-11107963 - TCTATATAT--ACACA-------TATATATAAA------TATAATTTAAGA-------AATATTTTG--CACTTACATA--------------TATACTTCGAGAA----------------------------------------------------------------------------------------------------------------------------------TTCTTAAGAT----------------A----AATCA-------ATTCTATATATAGATTTGTATGAATA--TTAATGAAAAAATAT----------------------------------------------------
droGri2 scaffold_15203:10790625-10790831 + A--------------------AATATATATACA------TATA-----TATCGTAAAT------ATC--GAA--T-----------AAAATGAAATATCGAATTTTATAT--TG--GCTGGT------TAGAAATGA---AGCAATGCAT-TGTGCATAG--------------------------------CC---AACTTCGG------TTCAGTTCAGTTAT-------TCAGTTGC---CACTGATCCTAATTCATGCA----AAATG-------GTTTTTTTTTTTCACTCAAGGAC-ACACACAGTTGGAGAT---AGAAATT--CTTTTGCGTA---------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ATTATATAG--ACACTGCTTAAATATATATAAA------TATA-----TATGATAAAT------ATG--GAT--T-----------CGAATCACCGATTTGGTTGAATATAAAA-------------------------AAAAAATTG-A-TTAAAATGACGAATTTGA---CTTAA----CATTCATAAGAAC---GCATCCGT------TGGGATTCCATTGG-------TCCATTTCTTACACAAAGCTT-----GAATC----AAATG-------TTTTTCTTTTTCCACTTGCAGGACGC--CAAATGGAATATCCTGGATATT--CTTCTTCGTAACG--TAGTCTATA-------------A-----SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................T------ATG--GAT--T-----------CGAATCACCGATT...................................................................................................................................................................................................................................................................................2112.00200000000002000000
....................................................ATAAAT------ATG--GAT--T-----------CGAATCAC........................................................................................................................................................................................................................................................................................2112.00200000010001000000
.........................................................T------ATG--GAT--T-----------CGAATCACCGATTTGGT...............................................................................................................................................................................................................................................................................2512.00200000002000000000
.......................................................AAT------ATG--GAT--T-----------CGAATCACCGA.....................................................................................................................................................................................................................................................................................2112.00200000011000000000
.................................................ATGATAAAT------ATG--GAT--T-----------CGAATC..........................................................................................................................................................................................................................................................................................2212.00200000020000000000
........................................................AT------ATG--GAT--T-----------CGAATCACCGAT....................................................................................................................................................................................................................................................................................2112.00200000000002000000
........................................................AT------ATG--GAT--T-----------CGAATCACCGATT...................................................................................................................................................................................................................................................................................2212.00220000000000000000
.................................................ATGATAAAT------ATG--GAT--T-----------CGAAT...........................................................................................................................................................................................................................................................................................2111.00100000000001000000
...............................................................................................................................................AATTG-A-TTAAAATGACGAATT................................................................................................................................................................................................................2111.00100000000001000000
............................................................................................ACCGATTTGGTTGAATATAAA.....................................................................................................................................................................................................................................................................2111.00100000000001000000
ATTATATAG--ACACTGCTTAAA...............................................................................................................................................................................................................................................................................................................................................................2111.00100000010000000000
............................................................................................................................................................ATGACGAATTTGA---CTTAA----CAT..............................................................................................................................................................................................2111.00100000000001000000
................................................TATGATAAAT------ATG--GAT--T-----------CGAATCACCGA.....................................................................................................................................................................................................................................................................................2811.00100000001000000000
.....................................................................................................................................................A-TTAAAATGACGAAT.................................................................................................................................................................................................................1511.00100000000001000000
.......................................................AAT------ATG--GAT--T-----------CGAATCACCGAT....................................................................................................................................................................................................................................................................................2211.00100000000001000000
.......................................................................T--T-----------CGAATCACCGATTTGGTTG.............................................................................................................................................................................................................................................................................2111.00100000000001000000
..................................................TGATAAAT------ATG--GAT--T-----------CGAATCACCGA.....................................................................................................................................................................................................................................................................................2611.00100000010000000000
.......................................................................................................................................................................................................................................................................................................................................TT--CTTCTTCGTAACG--TAGTCT......................2111.00100010000000000000
................................A------TATA-----TATGATAAAT------ATG--GAT--............................................................................................................................................................................................................................................................................................................2111.00100000010000000000
........................................................................................AATCACCGATTTGGTTGAATA.........................................................................................................................................................................................................................................................................2111.00100000000001000000
......................................................................AT--T-----------CGAATCACCGATTTGGTT..............................................................................................................................................................................................................................................................................2111.00100000000001000000
.................................................................................................TTTGGTTGAATATAAAA-------------------------AAA........................................................................................................................................................................................................................................2011.00100000010000000000
......................................................................................CGAATCACCGATTTGGTTGAA...........................................................................................................................................................................................................................................................................2111.00100000000001000000
.................................................................TG--GAT--T-----------CGAATCACCGA.....................................................................................................................................................................................................................................................................................1711.00100000000001000000
..............................................................................................CGATTTGGTTGAATATAAAA-------------------------AAAAAAAA...................................................................................................................................................................................................................................2811.00100000001000000000
............................................................................................................................................................................................AAGAAC---GCATCCGT------TGGGATT............................................................................................................................................................2111.00100000000001000000
droSec2
ATTATGTAG--ACACTGCTTAAATATATATAAA------TATA-----TATGATAAAT------ATG--GAT--T-----------CGAATCACCGATTTGGATGAATATAAAAAAAATTG----------------------------A-TTAAAATGACGAATTTGA---CTTAA----CAATCATAAGAAC---GCATCCGT------TTGGATTCCATTGG-------TCCATTTCTTAAACAAAGCTT-----GAATC----AAATG-------TTTTTCTTTTTCCACTTGCAGGACGC--CAAATGGAATATCCTGGATATT--CTTCTTCGTAACG--TAGTCTATA-------------A-----SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
........................................................AT------ATG--GAT--T-----------CGAATCACCGAT....................................................................................................................................................................................................................................................................................2111.0010001
dm3
ATTATATAG--ACACAGCTTAAATATATATAAA------TATA-----TATGATAAAT------ACG--GAT--T-----------CGAATCACCGATTTGGTTGAATATAAAA-------------------------AAAAACTTG-A-TTAAAATGTCGAATTTGA---CTTAA----CATTCATATGAAC---ACATCCGT------TTGAATTCCATTGG-------TCAATTTCTTACACAAAGCTT-----CAATC----AAATG-------TTTTTCTTTTTCAATTTGCAGGACGC--CAAATGGAATATCTTGGATATT--CTTCTTCATAACG--TAATATTAAGCTG---------A-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................ATGATAAAT------ACG--GAT--T-----------CGAAT...........................................................................................................................................................................................................................................................................................2118.0080000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000100010100200
....................................................ATAAAT------ACG--GAT--T-----------CGAATCAC........................................................................................................................................................................................................................................................................................2115.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000
.................................................................................................................................................TTG-A-TTAAAATGTCGAATTTGA---CTT.......................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................AAAAACTTG-A-TTAAAATGTCGAAT.................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TATGATAAAT------ACG--GAT--T-----------CGAATCACC.......................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AT------ACG--GAT--T-----------CGAATCACCGAT....................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................CTTAAATATATATAAA------TATA-----T.....................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................G-A-TTAAAATGTCGAATTTGA---CTTAA----C................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TTGGATATT--CTTCTTCATAAC...............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................AATTTGCAGGACGC--CAAATGG............................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................ATGATAAAT------ACG--GAT--T-----------CGAATC..........................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000
...........................................................................................................................................AAAAACTTG-A-TTAAAATGTCG....................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................TTGAATTCCATTGG-------TCAATTT.......................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AAT------ACG--GAT--T-----------CGAATCACCGA.....................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................TAAAT------ACG--GAT--T-----------CGAATCACC.......................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000
.................................................ATGATAAAT------ACG--GAT--T-----------CGAATCACCGA.....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................A-----TATGATAAAT------ACG--GAT--T-----------CG..............................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TTAAAATGTCGAATTTGA---CTT.......................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
.......................................TATA-----TATGATAAAT------ACG--GAT--T-----------CGAATC..........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................................................................................................................................ATTCCATTGG-------TCAATTTCTT....................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TTGG-------TCAATTTCTTACACAAAGCTT-----C...................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AAAACTTG-A-TTAAAATGT......................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................TGA---CTTAA----CATTCATATGAAC---.................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................GATAAAT------ACG--GAT--T-----------CGAATCA.........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.........................................................T------ACG--GAT--T-----------CGAATCACCGATTTGGTTG.............................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CTTG-A-TTAAAATGTCGAATTTG..............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................CG--GAT--T-----------CGAATCACCGATTTGGTTGA............................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................T--T-----------CGAATCACCGATTTGGTTGAA...........................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AA------TATA-----TATGATAAAT------ACG--GAT--T-----------CGAAA...........................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000
.......................................TATA-----TATGATAAAT------ACG--GAT--T-----------CGAAA...........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......TAG--ACACAGCTTAAATATATA.........................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GAT--T-----------CGAATCACCGATTTGGTTG.............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................TTGCAGGACGC--CAAATGGAAT.........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................A-TTAAAATGTCGAATTTGA---CT........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................TTGGTTGAATATAAAA-------------------------AAAAA......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................AAT------ACG--GAT--T-----------CGAATCACCGATTTGG................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................A-----TATGATAAAT------ACG--GAT--T-----------CGAT............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
................................................................................................................................................................................................................................G-------TCAATTTCTTACACAAAGCT..........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................TG-A-TTAAAATGTCGAATTTGA---..........................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TAAA------TATA-----TATGATAAAT------ACG--G................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................TTAAAATGTCGAATTTGA---..........................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................ATTCATATGAAC---ACATCCGT------T..................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000
..TATATAG--ACACAGCTTAAATA.............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TATA-----TATGATAAAT------ACG--GAT--T-----------CGAAT...........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
..............................................................................................................................................................................................................................TGG-------TCAATTTCTTACACAAAG............................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................TTTTTCAATTTGCAGGACGC--C..................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..................................................TGATAAAT------ACG--GAT--T-----------CGAATCACCGAT....................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................TGCAGGACGC--CAAATGGAATA........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
....................................................ATAAAT------ACG--GAT--T-----------CGAATCACC.......................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.......................................TATA-----TATGATAAAT------ACG--GAT--T-----------................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AAAATGTCGAATTTGA---CTTAA----CATT.............................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TATAAA------TATA-----TATGATAAAT------ACG--GAT--............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TATGATAAAT------ACG--GAT--T-----------CGAAA...........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................AAAATGTCGAATTTGA---CTTAA----CAT..............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CGT------TTGAATTCCATTGG-------TCAATTTC......................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................TATAAAA-------------------------AAAAACTTG-A-TTAAAATGTC.....................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CGT------TTGAATTCCATTGG-------TCACC.........................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................TA-----TATGATAAAT------ACG--GAT--T-----------CGA.............................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...................................................................................................................................................................ATTTGA---CTTAA----CATTCATATG.......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TTTGA---CTTAA----CATTCATATGAA.....................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GAT--T-----------CGAATCACCGATTTGGT...............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................CATCCGT------TTGAATTCCATTGG-------T.............................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CATATGAAC---ACATCCGT------TTGA...............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................A------TATA-----TATGATAAAT------ACG--GAT--T-----------CGAAA...........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................TTTTCTTTTTCAATTTGCAGGACGC--...................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................AAAACTTG-A-TTAAAATGTCGAAA.................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................T-----CAATC----AAATG-------TTTTTCTTTTTCAATT...............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................TTTCTTTTTCAATTTGCAGG.........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................ATTTGGTTGAATATAAAA-------------------------A..........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................A-----TATGATAAAT------ACG--GAT--T-----------CGA.............................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TTTGA---CTTAA----CATTCATATGA......................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...............................................................................................................................................ACTTG-A-TTAAAATGTCGAATTTGA---CT........................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ATATAG--ACACAGCTTAAATAT............................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CTTG-A-TTAAAATGTCGAATTTGA---CT........................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ATTATATAG--ACACTGCTTAAATATATATAAA------TATA-----TATGATAAAT------CCG--GAT--T-----------CGCATCACCGATTTGGTTGAATATAAAAAAATTAA----------------------------A-TTTAAACGACGATTTTGA---CTTAA----CATTCATGAGAAC---ACATCCGT------TTGAATTTCATTGG-------TCCATTTCTTACACAAAGCTT-----GAATC----AAATG-------TTTTCCTTTCTCCATTTGCAGGACAC--CAAATGGAATATCTTGGGTATT--CTTCTTCGTAACT--TAATCTATG-------------A-----SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....................................................TAAAT------CCG--GAT--T-----------CGCATCACCGATT...................................................................................................................................................................................................................................................................................2511.0011000000
droYak3
ATTATATAG--ACACTGCTTAAATATATATTAA------TATA-----TATGATAAAT------CCG--GAT--T-----------CGCATTACCAATTTGGTTGAATATAAAA-------------------------AAAAATGGA-A-TTTAGACAAAGATTTTGA---CTTAA----CATTCATGAGAAC---ATATTCGT------TTGGATTTCATTGG-------TCCATTTCTTACACAAAACTT-----GAATA----AAATG-------TTTTCCTTTCTCCATTTGCAGGACAC--CAAATGGAATATCTTGGGTATT--CTTCTTCGTAAAT--CAGTCTATG-------------A-----SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
ATTATATAG--ACACTGCTTAAATATA------TAAA--TATA-----TAT-------GATAATGCGCGCA--TACACA-TTGATTTGAATCACCGATTCGATTGAATATAAAA--GTTGGT-----------------------------TAAAAAAGTCCGATTTGA---CATAACATTCATTCATGAAAAC---TCATCCCT------TTGGATTAGATTGG-------TCAATTTCTTACACAAATCTT-----ATATC----AACTA-------TTTCTATTTCTTCATTTGCAGGCCAT--TGAACGGAATATCATGGGTATTA-TTTCTTCGCA-----TAATCCAT--------TAAGCGA-----SizeHit CountTotal NormTotal
No Reads
droBia1
ATTATATAG--ACCCTGCTTAAATATA------TATA-----A-----TAC-------GATAATGCG--CAT--TCACA--------------TTGACTTGGTAGATCATAAAA--CTTGGT-----------------------------TTAAAACGTCGAAGTTGA---CTTAA----CATTCATGAGAAC---TCATTCGT------TCGGATTTGGTGGG-------TCCATTTCTTAGACAAAACTT-----A-ATG----ACTTC-------TTTTTATCTTTTCACTTTCAGGCCAT--TAAATGAAATATCTTGGTTACTTTCTTCTTCGTAACG--CAGCCTTTG-------------A-----SizeHit CountTotal NormTotal
No Reads
droTak1
ATTATATAG--ACACTGCTTAAATATA------TATATATATAA----TAC-------GATAATGCG--CAT--TCACA--------------TCGATTTGGTTGAATATAAAA--CTTGGT-----------------------------TTAAAACGTCGAAGTTGA---CTTAA----CATTCATGAAAAC---TCATACGT------TTGGATTTGATTGG-------TCCATTTCTTACACAAATCTT-----ATATC----GAATG-------TTTTTCTTCTTTCATTTTCAGGGCAT--TAAATGAAATATCTTGG---------------TAACGCATAGTCTTAGACTGCATTAAGCGATACATSizeHit CountTotal NormTotal
No Reads
droEle1
ATTATATAG--ACACTGCTTAAAAATA------TAAATATATA-----TATATATAT-GAAAGTG----CA--TTCACA-TCGATTTGAATCACCGATTTGGTACAATATAAAAAACT---------------------------------TTAAAACGTCGAAGTTGA---CTTAA----CATTCATGAGAAC---TCATACGT------TTGGATTTAACAGG-------TCCAATTCTTACATAAATCTT-----AAATC----AAATG-------TTTTTCTTTCTTCATTCGCAGGCCAT--TAAATGGAGTATCAAGGGTATTTTCTTCTTCGTAACG--TAGTCTCAG-------------A-----SizeHit CountTotal NormTotal
No Reads
droRho1
ATTATATAG--ACACTGCTTAAATATA------AAT------A-----TAT-------GATAATG----CA--TACACA-TCGATTTGAATCACCGATTTGGTTGGATATAAAA--CT---------------------------------TTAAAACGTCGAAGTTGA---ATTAA----CATTCATGAGAAC---TCACACGT------TTGGATTTGACTGG-------TCCATTTCTTAAACAAATCTT-----ATTTC----AAATG-------ATTTTCTTTCTTCATTCGCAGGCCAT--TAAATGGATTATCAAGAGTATT--CTTCTTCGTAACG--TAGTCTTAGACTGCATTAAACAA-----SizeHit CountTotal NormTotal
No Reads
droFic1
ATTATATAG--ACACCGCTTAAATATA------TACG--TATA-----TAT-------GATAATG----CA--TACACA-TCGATTCGTATCAACGATTTGGTTTAATATAAAA--CTTGGC-----------------------------TTAAAACGTCGAAGTTGA---CTTAA--CACATTCATGATAAC---TCATCCGT------TTGGATTTGATTGG-------TCCATTTCTTACACAAATCTTATT--ATATT----GAA---------TTTTTCTGTTTTCATTTGCAGGCTTT--TAAATGGAGTGTTAAGGTTGTT--ATTCATCGTAACG--CAGTCCTAG-------------A-----SizeHit CountTotal NormTotal
No Reads
droKik1
ATTATATAG--ACACTGCTTAAATATA------TATATATAC--------------------------------------------------------------GAATATAAAACATTTCGT-----------------------------TTAAAACGTCCCAGTTGGTTCCTTAA----CCCTTGTAGGATC---TC-----------------TTTGATTAG-------TCCACTTCTTATAC----------------C----GAATA-------TCTTTCTCTTTTTTCTT------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
ATTATGTAG--ACATTGCTTAAATATA------TAAATATATA------ATGATAT--AATATTA----GA--AACGCA-TCGACTTCAATCACCGATTCGGTTGAATATAAAA--TATGGTTTAAAA-AACA--AAAAAAAAAA----A-AAGAAACGTCGCAGATAA---CTAAA----CATTCATGA-AAC---TCATCTTCTGAAACTTGTACTTCTTTTG----------------TCGATAAATTGT-----AAGTTAATATTCTC-------TTCCTTGTTTTTCATTTGCAGACATT--TGAGTGGAATATCCGCGGTATTCTTCTGTTTGCAGTT--TAATCTAAG-------------A-----SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................ATTCATGA-AAC---TCATCTTCTG.......................................................................................................................................................................2111.001100000
.............................................................................................................................................................................................A-AAC---TCATCTTCTGAAACTTG................................................................................................................................................................2111.001100000
......................................................................A--AACGCA-TCGACTTCAATCAC........................................................................................................................................................................................................................................................................................2111.001000010
.....................................................................................................................................................................................CATTCATGA-AAC---TCATCTTCT........................................................................................................................................................................2111.001100000
.............................................................................................................................AAA-AACA--AAAAAAAAAA----A-AAGAA..........................................................................................................................................................................................................................2370.141010000
.........................................................................................................................TTTAAAA-AACA--AAAAAAAA.......................................................................................................................................................................................................................................19130.081010000
...........................................................................................................................TAAAA-AACA--AAAAAAAAAA----.................................................................................................................................................................................................................................19200.051010000
.............................................................................................................................AAA-AACA--AAAAAAAAAA----A-AAGAAG.........................................................................................................................................................................................................................24200.051010000
droBip1
ATTATGTAG--ACATTGCTTAAATATA------TAAATATATAA----TGATATAATA------TTA--GAA--G-----------C-----------------GAATATAAAA--CATTGTTAAAAA----A--AGAGAAAAAA----A-AAGAAACGTCGCAGCTAA---CTAAA----CATTCATGA-AAC---TCATCCGT------TTGTACTTCTTTTG-------TCGGTAATTTGTA--------------AGTTAATATTCTCTTCCTTGTTT-TTTTTTTTCATTTGCAGACCTT--TGAGTGGAATATCAGTGGTATCCTTCTGTTTGCAGTT--TATTCCAAG-------------A-----SizeHit CountTotal NormTotal
No Reads
dp5
ATTATATAGAGACACTGCTTAAATATA------TATAC-TCTA-----AAT-------GATAATG----CT--TAAACAATTGCATCTGACTATCAATCCGGTTGAGCGTACCA-------------------------AA-------------------------CGA---C-----ATCCATTCATGGGAACGACTCATCC--------------------GGTCCGAGG--AATTTCTCAAAT----------------A----ATACG-------TTCTTTTCCTTTCGTTTACAGTGAAA--TAAATGGA-----------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ATTATATAGAGACACTGCTTAAATATA------TATAC-TCTA-----AAT-------GATAATG----CT--TACACAATTGCATCTGACTATCAATCCGGTTGAGCGTACCA-------------------------AA-------------------------CGA---C-----ATCCATTCATGGGAACGACTCATCC--------------------GGTCCGAGG--AATTTCTCAAATAATACCT------------------A-------TTCTTTTCCTTTCGTTTACAGTGAAA--TAAATGGA-----------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATTAAAAGG--AAACTCTTTAAACGTA------TATT---------------GAAAAT------ATT--TAT--T-----------ACTTTTAAAATTTTACTCTAAGAAAAAA-------------------------AAAAAAATA-A-TTAAAAATTTTAACTTGA---ATTCG----CGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTTATATA-------TGCTTAAATATACATATA------TATA-----TATATTAAAA-ATACTATATATG--TATAAA-CAAAATCGAATTAAACACTAGACTGCAGCCAAA--------T------TGAAAATGATAAAAAATTGAAATTTAAAAC------------------------------------------------------------------------------------------------------------------------------------------GCAGAACTG--CAATACAAAAATCGTAGGAA-----------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................................................................................CTAGACTGCAGCCAAA--------T------T.....................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................ACACTAGACTGCAGCCAAA--------T------......................................................................................................................................................................................................................................................2011.001000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................ATTTAAAAC------------------------------------------------------------------------------------------------------------------------------------------GCAGAACTG--CAATA..............................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................AAAATCGAATTAAACACTAGACT..............................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................A--------T------TGAAAATGATAAAAAATTGAAA................................................................................................................................................................................................................................2411.001000000000000000000000010000000000000000000000000000000000000000
.................................................................................................CTAGACTGCAGCCAAA--------T------TGA...................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................GAAAATGATAAAAAATTGAAAT...............................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................................................................................ATTTAAAAC------------------------------------------------------------------------------------------------------------------------------------------GCAGAACTG--CAATACAAA..........................................................2711.001000000000000000000100000000000000000000000000000000000000000000
............................................................................................................................................................AC------------------------------------------------------------------------------------------------------------------------------------------GCAGAACTG--CAATACAA...........................................................1911.001000000000000000000000000000000000000000000000000000000000000100
....................................................................................................GACTGCAGCCAAA--------T------TGAAAATG..............................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GCCAAA--------T------TGAAAATGATAA..........................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................TAAACACTAGACTGCAGCCAAA--------T------TGA...................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................AACACTAGACTGCAGCCAAA--------T------TG....................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................ATTAAACACTAGACTGCAGCC........................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................AACACTAGACTGCAGCCAAA--------T------......................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
....................................................................................ATCGAATTAAACACTAGACTGCAGCCA.......................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGAAAATGATAAAAAATTGAAAT...............................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................ATAAA-CAAAATCGAATTAAA.......................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................................................TTGAAATTTAAAAC------------------------------------------------------------------------------------------------------------------------------------------GCAGAAC.......................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................C------------------------------------------------------------------------------------------------------------------------------------------GCAGAACTG--CAATACAAA..........................................................1911.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................TG--CAATACAAAAATCGTAGGAA-----------------------------------------------2211.001001000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................CAGAACTG--CAATACAAAAATC......................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..................................................................ATATG--TATAAA-CAAAATCG..............................................................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................CTAGACTGCAGCCAAA--------T------TG....................................................................................................................................................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
TCTATATAT--ACACA-------TATATATAAA------TATAATTTAAGA-------AATATTTTG--CACTTACATA--------------TATACTTCGAGAA----------------------------------------------------------------------------------------------------------------------------------TTCTTAAGAT----------------A----AATCA-------ATTCTATATATAGATTTGTATGAATA--TTAATGAAAAAATAT----------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
A--------------------AATATATATACA------TATA-----TATCGTAAAT------ATC--GAA--T-----------AAAATGAAATATCGAATTTTATAT--TG--GCTGGT------TAGAAATGA---AGCAATGCAT-TGTGCATAG--------------------------------CC---AACTTCGG------TTCAGTTCAGTTAT-------TCAGTTGC---CACTGATCCTAATTCATGCA----AAATG-------GTTTTTTTTTTTCACTCAAGGAC-ACACACAGTTGGAGAT---AGAAATT--CTTTTGCGTA---------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 01:05 PM