ID:

dsi_9664

 Coordinate:

2r:8173295-8173521 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2r_8173522_8174033_-]; CDS [2r_8173522_8174033_-]; exon [2r_8172845_8173294_-]; CDS [2r_8172845_8173294_-]; intron [2r_8173295_8173521_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACCAGTACCAGTACCAGTCCTGTATCTCTAAGCATCCTCATTCCTCACATGTCACTGTCATAGATTACAAAAAAGAAAACACATTAATCCGCGTTGTCTTGTTGAGCGTTGATCGTTAACCTTTGAGAAACTGTGGCACTGTTCCTCTCTCTGTTCCCAACGCCAATCCCCAAACTGCGCAACATTTAGTAACTTCAAATCCTTTCCTTCTGCTATTTCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCG
**************************************************.((.((((........))))))....((((..((((.(((....(((.......)))....)))..)))).))))....................((((((.....((((.((((((......(((....(((((((.((...)).)))..))))...)))..)))))))))).....))).))).......(((((...................)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body
.............................................................................................................................................AATGTGCGTTGTCCTGTTGAG..................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0
.................................................................................CTCTAGGCATCCTCAATCGT.................................................................................................................................................................................................................................. 20 3 1 1.00 1 0 0 1 0 0 0
....................CAAGATGGACAACATTCC................................................................................................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................TTTCAGGTACTGGTCCGA...................................... 18 2 2 0.50 1 0 0 0 1 0 0
....................................................................................................................................................................................................................................................GTAGCTTCAAATCCT.................................................................... 15 1 8 0.13 1 0 0 0 1 0 0
........................................................................GTCCTGTAACTGTAAGC.............................................................................................................................................................................................................................................. 17 2 10 0.10 1 0 0 0 0 1 0
..............................................................................................................................................................TAAGCGTTGATTGTTCACC...................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 0 1
...................................................................................................................................................GGTTGTCTTGTTGAG..................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0
....................................................................................................................................................................................................................................................................................GGTACTGGTAAGACTGCG................................. 18 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GTGTGGATAACGAAGTTCGGGTTCTACCTGTTGTAAGGGCTACCGCTAACCACTCATGGTCATGGTCATGGTCAGGACATAGAGATTCGTAGGAGTAAGGAGTGTACAGTGACAGTATCTAATGTTTTTTCTTTTGTGTAATTAGGCGCAACAGAACAACTCGCAACTAGCAATTGGAAACTCTTTGACACCGTGACAAGGAGAGAGACAAGGGTTGCGGTTAGGGGTTTGACGCGTTGTAAATCATTGAAGTTTAGGAAAGGAAGACGATAAAGTCCATGACGATGCTCACGCACTTGTTCCGGTGGTTACTCGCGTTCACGTAGC
**************************************************.((.((((........))))))....((((..((((.(((....(((.......)))....)))..)))).))))....................((((((.....((((.((((((......(((....(((((((.((...)).)))..))))...)))..)))))))))).....))).))).......(((((...................)))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
......................................................................................................................................................................................................................................................................................................ACTTGTTCCGTTGATTACACG............ 21 3 3 0.33 1 0 1 0 0 0 0 0 0
....................................................................TCGTGAGGAGATAGAGATT................................................................................................................................................................................................................................................ 19 3 20 0.30 6 6 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CGATGAAGTCCATGACT........................................... 17 2 8 0.25 2 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................AGGAAGAGGATAAAGT................................................... 16 1 10 0.20 2 0 0 2 0 0 0 0 0
...................................................................................................................................................................................................................................................TCGTTGAGGTGTAGGAAAGG................................................................ 20 3 20 0.15 3 0 0 2 0 0 0 0 1
.......................................................ATGGTCATGGTCATGGT............................................................................................................................................................................................................................................................... 17 0 9 0.11 1 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................AGAGAGACAAGGCTT............................................................................................................... 15 1 10 0.10 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................ATACCATTGAAGTCTAGGAA................................................................... 20 3 11 0.09 1 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................TTTAGGAGAGGAGGACGTTA....................................................... 20 3 13 0.08 1 0 0 0 0 1 0 0 0
......................................................................GTGAGGAGATAGAGATT................................................................................................................................................................................................................................................ 17 2 13 0.08 1 1 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................CCCTCTTGTTCCGGTCGTTA................ 20 3 18 0.06 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................GCGTTGTAATTCATT............................................................................... 15 1 18 0.06 1 0 1 0 0 0 0 0 0
..............................................................................................CTAAGGACTGTACAGT......................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................ACACAGTCACAAGAAGAGA......................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0
.................................................................................GAGATTCGTAGGCGTC...................................................................................................................................................................................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................TGGTTCCTCGCGTTC....... 15 1 20 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................................................AGGAAGACGTTAAAG.................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:8173245-8173571 - dsi_9664 CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------------GTACCAGTCCTG---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAG----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTCTCT----------------------------GT-----------------------------------TCCC----------------------------------------AACGCCAATCCCCAAACT-----GC---GCAACA---TT-------------------------------------------------------------------------------------------------TAGTAACTTCAAAT-C--CTT--TC-----C--TTCTGCTATTTCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCG
droSec2 scaffold_1:5019699-5020025 - CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------------GTACCAGTCCTG---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTCTCT----------------------------GT-----------------------------------TCCC----------------------------------------AACGCCAATCCCTAAACT-----GC---TCAACA---TT-------------------------------------------------------------------------------------------------TAGTAACTTCAAAT-C--CTC--TC-----C--TTCTGCTATTTCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCG
dm3 chr2R:7468854-7469182 - CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------------GTACCAGTCCTG---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTCT--------------------------CTCTGT-----------------------------------TCCC----------------------------------------AACGCCAATCCCTAAACT-----GC---TCAACA---TT-------------------------------------------------------------------------------------------------TAGTAACTTCAAAT-C--CTT--TC-----C--TTCTGCTATTTCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCG
droEre2 scaffold_4845:18327100-18327457 + CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCAAGTACCAAGTACCAGTACCAGTCCTC---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTAT--------------CTCTCTCTCTCTCTTTGT-----------------------------------TCCC----------------------------------------AACGACAATCCCTGATCT-----GG---TGAACATTATT-------------------------------------------------------------------------------------------------TAGTAACCTGAAAA-C--CCT--TC-----C--TTCTGCTATTTCAGGTACTGCTACGAGTGCGTGAACAAGGCGACCAATGAGCGCAAGTGCATCG
droYak3 2R:9486149-9486495 + CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------GAACAAGTACCAGTCCTT---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTCT--------------CCCTTTCTCTCTCTCTGT-----------------------------------ACCC----------------------------------------AACTACAATCCCTAATCT-----GT---TGAACT---TT-------------------------------------------------------------------------------------------------TAGTAACTTTATAA-A--CTT--TC-----C--CTCTGCTATTCCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCG
droEug1 scf7180000409462:1029501-1029861 + CACACCTACTGCTTCAAACCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACA----TG---------------------------------CTGTACCA-------------------AGTCCTACTCTAAT------------------------------------------CTC--T----AAATAAA-----------------------------------------------------------------------AAA----------------------CATC----------------CTCATTACCT---------------CACATGTCAC-TGTCAT-AGATTACAA----AAGATCTC---------AAAA---------------------------------GAAA--------AGAACACATTAA--------TC----------------------------------CGCGTTGTCTTGTTAAG-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTACTCT--CT----------------------------GT-----------------------------------CCCT---TAA--------------AATAGAACTAAACCC-------CGCC-------------------------------------------------------CCTAGTTAGAATCTTCA------ATAAACTAACCCCTATTCTTCTATA---------------------------------------------------T-----C--TT--CTTATTTTAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAACGCAAGTGCATCG
droBia1 scf7180000302292:238437-238783 - CACACCTACTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------TGG------------------GAACCACTCCTC---T-ATCTCTC--TCTCT------------------------------CTC--T----------------------------------------------------------------------------------ATA----------------------CATC------C----C----CTCATG-CCT---------------CACAAGTCAC-TGTCAT-GGATTACAAAATTAAG--------------A------------ATTAA-----------------GAGAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAT-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-A--CT--------GT----------------------------GGCACT-TT-ACTCT--CT----------------------------GT-----------------------------------TCCCCCAAAAACCGAAA------------------------------------CCCTGAA-T-----GT--------------AACTACT---------------CCTAGA---------------------------------------------------------------------TACTAACTTG-----G--CTT--AC-----C--TTCTGTCCTTTCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCG
droTak1 scf7180000415991:765475-765811 - CACACCTACTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------TGT------------------GTACCAGTCCTC---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------GTA----------------------CATC----------------CTCCAT-CCT---------------CACAAGTCAC-TGTCAT-AGATTACAA-GTTAAG--------------AAAA---------------------------------GAAA--------GAAACACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAT-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTACTCT--CT----------------------------GTTCCCTC-----------------------------CCCC---AAAA-CGAAA-------------------C----------------CCCCGA--T-----GA--A-----------GAAGATC---------------CCCAGT---------------------------------------------------------------------TGCTAATCTCAGAT-C--CCC-------------TCTATCCTTTCAGGTATTGCTACGAATGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCG
droEle1 scf7180000491214:2930486-2930870 - CACACCTACTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------GTACCAGTACCAGTCCCC---------------------------CTA----------TCGATCTATCTC--T----AC----------------------------------------------------------------------------ATA----------------------CATC------C---TC----CTCATT-CCT---------------CACATGTCACATGTCATCAGACTCTAA---------------------AAAA---------------------------------TAAA-------AAACACACATTAA--------TC----------------------------------CGCGTTGTCTTGTTAAG-CGTTAA-------T---------------CGTTGATCGTTAACCG---TTGAGAA-AAACT--------GT----------------------------GGCACT-GTTACTCT--CTGTCCCTCTCTGTCCCTCTCTGTCCCTCTGT-----------------------------------TCCC-------------------------------------------GCC-------------------------------------------------------TCTAGATACAATCTTCAAT--------------------------------------------------------TGGTTTATTCAAAT-C--TTTTTT----TTGCCTA--CTTTTTGCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCG
droRho1 scf7180000779263:76089-76423 + CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------TGTAC--------------------CAGTCCCC-TCA-AT------------------------------------------CTCTCT----------------------------------------------------------------------------------ATA----------------------CATC----------------CTCATT-CCT---------------CACATGTCACATGTCAT-AGACTCTAA---------------------AAAG---------------------------------AAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTAAG-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-AAACT--------GT----------------------------GGCACT-GTTACTCT--CT----------------------------GT-----------------------------------TCCC---AAAA-CGATAACCTGAAAATTGAACTCTACCT----------------------T-----GG---TCTACA---AT------------------------T------------------GGTTAATCTTCCAC------------AT--------------------------------------------------------C--TC--CTCTTTGCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCG
droFic1 scf7180000453773:399396-399715 - CACACCTACTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTAGC----TAT--------------------------------CTGTAGCG--------------ATACCACTCCTC---T-AT----ATAT--CT------------------------------CTC--T----AA----------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCA----------------------------------------------------------------------------------------------CATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-A--CT--------GT----------------------------GGCACT-CTTACTCTCTCT----------------------------GT-----------------------------------TTCC---CCAA-CAAAAACTTG------------------------------------------AAAT----------------------TAATTTTAACAAATA-----------------TT--------------------------------------------------------TAATAATTTTAA-TATATATT--TT-----A---TCTTATTTTTTAGGTATTGCTACGAGTGCGTGAACAAGGCGACGAATGAACGCAAGTGCATCG
droKik1 scf7180000302386:419179-419491 + CACACGTATTGCTTCAAGCCCAAGATGGACAACATACCCGATGGCGATTGGTGAGTATA-----------------------------------------------------------------------------------------------------------------TCGATCTATCTA--TCCTCCC----------------------------------------------------------------------------ACT----------------------CCTC------C---TGCTCAGTCATC-CCT---------------CAC---------------------------------------------------------------------------------------------------ACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGTTTT-------T-----------TGATCGTTGATCGTTAACCGTCGTTGAGAATA--CTG----TGTGT----------------------------GGCACT-CTCTCTCT------------------------CTCTCTCTGT-----------------------------------TCCT---TAA-------------------ATCCCTGCTC-TTTTAA-----A----TACTCTGG---A---A-----------AAGGTT---------------------------------------GTAATC------------------------------------------------------TCTG------------------G-----TTTCCTTCCAGGTACTGCTACGAGTGCGTCAACAAGGCCACCAATGAGCGCAAGTGCATCG
droAna3 scaffold_13266:1183341-1183691 - CACACCTACTGCTTTAAGCCCAAGATGGACAACATTCCGGATGGCGATTGGTGAGTATCCCACTC---------------------------------CTGG------------------TTACCAAT-------T-AT------------------------------------------ATC--------------------------------------------------------------------------------------AACACTTCTCCTTCTCCTCCTCCTCATCCTCATCCTCCTCCTC-GTCATC-CCT---------------CACCGGCCAT-C----T-ACATT---------------------------------------------------------------------CAAAA-------ATTAATCCTTTAATCCATCCAT----------------------------CCGTTGTCTTGTTGAG-CGTTTT-------T-----------T-----TTAATCGTAAAC---------------------------T----------------------------GGCACTTGTTCTT----CT----------------------------GT-----------------------------------TCCC---AAAA-CTAT----------------------------------AATCCC--ATCTGGAAAA--------T------AATGATT---------------CCTA-------------------------------------------------------------------------ATCAT-TGAAAT-T--G-----------ATAT--TATCTTTCCAGGTACTGTTATGAGTGCGTGAACAAGGCCACCAATGAGAGGAAGTGCATCG
droBip1 scf7180000396730:2177635-2177973 - CACACCTACTGCTTTAAGCCCAAGATGGACAACATTCCGGACGGCGATTGGTGAGTAGC----------------------------------------C-------------------------AGCCACT---------------------------CTTTTGGTAT------------TTA--T----------------------------------------------------------------------------------ACT----------------------CATC------C---TCCTCGTCCATC-CCT---------------CACCGAC----CATCAT-CTCTCACA----------------------------------------------------------------TTCAAA--------ATTAATCCGTTAATCCACCCAT------------------------TAACGCGTTGTCTTGTTGAG-CGTTTT-------T------------------TGATCGTAAAC---------------------------T----------------------------GGCACCTGTTTTCCT--------------------------------CC-----------------------------------TCCC---AGAA-CTATA-------------------CTCTTCCCAAGGTCCCTCCCCGA-CT-----GTAA-TCCACT---TT-------------------------------------------------------------------------------------------------GATTAACCCAAAA--C--G-----------ATGT--TATATTTCCAGGTACTGTTATGAGTGCGTGAACAAGGCCACCAACGAGAGGAAGTGCATCG
dp5 3:4655945-4656349 - CATACGTACTGCTTCAAGCCCAAAATGGACAACATACCCGATGGCGACTGGTGAGTACT------------------------------------------------------------------------C---T-CT----C--T--CT------------------------------CTC--T----CAACGCC-----------------------------------------------------------------------CTG----------------------CATC----------------CCCATT-TCCATC------TCCATTTCC-------ATTCC-----ACCACAC---------------------ACAACGTTGCCTCATTCT-----------------GTGCACACACAAAAATCAT--------------------CCATGGATGTCCTT---CTTGTCCTTTGTGTCGCGTTGT-TTGTTGAA-CGTTTA-------T-----------------GTGACCGTTAACCG---TTGAGAC-ACTCTGTTGTTGCGT----------------------------GGCACT-GTT-------------------------------------GTTCCCACACCCACTCCCACTCCACCTCCACCTCCTA------------------------------------CTC-TCTCAA----------------GGCA-A---A-----------AAGGATC---------------CCC-------------C----GAGTAATCCTCCCC------------CTCTCGCTCTCG-------------------------------------------TCTG-----TCTCCTTCCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAATGCATCG
droPer2 scaffold_2:4844295-4844707 - CATACGTACTGCTTCAAGCCCAAAATGGACAACATACCCGATGGCGACTGGTGAGTACT------------------------------------------------------------------------C---T-CT----CTCT--CT------------------------------CTC--T----CAACGCC-----------------------------------------------------------------------CTG----------------------CATC----------------CCCATT-TCCATCTCCATCTCCATTTCC-------ATTCC-----ACCACAC---------------------ACAACGTTGCCTCATTCT-----------------GTGCACACACAAAAATCAT--------------------CCATGGATGTCCTT---CTTGTCCTTTGTGTCGCGTTGT-TTGTTGAA-CGTTTA-------T-----------------GTGACCGTTAACCG---TTGAGAC-ACTCTGTTGTTGCGT----------------------------GGCACT-GTT-------------------------------------GTTCCCACACCCACTCCCACTCCACCTCCACCTCCTA------------------------------------CTC-TCTCAA----------------GGCA-A---A-----------AAGGATC---------------CCC-------------A----GAGTAATCCTTCCC------------CTCTCGCTCTCG-------------------------------------------TCTG-----TCTCCCTCCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAATGCATCG
droWil2 scf2_1100000004558:1895100-1895469 + CACACATACTGCTTCAAGCCCAAAATGGATAACATACCCGATGGCGATTGGTAAGTATC----------------------------------------ATTCCAA--------AAAGAAA---GGGTGC--------------------------------------------------------------AATGA-TTTCCCCCTTTATATACCTATACATACCTTAATATCCTTTACCCATTACCCGATGCGTCGATATCGTCAAT--------------------------------------------------------------------------------------------------------TTTTCTGCACACATTCAACGTGGCGTCATTGTCATCATCT--------------------------------------------------GTCGTCGTCCTCATCATTATAATT-------------------------------------------------------------------------------A--TT--------GT----------------------------TGTTTT-TTTTTTTTTT--------------------------CTTTCT-----------------------------------TATT----------------------------------------AATGGCAC-CCTTGT-------------CG----------------TCCTTTTAATAATAA-----------------AT--------------------------------------------------------TGATGTAAATAA-ATTGTATT--TT-----A--TTTGAATTTTTCAGGTACTGCTATGAATGTGTCAATAAGGCCACCAATGAGCGCAAGTGCATCG
droVir3 scaffold_12875:12980264-12980619 + dvi_6605 CACACCTACTGCTTCAAGCCCAAAATGGACAACATACCCGATGGCGACTGGTGAGTAGA----AAGCAAACCCAACCC--AACCAA----------------ACCA--------AACCAAGCCAAA-TT--C---T-TC----A--T--CCGACTCAGCCCTTTGGTCCTCATCA------------------------------------------------------------------------------------------------A----------------------TCTG----------------TTCATC-CCT---------------CGCAC---------------------------------------------------------------------------------------------------ATTTG-------------------------------------------TCGCATCGTCTTGA---ATTGTTTACTTTCGTT------------------TTATTGTACGC---------------------------TCGCGTCCAAGTCCACCAAGTCCACGCCACGCACT-GTACCGCGTCCC----------------------------GC-----------------------------------TCCC---CAA--------------------------------------------------------------------------------------------------------------------------TCGCCCTG------------GTCTCTGTCCTGTTTGTGCGCAACTAATG---------A--------GA--TC-----C--TT--CTGCTTGCAGGTACTGCTATGAGTGCGTCAATAAGGCGACCAACGAGCGCAAGTGCATCG
droMoj3 scaffold_6496:20246763-20246828 + TTCTCCTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGGTATTGCTACGAGTGCGTCAACAAGGCGACCAACGAGCGCAAGTGCATCG
droGri2 scaffold_15245:7384498-7384884 - CACACCTACTGCTTCAAGCCCAAAATGGACAACATACCCGATGGCGATTGGTGAGTTCA----ATTCAATATTAATCTTTAACTGAATCCATTACTTC-A-CTCCA--------CTCCATGTCCAA--------------------------------------------------------------------TGTC-----------------------------------------------------------------------CTT----------------------TATC----------------AACAT--------------------------------------------------------CTCTGCTCA--T-----------CCACTCTCATCATCTCTCTCTCTCTCGCACA-----------CATAT----------------------------------------TTTTTGTCGTGTTTT--------------------CGTTTTCTTGTATCT----TGTTTTTC--------------------------------------------------------TTGCCATGCACT-GTGCCCTGCC---------------------------------------------CCCCGCCCACCTCG--------ACCC-----------------------AGATCCCTGCCC-----------------CACCCC-----GC---TCTAGG---T--------TCCTTCTGTGTATAT-----------------ATTT------------------------------------------------------ATGTGTCAACTA-ATTGTGGC--TTCTTGTG-----GCTGCTTTCAGGTACTGCTACGAGTGCGTCAACAAGGCGACCAATGAGCGCAAGTGCATCG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------------GTACCAGTCCTG---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAG----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTCTCT----------------------------GT-----------------------------------TCCC----------------------------------------AACGCCAATCCCCAAACT-----GC---GCAACA---TT-------------------------------------------------------------------------------------------------TAGTAACTTCAAAT-C--CTT--TC-----C--TTCTGCTATTTCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................CAAGATGGACAACATTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
droSec2
CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------------GTACCAGTCCTG---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTCTCT----------------------------GT-----------------------------------TCCC----------------------------------------AACGCCAATCCCTAAACT-----GC---TCAACA---TT-------------------------------------------------------------------------------------------------TAGTAACTTCAAAT-C--CTC--TC-----C--TTCTGCTATTTCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCACCAATGAGCGCAAGTGC....2411.0010100
..............................AACATTCCCGATGGCGATT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------------GTACCAGTCCTG---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTCT--------------------------CTCTGT-----------------------------------TCCC----------------------------------------AACGCCAATCCCTAAACT-----GC---TCAACA---TT-------------------------------------------------------------------------------------------------TAGTAACTTCAAAT-C--CTT--TC-----C--TTCTGCTATTTCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTGAACAAGGCCACCAATGAGCG...........2617.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACCAATGAGCGCAAGTGCATC.2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT-----GC---TCAACA---TT-------------------------------------------------------------------------------------------------TAGTAACT.........................................................................................2013.0030000000000000000000000000000000000000000000000000000000002100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................CATTCCCGATGGCGATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAGTGCGTGAACAAGGC.......................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGAGTGCGTGAACAAGGCCA.....................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCTACGAGTGCGT................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................T---------------CACATGTCAC-TGTCAT-AGATT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................AGATGGACAACATTCCCGATGGCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCCACCAATGAGCGC..........2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGCGTGAACAAGGC.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................AGCCCAAGATGGACAACATT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGAACAAGGCCACCAATGAGCGC..........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CACACCTATTGCTTCAAGCCCAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................CAACATTCCCGATGGCGATTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGCTACGAGTGCGTGAACAAGGC.......................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCCACCAATGAGCGCAAGTGC....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCACCAATGAGCGCAAGTG.....2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................CCCGATGGCGATTGGTGAGTACC----------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCCACCAATGAGC............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCAATGAGCGCAAGT......1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGCCACCAATGAGCGCA.........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTACGAGTGCGTGAACA...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.........TGCTTCAAGCCCAAGATGGACAACAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCCAAGATGGACAACATTCCCGATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................CCTG---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAA----------------------CATC----------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................AAGATGGACAACATTCCCGATGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGTGCGTGAACAAGGCCACCA..................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCCACCAATGAGCGCAAGTG.....2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
.......ATTGCTTCAAGCCCAAGATGGAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCACCAATGAGCGCA.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-C--CTT--TC-----C--TTCTGCTATTTC....................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................CAAGATGGACAACATTCCCGATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTACGAGTGCGTGA..............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTGCGTGAACAAGGCCACC...................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.......................GATGGACAACATTCCCGATGGCGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGAGTGCGTGAACAAGGCC......................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGAGTGCGTGAACAAGGC.......................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................CAAGATGGACAACATTCCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTCTTGTTGAG-CGT-----------------------------TGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................GATGGACAACATTCCCGATGGCGATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............TCAAGCCCAAGATGGACAACATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCAATGAGCGCAAGTGCATC.2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............CAAGCCCAAGATGGACAACATTCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......TATTGCTTCAAGCCCAAGATGGACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................ACATTCCCGATGGCGATTGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
..................................TTCCCGATGGCGATTGGTACT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCAAGTACCAAGTACCAGTACCAGTCCTC---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTAT--------------CTCTCTCTCTCTCTTTGT-----------------------------------TCCC----------------------------------------AACGACAATCCCTGATCT-----GG---TGAACATTATT-------------------------------------------------------------------------------------------------TAGTAACCTGAAAA-C--CCT--TC-----C--TTCTGCTATTTCAGGTACTGCTACGAGTGCGTGAACAAGGCGACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCAATGAGCGCAAGT......1811.0011000000
droYak3
CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------GAACAAGTACCAGTCCTT---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCAC-TGTCAT-AGATTACAA---------------------AAAA---------------------------------GAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCT---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTCCTCTCT--------------CCCTTTCTCTCTCTCTGT-----------------------------------ACCC----------------------------------------AACTACAATCCCTAATCT-----GT---TGAACT---TT-------------------------------------------------------------------------------------------------TAGTAACTTTATAA-A--CTT--TC-----C--CTCTGCTATTCCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTGCTACGAGTGCGT................................1912.00200000020000
................................CATTCCCGATGGCGATTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAACAAGGCCACCAATGAGC............2211.00101000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACTGCTACGAGTGCGTGAACAAGGC.......................2811.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGGCCACCAATGAGCGCAAGTGCATC.2811.00100000010000
droEug1
CACACCTACTGCTTCAAACCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACA----TG---------------------------------CTGTACCA-------------------AGTCCTACTCTAAT------------------------------------------CTC--T----AAATAAA-----------------------------------------------------------------------AAA----------------------CATC----------------CTCATTACCT---------------CACATGTCAC-TGTCAT-AGATTACAA----AAGATCTC---------AAAA---------------------------------GAAA--------AGAACACATTAA--------TC----------------------------------CGCGTTGTCTTGTTAAG-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTACTCT--CT----------------------------GT-----------------------------------CCCT---TAA--------------AATAGAACTAAACCC-------CGCC-------------------------------------------------------CCTAGTTAGAATCTTCA------ATAAACTAACCCCTATTCTTCTATA---------------------------------------------------T-----C--TT--CTTATTTTAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAACGCAAGTGCATCGSizeHit CountTotal NormTotal
No Reads
droBia1
CACACCTACTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------TGG------------------GAACCACTCCTC---T-ATCTCTC--TCTCT------------------------------CTC--T----------------------------------------------------------------------------------ATA----------------------CATC------C----C----CTCATG-CCT---------------CACAAGTCAC-TGTCAT-GGATTACAAAATTAAG--------------A------------ATTAA-----------------GAGAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAT-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-A--CT--------GT----------------------------GGCACT-TT-ACTCT--CT----------------------------GT-----------------------------------TCCCCCAAAAACCGAAA------------------------------------CCCTGAA-T-----GT--------------AACTACT---------------CCTAGA---------------------------------------------------------------------TACTAACTTG-----G--CTT--AC-----C--TTCTGTCCTTTCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotal
No Reads
droTak1
CACACCTACTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------TGT------------------GTACCAGTCCTC---T-AT------------------------------------------CTC--T----------------------------------------------------------------------------------GTA----------------------CATC----------------CTCCAT-CCT---------------CACAAGTCAC-TGTCAT-AGATTACAA-GTTAAG--------------AAAA---------------------------------GAAA--------GAAACACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAT-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-A--CT--------GT----------------------------GGCACT-GTTACTCT--CT----------------------------GTTCCCTC-----------------------------CCCC---AAAA-CGAAA-------------------C----------------CCCCGA--T-----GA--A-----------GAAGATC---------------CCCAGT---------------------------------------------------------------------TGCTAATCTCAGAT-C--CCC-------------TCTATCCTTTCAGGTATTGCTACGAATGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotal
No Reads
droEle1
CACACCTACTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------AGTACCA--------GTACCAGTACCAGTCCCC---------------------------CTA----------TCGATCTATCTC--T----AC----------------------------------------------------------------------------ATA----------------------CATC------C---TC----CTCATT-CCT---------------CACATGTCACATGTCATCAGACTCTAA---------------------AAAA---------------------------------TAAA-------AAACACACATTAA--------TC----------------------------------CGCGTTGTCTTGTTAAG-CGTTAA-------T---------------CGTTGATCGTTAACCG---TTGAGAA-AAACT--------GT----------------------------GGCACT-GTTACTCT--CTGTCCCTCTCTGTCCCTCTCTGTCCCTCTGT-----------------------------------TCCC-------------------------------------------GCC-------------------------------------------------------TCTAGATACAATCTTCAAT--------------------------------------------------------TGGTTTATTCAAAT-C--TTTTTT----TTGCCTA--CTTTTTGCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotal
No Reads
droRho1
CACACCTATTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTACC----------------------------------------TGTAC--------------------CAGTCCCC-TCA-AT------------------------------------------CTCTCT----------------------------------------------------------------------------------ATA----------------------CATC----------------CTCATT-CCT---------------CACATGTCACATGTCAT-AGACTCTAA---------------------AAAG---------------------------------AAAAA-----------CACATTAA--------TC----------------------------------CGCGTTGTCTTGTTAAG-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-AAACT--------GT----------------------------GGCACT-GTTACTCT--CT----------------------------GT-----------------------------------TCCC---AAAA-CGATAACCTGAAAATTGAACTCTACCT----------------------T-----GG---TCTACA---AT------------------------T------------------GGTTAATCTTCCAC------------AT--------------------------------------------------------C--TC--CTCTTTGCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotal
No Reads
droFic1
CACACCTACTGCTTCAAGCCCAAGATGGACAACATTCCCGATGGCGATTGGTGAGTAGC----TAT--------------------------------CTGTAGCG--------------ATACCACTCCTC---T-AT----ATAT--CT------------------------------CTC--T----AA----------------------------------------------------------------------------AAA----------------------CATC----------------CTCATT-CCT---------------CACATGTCA----------------------------------------------------------------------------------------------CATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGT-----------------------------TGATCGTTAACCG---TTGAGAA-A--CT--------GT----------------------------GGCACT-CTTACTCTCTCT----------------------------GT-----------------------------------TTCC---CCAA-CAAAAACTTG------------------------------------------AAAT----------------------TAATTTTAACAAATA-----------------TT--------------------------------------------------------TAATAATTTTAA-TATATATT--TT-----A---TCTTATTTTTTAGGTATTGCTACGAGTGCGTGAACAAGGCGACGAATGAACGCAAGTGCATCGSizeHit CountTotal NormTotal
No Reads
droKik1
CACACGTATTGCTTCAAGCCCAAGATGGACAACATACCCGATGGCGATTGGTGAGTATA-----------------------------------------------------------------------------------------------------------------TCGATCTATCTA--TCCTCCC----------------------------------------------------------------------------ACT----------------------CCTC------C---TGCTCAGTCATC-CCT---------------CAC---------------------------------------------------------------------------------------------------ACATTAA--------TC----------------------------------CGCGTTGTCTTGTTGAG-CGTTTT-------T-----------TGATCGTTGATCGTTAACCGTCGTTGAGAATA--CTG----TGTGT----------------------------GGCACT-CTCTCTCT------------------------CTCTCTCTGT-----------------------------------TCCT---TAA-------------------ATCCCTGCTC-TTTTAA-----A----TACTCTGG---A---A-----------AAGGTT---------------------------------------GTAATC------------------------------------------------------TCTG------------------G-----TTTCCTTCCAGGTACTGCTACGAGTGCGTCAACAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotal
No Reads
droAna3
CACACCTACTGCTTTAAGCCCAAGATGGACAACATTCCGGATGGCGATTGGTGAGTATCCCACTC---------------------------------CTGG------------------TTACCAAT-------T-AT------------------------------------------ATC--------------------------------------------------------------------------------------AACACTTCTCCTTCTCCTCCTCCTCATCCTCATCCTCCTCCTC-GTCATC-CCT---------------CACCGGCCAT-C----T-ACATT---------------------------------------------------------------------CAAAA-------ATTAATCCTTTAATCCATCCAT----------------------------CCGTTGTCTTGTTGAG-CGTTTT-------T-----------T-----TTAATCGTAAAC---------------------------T----------------------------GGCACTTGTTCTT----CT----------------------------GT-----------------------------------TCCC---AAAA-CTAT----------------------------------AATCCC--ATCTGGAAAA--------T------AATGATT---------------CCTA-------------------------------------------------------------------------ATCAT-TGAAAT-T--G-----------ATAT--TATCTTTCCAGGTACTGTTATGAGTGCGTGAACAAGGCCACCAATGAGAGGAAGTGCATCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................GACAACATTCCGGATGGCGATTGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
droBip1
CACACCTACTGCTTTAAGCCCAAGATGGACAACATTCCGGACGGCGATTGGTGAGTAGC----------------------------------------C-------------------------AGCCACT---------------------------CTTTTGGTAT------------TTA--T----------------------------------------------------------------------------------ACT----------------------CATC------C---TCCTCGTCCATC-CCT---------------CACCGAC----CATCAT-CTCTCACA----------------------------------------------------------------TTCAAA--------ATTAATCCGTTAATCCACCCAT------------------------TAACGCGTTGTCTTGTTGAG-CGTTTT-------T------------------TGATCGTAAAC---------------------------T----------------------------GGCACCTGTTTTCCT--------------------------------CC-----------------------------------TCCC---AGAA-CTATA-------------------CTCTTCCCAAGGTCCCTCCCCGA-CT-----GTAA-TCCACT---TT-------------------------------------------------------------------------------------------------GATTAACCCAAAA--C--G-----------ATGT--TATATTTCCAGGTACTGTTATGAGTGCGTGAACAAGGCCACCAACGAGAGGAAGTGCATCGSizeHit CountTotal NormTotal
No Reads
dp5
CATACGTACTGCTTCAAGCCCAAAATGGACAACATACCCGATGGCGACTGGTGAGTACT------------------------------------------------------------------------C---T-CT----C--T--CT------------------------------CTC--T----CAACGCC-----------------------------------------------------------------------CTG----------------------CATC----------------CCCATT-TCCATC------TCCATTTCC-------ATTCC-----ACCACAC---------------------ACAACGTTGCCTCATTCT-----------------GTGCACACACAAAAATCAT--------------------CCATGGATGTCCTT---CTTGTCCTTTGTGTCGCGTTGT-TTGTTGAA-CGTTTA-------T-----------------GTGACCGTTAACCG---TTGAGAC-ACTCTGTTGTTGCGT----------------------------GGCACT-GTT-------------------------------------GTTCCCACACCCACTCCCACTCCACCTCCACCTCCTA------------------------------------CTC-TCTCAA----------------GGCA-A---A-----------AAGGATC---------------CCC-------------C----GAGTAATCCTCCCC------------CTCTCGCTCTCG-------------------------------------------TCTG-----TCTCCTTCCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAATGCATCGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..........................GGACAACATACCCGATGGCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGCTCTCG-------------------------------------------TCTG-----TCTCCTTCCA...................................................2511.0010100000000
..........................GGACAACATACCCGATGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGAGTGCGTGAACAAGGCCACCA..................2611.0010000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTACGAGTGCGTGAACAAGGCCACC...................2611.0010000001000
droPer2
CATACGTACTGCTTCAAGCCCAAAATGGACAACATACCCGATGGCGACTGGTGAGTACT------------------------------------------------------------------------C---T-CT----CTCT--CT------------------------------CTC--T----CAACGCC-----------------------------------------------------------------------CTG----------------------CATC----------------CCCATT-TCCATCTCCATCTCCATTTCC-------ATTCC-----ACCACAC---------------------ACAACGTTGCCTCATTCT-----------------GTGCACACACAAAAATCAT--------------------CCATGGATGTCCTT---CTTGTCCTTTGTGTCGCGTTGT-TTGTTGAA-CGTTTA-------T-----------------GTGACCGTTAACCG---TTGAGAC-ACTCTGTTGTTGCGT----------------------------GGCACT-GTT-------------------------------------GTTCCCACACCCACTCCCACTCCACCTCCACCTCCTA------------------------------------CTC-TCTCAA----------------GGCA-A---A-----------AAGGATC---------------CCC-------------A----GAGTAATCCTTCCC------------CTCTCGCTCTCG-------------------------------------------TCTG-----TCTCCCTCCAGGTACTGCTACGAGTGCGTGAACAAGGCCACCAATGAGCGCAAATGCATCGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.ATACGTACTGCTTCAAGCCCAAAATG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGTGCGTGAACAAGGC.......................1911.001000001
droWil2
CACACATACTGCTTCAAGCCCAAAATGGATAACATACCCGATGGCGATTGGTAAGTATC----------------------------------------ATTCCAA--------AAAGAAA---GGGTGC--------------------------------------------------------------AATGA-TTTCCCCCTTTATATACCTATACATACCTTAATATCCTTTACCCATTACCCGATGCGTCGATATCGTCAAT--------------------------------------------------------------------------------------------------------TTTTCTGCACACATTCAACGTGGCGTCATTGTCATCATCT--------------------------------------------------GTCGTCGTCCTCATCATTATAATT-------------------------------------------------------------------------------A--TT--------GT----------------------------TGTTTT-TTTTTTTTTT--------------------------CTTTCT-----------------------------------TATT----------------------------------------AATGGCAC-CCTTGT-------------CG----------------TCCTTTTAATAATAA-----------------AT--------------------------------------------------------TGATGTAAATAA-ATTGTATT--TT-----A--TTTGAATTTTTCAGGTACTGCTATGAATGTGTCAATAAGGCCACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................ATCATCT--------------------------------------------------GTCGTCGTCCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCCACCAATGAGCGCA.........1911.00100010
........................................................ATC----------------------------------------ATTCCAA--------AAAGAAA---GGGTGC--------------------------------------------------------------AAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
droVir3
CACACCTACTGCTTCAAGCCCAAAATGGACAACATACCCGATGGCGACTGGTGAGTAGA----AAGCAAACCCAACCC--AACCAA----------------ACCA--------AACCAAGCCAAA-TT--C---T-TC----A--T--CCGACTCAGCCCTTTGGTCCTCATCA------------------------------------------------------------------------------------------------A----------------------TCTG----------------TTCATC-CCT---------------CGCAC---------------------------------------------------------------------------------------------------ATTTG-------------------------------------------TCGCATCGTCTTGA---ATTGTTTACTTTCGTT------------------TTATTGTACGC---------------------------TCGCGTCCAAGTCCACCAAGTCCACGCCACGCACT-GTACCGCGTCCC----------------------------GC-----------------------------------TCCC---CAA--------------------------------------------------------------------------------------------------------------------------TCGCCCTG------------GTCTCTGTCCTGTTTGTGCGCAACTAATG---------A--------GA--TC-----C--TT--CTGCTTGCAGGTACTGCTATGAGTGCGTCAATAAGGCGACCAACGAGCGCAAGTGCATCGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTATGAGTGCGTCAATAA..........................1911.001000000000000000000000000000000000000010000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTATGAGTGCGTCAATAAGGCGACC...................2811.001000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCAACGAGCGCAAGTGCATC.2211.001001000000000000000000000000000000000000000000000000000000000000
......................AAATGGACAACATACCCGAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000100000000000000000000000000
droMoj3
TTCTCCTGC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACAGGTATTGCTACGAGTGCGTCAACAAGGCGACCAACGAGCGCAAGTGCATCGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGGCGACCAACGAGCG...........2011.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTACGAGTGCGTCAACAAGGC.......................2511.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGCGTCAACAAGGC.......................1811.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCTACGAGTGCGTCAACAAGG........................2411.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACAAGGCGACCAACGAGCGC..........2311.001001000
droGri2
CACACCTACTGCTTCAAGCCCAAAATGGACAACATACCCGATGGCGATTGGTGAGTTCA----ATTCAATATTAATCTTTAACTGAATCCATTACTTC-A-CTCCA--------CTCCATGTCCAA--------------------------------------------------------------------TGTC-----------------------------------------------------------------------CTT----------------------TATC----------------AACAT--------------------------------------------------------CTCTGCTCA--T-----------CCACTCTCATCATCTCTCTCTCTCTCGCACA-----------CATAT----------------------------------------TTTTTGTCGTGTTTT--------------------CGTTTTCTTGTATCT----TGTTTTTC--------------------------------------------------------TTGCCATGCACT-GTGCCCTGCC---------------------------------------------CCCCGCCCACCTCG--------ACCC-----------------------AGATCCCTGCCC-----------------CACCCC-----GC---TCTAGG---T--------TCCTTCTGTGTATAT-----------------ATTT------------------------------------------------------ATGTGTCAACTA-ATTGTGGC--TTCTTGTG-----GCTGCTTTCAGGTACTGCTACGAGTGCGTCAACAAGGCGACCAATGAGCGCAAGTGCATCGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTGCCCTGCC---------------------------------------------CCCCGCC....................................................................................................................................................................................................................................................................................................1820.50110

Generated: 05/19/2015 at 04:42 AM