ID:

dsi_9611

 Coordinate:

3r:17125578-17125651 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.7 -16.6 -15.9 -15.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTTCGACACGCTCGATGTGGTCACGTACGAGGAGGTTGTCAAGGTGCCAGGTGGGTTTGATTGAGCTTCCTGCTCCCGGCCACAGGTGAACTTTTGTTTATCAATGCCCTTCCTGTGCTTTCAGTTGGCGACCCGAACTTTCAGCGCAAAACGTTGGTGCTCTTGGGTGCACAT
**************************************************......(((...((((...........((.((..(((((((....)))))))..))))........)))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 M053
female body
 M025
embryo
......................................................................TGCTCCCGGCCACAGGTGAACT.................................................................................. 22 0 1 3.00 3 3 0 0 0 0 0
.............................................................................................................................TGGCGACCCGAACTTTCAGCGCAAAACGT.................... 29 0 1 1.00 1 0 1 0 0 0 0
......................................................................................TGAACATTTGTTTATCAACGCC.................................................................. 22 2 1 1.00 1 0 0 0 1 0 0
...........................CGAGGAGGTTGTCAAGGTGC............................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0
......................................................................TGCTCCCGGCCACAGGTGAACTT................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0
..................................................................................................................GTGCATTCAGTTGGCGAC.......................................... 18 1 2 1.00 2 2 0 0 0 0 0
......................................................................TGCTCCCGGCCACAGGTGAACC.................................................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................CTGTGCGTCCCGTTGGCGAC.......................................... 20 3 9 0.22 2 2 0 0 0 0 0
..................................................................................CGGGTGAACAGTTGTTTATC........................................................................ 20 3 9 0.11 1 0 0 0 0 1 0
.........................TACCAGGTGGTTGTCA..................................................................................................................................... 16 2 20 0.10 2 0 2 0 0 0 0
.................................................................CTTCCCGCTCCCGGC.............................................................................................. 15 1 12 0.08 1 0 1 0 0 0 0
............................GAGGAGGTCGACAAGGTG................................................................................................................................ 18 2 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

GAAGCTGTGCGAGCTACACCAGTGCATGCTCCTCCAACAGTTCCACGGTCCACCCAAACTAACTCGAAGGACGAGGGCCGGTGTCCACTTGAAAACAAATAGTTACGGGAAGGACACGAAAGTCAACCGCTGGGCTTGAAAGTCGCGTTTTGCAACCACGAGAACCCACGTGTA
**************************************************......(((...((((...........((.((..(((((((....)))))))..))))........)))).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
.........................................................................AGGGCAGGTGTGCACT..................................................................................... 16 2 20 0.40 8 8
.........................................................................AGGGCAGGTGTGCACTT.................................................................................... 17 2 5 0.40 2 2
.........................................................................AGGGCAGGTGTGCACTTG................................................................................... 18 2 4 0.25 1 1
..................................................................................................................................TGGGGTTGTAAGTCGCGT.......................... 18 2 5 0.20 1 1
..........................................................................GGGCAGGTGTGCACTT.................................................................................... 16 2 20 0.05 1 1

Generated: 04/23/2015 at 12:37 PM