ID:

dsi_961

 Coordinate:

3r:4663249-4663412 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [3r_4663130_4663248_+]; CDS [3r_4663130_4663248_+]; CDS [3r_4663413_4663549_+]; exon [3r_4663413_4664195_+]; intron [3r_4663249_4663412_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGCTCCAGCACCATTAACTTCTACGTGATCTTCCCGTGTGTGCTAAATTGTGAGTAACAATTGAGTAAATTCAGTAATAATGCATTTTAAGTTTAAATTATAAACTTTTAAGGCTTAAAGCTTGTAGATCCTATTAGTTAAAACACCGCACCATTAAGTGAATTGAATTTTTGCAACTAAGTACAAATATGTTTCAATCTTTAACCTTTTTAGCTATAACTCTACTGGGCCTCATCTACATACCCAAACGACTGCGGCTCTGG
**************************************************....(((....(((...(((((((((..(((.((.((..(((((((.....)))))))..)).))))).((((.((((...)))).)))).........(((......))).)))))))))...))).....))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
 GSM343915
embryo
 M053
female body
....................................................................................................................................................................................................................TTCTATAACTCTACTGGGCCTCATC........................... 25 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................................TATAACTCTACTGGGCCTCATCTACA....................... 26 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TATAACTCTACTGGGCCTCATCTACAA...................... 27 1 1 1.00 1 0 0 1 0 0 0 0
..................................................GTGAGTAACACGTGAGTAA................................................................................................................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0
...................................................TGAGTAACACGTGAGTA.................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 1 0 0 0
.......................................................................................................................................................................ATTTTTGCAACTAGG.................................................................................. 15 1 20 0.10 2 0 0 0 2 0 0 0
..................................................GTGAGTAACACGTGAGT..................................................................................................................................................................................................... 17 2 12 0.08 1 0 0 0 1 0 0 0
..........................................GCTAACTGGTGAGTAACAC........................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 0 1 0 0
....................................................................ATTTCAGTAATAATGCCT.................................................................................................................................................................................. 18 2 18 0.06 1 0 0 0 0 0 1 0
..........................................GCTAAGTAGTGTGTAACAA........................................................................................................................................................................................................... 19 3 19 0.05 1 0 0 0 0 0 0 1

Anti-sense strand reads

AGCGAGGTCGTGGTAATTGAAGATGCACTAGAAGGGCACACACGATTTAACACTCATTGTTAACTCATTTAAGTCATTATTACGTAAAATTCAAATTTAATATTTGAAAATTCCGAATTTCGAACATCTAGGATAATCAATTTTGTGGCGTGGTAATTCACTTAACTTAAAAACGTTGATTCATGTTTATACAAAGTTAGAAATTGGAAAAATCGATATTGAGATGACCCGGAGTAGATGTATGGGTTTGCTGACGCCGAGACC
**************************************************....(((....(((...(((((((((..(((.((.((..(((((((.....)))))))..)).))))).((((.((((...)))).)))).........(((......))).)))))))))...))).....))).............................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
............................................................................................................................................TTTTGTGGCGTGGTGATTTGCT...................................................................................................... 22 3 1 1.00 1 1 0 0 0 0
.......TCGTGGTAATTGAAGATGCAC............................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0
...........................................................................................................................................TTTTTGTGGCGTGGTGATT.......................................................................................................... 19 2 3 0.33 1 1 0 0 0 0
..............................................................................................ATTTAATATTTGAAA........................................................................................................................................................... 15 0 7 0.14 1 0 0 1 0 0
..................................................................................................................................................................................................................................ACCCGGACTCGATGTAGGGG.................. 20 3 7 0.14 1 0 0 0 1 0
.............................................................AACTGACTTAAGTCATTA......................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1
............................................................................................................................................................................ACGTTGATTCCTGTT............................................................................. 15 1 15 0.07 1 0 0 1 0 0
.........................................GCGATTTAACACACATTGC............................................................................................................................................................................................................ 19 3 19 0.05 1 0 0 0 1 0

Generated: 04/24/2015 at 10:21 AM