dsi_9570

Name	Class	Family	Strand
BEL-7_DTa-I-int	LTR	Pao	-

CGCCTCCAGAAAGTCATACCCGGTGGGACGGCGTCATAAGAGTAGCTATAGTCCGTACAGCTACGGGTCTAATCATGAGAGCCGTCGCGAAACCAGCCGCTCTGCCCATTTCTTTTCTCCCTTCTTTCTTCTCTCACTGAAGCTGTCGCATTATCTATTCATCTATCGTATGCCCATAGGTATATATGTCTAGGCCAAGCTTTCGCTAAGTCAGTCTGCTTATCCGAATAAAACTGAGCATAAATATATA ************************************************...((.((((((((((.(((.......))).)))).(((........)))........................................)))))))).....((((..(((.....(((((((....))))))))))..))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	M024 male body	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis
......................................................................................................................................................................................................................TCTGCTTATCCGAATAAAACT...............	21	0	1	1.00	1	0	1	0	0	0	0
........................................AGTAGCTATAGTCCGTACAG..............................................................................................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0
....................................................................................................TCTGCCCGTTCCATTTCTCCCT................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0
.................ACCCGGGGGGCCGGCGGC.......................................................................................................................................................................................................................	18	3	20	0.20	4	2	0	0	2	0	0
............................................................................................................................................................................................................................TATACGAATAATACTGAG............	18	2	9	0.11	1	1	0	0	0	0	0
......................GTGGGCCGGCGTCATT....................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	1	0
......................................AGAGTATCTACAGTCCGAA.................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	1

GCGGAGGTCTTTCAGTATGGGCCACCCTGCCGCAGTATTCTCATCGATATCAGGCATGTCGATGCCCAGATTAGTACTCTCGGCAGCGCTTTGGTCGGCGAGACGGGTAAAGAAAAGAGGGAAGAAAGAAGAGAGTGACTTCGACAGCGTAATAGATAAGTAGATAGCATACGGGTATCCATATATACAGATCCGGTTCGAAAGCGATTCAGTCAGACGAATAGGCTTATTTTGACTCGTATTTATATAT ************************************************...((.((((((((((.(((.......))).)))).(((........)))........................................)))))))).....((((..(((.....(((((((....))))))))))..))))......************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M023 head	M025 embryo	M024 male body
............................................................................................................................................................................................................CGATTCAGTCAGACGAATAGGCTTAT....................	26	0	1	2.00	2	0	0	2	0	0	0	0	0	0
.......................................................................................GCTTTAGTCAGCGAGATGGG...............................................................................................................................................	20	3	5	1.80	9	0	9	0	0	0	0	0	0	0
...................................................................................................................AGAGGGAAGAAAGAAGA......................................................................................................................	17	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.......................................................................................................CGGGTAAAGACGAGAGGGATGA.............................................................................................................................	22	3	1	1.00	1	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................GATCCGGCTCGAAAGCG............................................	17	1	1	1.00	1	1	0	0	0	0	0	0	0	0
........................................................................................CTTTAGTCAGCGAGATGGG...............................................................................................................................................	19	3	11	0.64	7	0	7	0	0	0	0	0	0	0
..............................................................................................................................................................................................ATCCGGCTCGAAAGCGA...........................................	17	1	3	0.33	1	1	0	0	0	0	0	0	0	0
..........................CTGCCGTAGTATTCT.................................................................................................................................................................................................................	15	1	7	0.29	2	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................ATCCGGCTCGAAAGCG............................................	16	1	4	0.25	1	1	0	0	0	0	0	0	0	0
.....GGCCTTTCAGTATCGGACAC.................................................................................................................................................................................................................................	20	3	4	0.25	1	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................ATTGGCTTATTTTGACTCGTATT.......	23	1	4	0.25	1	0	0	0	0	1	0	0	0	0
...........................................................................................TGGTCTGCGAGACGG................................................................................................................................................	15	1	5	0.20	1	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................ATCCGGCTCGAAAACGAATCA.......................................	21	3	5	0.20	1	0	0	0	0	1	0	0	0	0
................................CAGTATTTTCATCGATGT........................................................................................................................................................................................................	18	2	12	0.17	2	0	0	0	0	0	0	1	1	0
............................................................................................................................................................................................AGATCCGGCTCGAAA...............................................	15	1	6	0.17	1	0	0	0	0	1	0	0	0	0
...........................................................................................TGGTCTGCGAGACGGCT..............................................................................................................................................	17	2	6	0.17	1	0	0	1	0	0	0	0	0	0
.......................................................................................GCTTTAGTCAGCGAGATGG................................................................................................................................................	19	3	18	0.17	3	0	3	0	0	0	0	0	0	0
........................................................................................CTTTAGTCTGCGAGATGGG...............................................................................................................................................	19	3	11	0.09	1	0	1	0	0	0	0	0	0	0
..................................................CGGCTATGTCGATGCCCAG.....................................................................................................................................................................................	19	3	12	0.08	1	1	0	0	0	0	0	0	0	0
.......................................CTCATCGATATCAAGAATTT...............................................................................................................................................................................................	20	3	12	0.08	1	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................TTGGAAAGCGATTCAGCCG...................................	19	3	14	0.07	1	1	0	0	0	0	0	0	0	0
...........................................................................................................................................TTCGACTGCGTAATAGA..............................................................................................	17	1	14	0.07	1	1	0	0	0	0	0	0	0	0
...................................................AGGCAGATCGATGCCC.......................................................................................................................................................................................	16	2	16	0.06	1	0	1	0	0	0	0	0	0	0
...................................................................................................................AGAGAGAAGAAAGTAGAG.....................................................................................................................	18	2	20	0.05	1	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................TAGGGTTATTTTGACTTGTC.........	20	3	20	0.05	1	0	0	0	0	0	0	0	0	1
.................................................................................GGCTGCGCTTCGGTCG.........................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	node_8654:15895-16144 -	dsi_9570	C--GCCTCCAGAAAGTCATACCCGGTG-GGACGGCGTCATAAG--AGTAGCTATAGTCCGTACAGCTACGGGTCTAATCATGAGAGCCGTCGCGAAACCAGCCGCTCTGCCCATT----------------------------------------------------------------------------------------------------------------------------TCTT-TTCTCCCTTCTTTCTTCT---CTCACTGAAGCTGTCGCATTATCTATTCA-----------------------------------------------------------------TCT----------------------------------------ATCGTATGCCCATAGGTATATATG-------TCTAGGCCAAGCTTTCGCTAAGTCAGT------------CTGCTTATCCGAATAAAACTGAGCA--------------------------TAAATATATA-
droSec2	scaffold_54:11141-11390 +		C--GCCTCCAGAAAGTCATACCCGGTG-GGACGGCGTCATAAG--AGTAGCTATAGTCCGTACAGCTACGGGTCTAATCATGAGAGCCGTCGCGAAACCAGCCGTTCTGCCCATT----------------------------------------------------------------------------------------------------------------------------TCTT-TTCTCCCTTCTTTCTTCT---CTCACTGAAGCTGTCGCATTATCTATTCA-----------------------------------------------------------------TCT----------------------------------------ATCGTATGCCCATAGGTATATATG-------TCTAGGCCAAGCTTTCGCTAAGTCAGT------------CTGCATATCCGAATAAAAGTGAGCA--------------------------TAAATATATT-
dm3	chrU:1251701-1251936 +		C--GCATCCCGAAAGTCATTCCTGGTG-GGACAGCGTCATAAGGGAGTATAGCTAGTCCATACAGCTAGGGGTCTAATCAAGAGGACCGT----------------CTGCTCATT----------------------------------------------------------------------------------------------------------------------------TATT-TTCGACTTTCTTTCTTCT---CTCACGGAACCTGTCGCATTATCTATTCA-----------------------------------------------------------------TCT----------------------------------------ATTGTATGACTATAGGTATATATG-------TTTAGGCCAAGCTTTCGCTAAGTCAGT------------CTGCATATCCTAATACAACAGAGAA--------------------------TAAATATATA-
droEre2	scaffold_4784:24910903-24911127 -		C--TTC------------CATCCGGTGACGACGGCGGCATCAG--AGTAGCTATGGTCCGTATAGCTACGGCTTTAATGAATGGAGCCTCTGT---------------------------------------------------------------------------------------------------------------------------ACCTGCAGTGCTCTT-----CTCTCTT-TTCGCCCTTCTTTCCTTC--------GACA------GCTTTATCTAGTTT--------ACTT-TT---T--------A--------------------------------------------------------------------------------AGCTTAAGCCTATATTCTTTTATT-------TTAAAGCCAAGCTTTCGTTTATTCAGT------------CTGCATCTCCGAATAAAACAGAACA--------------------------GAAA----CA-
droYak3	v2_chrUn_001:756432-756636 -		G--GCC--------------------------TGAGTCCTTAA--CTTAGCTATGATCCGCACAGCTACCAGTCTAATCAAGAGAGCAATCGCAAAACTAGCCCTTCTGCCCATCCGATTTTAATATAGTTTGAACCGTACCTTTTCTAACGGGGAAGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGTTTATATT-------GTAAAGCCAAGCCTTCGCTTAGCCAGT------------CTGCATCTCCATATAAAACAGAGCG--------------------------TACAAATACA-
droEug1	scf7180000407725:304-408 -		C--GTGTGGAAGAGGTCATGCCACGAGAGAATGGCATCATAAG--AGTAGCTATGATTCGCA-----ACTGGCCTGATCAAGAGGGCTGTTGGAAAACTATCTGCTCTGCCTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1	scf7180000301201:12705-12820 +		T--GCATCCAGGAAGTCATACCCGGCGGGGACGAAGTCATCAG--AGTAACTATGGTTCGTAAAGCTACGAGTCTGATCAAGAGAGCCGTCGCTAAACTAGCCGTTCTGCCAATC-GATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000411008:504-837 -		C--GCATCGAGGAAGTCATACCCGGCGGGGACGGAGTCATCAG--AGTAGCTATGGTCCGTGTAGCTACGAGTCTGATCG-------------------------------------ATTCCGAGATAGTTGGAACCTTACCTCTTCCAACGGGT--GGAGTATGTTCGGAGCAGAGAGCCAGCGCCTAGTCATGCGCGCATAGGTGTACGACGGCACCTGCAGCGCTCTTTGCTTATCTTTT-GTCGC-CGTCTCTCTCAT---TCTCCTAAAGCTGTCGC-TTATCTATTCAGCG--ACTACTT-TG---T--------A--------------------------------------------------------------------------------------GGCCTGCATATATATATTA-ATAGCGTGGAGCCAAC--TTTGCCGTTGCCGT------------TTGCCGCTCCGAATAAAT-----------------------------------GATATACA-
droEle1	scf7180000490425:5309-5664 +		T--GAATCCATGAAGTCATACACGGAACGGACGGCGTCGTCAG--AGTAGGTGTGGTCCGGACAGCTACAGGTCTTACCAAAAGGGCCGTGACTAAAGTAGCCGCTCTGCCCATC-GAATCCCA-----TTGGAACCGTGCCTCTTCCAACGGGA--GTAGTATGTTTAAAGC-----------------------------------AGAGCTGCACACGCAGGGCTGTTACA-CAGCTTTGCATGTT-CGTATTTCTTAT---CTCGCTACATTTGTCGCGTTATCTATTCAGCTGAGCTACAG-CG-----------AAAACATGTACAA--------------------------------------------------------------------------------------AAAT----------ATGAAGTCAAGCTTTCGGCAAGTCAGTTATACAAAATCGCTGCAACTCCGAGCA-----------------CAGCTAATAAAATCAAGAAATAATTTCAA-
droRho1	scf7180000776743:6193-6515 -		T--GCATCCACGGAGTCGTTCCAGGCGAGGACGGCGTCGTCAG--AGTAGCTATGGTCCA----GTTA-TGGTCTAGTTAAGAGAGCCGTCGCCAAGTTAGCCGTTCTGCCCATC-GATTCCCATTTAGTTGGAGCCCTACTTCCTCCAACGGAG-------------------------------------------GCAAAGGTGTATGGCTGAACCTGCAGCGCTCTC-----CTCTTTA-------TATTTTCCTTAT---CTCGCT-AAGCTGTCGCTCTACCTATTCAGCG--ACTACAT-GG---T-------AAGACCCGAATTAAAATATGAAGCCTGGCTTTCG-----------------------------------------------------------------------------------------------GCTGCTGCGG--------------TGCAGATTCGACTGG--CAGAG---TAAACACGAC-------------A-CATACGTAAA-
droFic1	scf7180000449792:627-930 -		C-------CAAGGAGTCATACCCGGCGAGGACGGAATCGTCAG--AGTAGCTATGGTCTGGACAGATACGGGC-----------AGCCGCCTCCAAA----CCGTTCTGCTCATC-GACTTTCAAATA-TAGGAACCGTACCACTTCCGACGTTG---------------------------------------------------------------------TTATCTC-----ATCTATC-ATCTATGTTATATATATA--------GCCA------AGTTTCTCTTGCAA--------ACTT-CTTTAT--------A----------A-----ACTAGCCGCGCTTTCGGCCGGTCCAAAGACAACCACAGTTCAAGCTTACACTTATCTCGCATGCAT--------TGTACACATATATCACAAAACATAAA----------------------------------ACGCAGCTCCAA-----------------------------------------AATATACAC
droKik1	scf7180000300973:9339-9669 -		C--GCATCGAGGACGTC------GGCGGAGACGGCGTCATCAG--AGTAGCTATGGTCCGTACCGCTACGGGTCTTATCAAGAGAGCCGTCGCCAAACTAGCCGCTCTGCCCATC-GATTCCGAGATGGTTGGATAGGT-----------------------------------------------------------GCATAGGTGTACCGCTGCACCTGCAGCGCTCTTATGTTTTCTCTT-TGCTA-CTCTTTTCTTAT---CTCGCTAAAGCTGTCGCGTTATCTAT-CAGCAAAACTACATTTG---TTATCCCATAAACATGTATAT---------------------------AT----------------------------------------AT----TGAACATGTATATATATT--------------------TTTATACACACAGT------------CTGCAGCTCCGATGAAACACAAGCATTAAACACGGC--------------------TTATA-
droAna3	scaffold_5095:3949-4058 +		A--GAATTCTGGATCTAGTTCCTGGTCAGGATGGAGTGCCTCG--AGTGGCGGTGGTTAGAACCGCTTCTGGAACTACCAAGCGCGCAGTGACCAAGCTTTGCTTATTGCCCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000395577:14446-14608 -		A--GAATAATGGAGTTAATCCCTGGTCGAGATGGAGTCTTTCG--AGTGGCGGTGATTAAAACCTCATCTGGAATTACCAAGCAAGCAGTATCTAAGCTGT--GCCCTGCTTGGT------------------------------------------------------------------------------------------------------------------------------------GCCACTCTCGCTTTTGATCTTATT---GCGCTCGCATCCTAAATTGG-----------------------------------------------------------------TCT----------------------------------------ATCATAT-----------------------------------------------------------------------------------------------------------------------------
dp5	Unknown_group_234:5477-5587 -		C--GCATTGAGAGCGTCATCCCAGGAAAAGATGGGACCATCAG--AGTAGCCGTCATCCGCACCCAAACAGGCCTTTTCAAGAGGGCCGTTGGAAAAATAGCGGTTCTGCCCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2	scaffold_587:8768-8888 -		C--GCATTGAGAGCGTCATCCCAGGAAAAGATGGAACCATCAG--AGTAGCCGTCATCCGCACTCAAAGAGGCCTTTTCAAGAGGGCCGTTGGAAAAATAGCGGTTCTTCTATTT----------------------------------------------------------------------------------------------------------------------------CCCT-TCATCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000003606:9368-9426 +		C--GTGTGGTCGAAGCCATACTTGGTGCAGATGGAAGGGTCAG--AGTAGCCGATGTTCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3	scaffold_13050:2142076-2142185 +		C--GAGTCGACAGCGTCATCACCGGTGACGACGGCATTGTGAG--AGTAGCAGTCATTCGTACACAAAATGGTCTGGTCAAGAGAGCCATTGCCAAAATATCCGTTCTGCCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_282:879-963 -		CCAGAATAATCGAACTTATCCCTGGAAGTGATGGCGTTGCACG--GGTAGCCCTACTAAAAACAGAAGCTGGCGAGATAAGAAGAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_14481:1090-1092 +		C--GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

C--GCCTCCAGAAAGTCATACCCGGTG-GGACGGCGTCATAAG--AGTAGCTATAGTCCGTACAGCTACGGGTCTAATCATGAGAGCCGTCGCGAAACCAGCCGCTCTGCCCATT----------------------------------------------------------------------------------------------------------------------------TCTT-TTCTCCCTTCTTTCTTCT---CTCACTGAAGCTGTCGCATTATCTATTCA-----------------------------------------------------------------TCT----------------------------------------ATCGTATGCCCATAGGTATATATG-------TCTAGGCCAAGCTTTCGCTAAGTCAGT------------CTGCTTATCCGAATAAAACTGAGCA--------------------------TAAATATATA-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------CTGCTTATCCGAATAAAACT..........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................AGTAGCTATAGTCCGTACAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

C--GCCTCCAGAAAGTCATACCCGGTG-GGACGGCGTCATAAG--AGTAGCTATAGTCCGTACAGCTACGGGTCTAATCATGAGAGCCGTCGCGAAACCAGCCGTTCTGCCCATT----------------------------------------------------------------------------------------------------------------------------TCTT-TTCTCCCTTCTTTCTTCT---CTCACTGAAGCTGTCGCATTATCTATTCA-----------------------------------------------------------------TCT----------------------------------------ATCGTATGCCCATAGGTATATATG-------TCTAGGCCAAGCTTTCGCTAAGTCAGT------------CTGCATATCCGAATAAAAGTGAGCA--------------------------TAAATATATT-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

C--GCATCCCGAAAGTCATTCCTGGTG-GGACAGCGTCATAAGGGAGTATAGCTAGTCCATACAGCTAGGGGTCTAATCAAGAGGACCGT----------------CTGCTCATT----------------------------------------------------------------------------------------------------------------------------TATT-TTCGACTTTCTTTCTTCT---CTCACGGAACCTGTCGCATTATCTATTCA-----------------------------------------------------------------TCT----------------------------------------ATTGTATGACTATAGGTATATATG-------TTTAGGCCAAGCTTTCGCTAAGTCAGT------------CTGCATATCCTAATACAACAGAGAA--------------------------TAAATATATA-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................CATAAGGGAGTATAGCTAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CAGCGTCATAAGGGAGTATA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................ATCAAGAGGACCGT----------------CTGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................TAAGGGAGTATAGCTAGTCCATACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................TCAAGAGGACCGT----------------CTGCTCATT----------------------------------------------------------------------------------------------------------------------------TAT....................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTAATACAACAGAGAA--------------------------TAAATA.....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TCCCGAAAGTCATTCCTGGTG-GGACAGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TCATTCCTGGTG-GGACAGCGTCATAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................TCCTGGTG-GGACAGCGTCATAAGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................TACAGCTAGGGGTCTAATCAAGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................CTATTCA-----------------------------------------------------------------TCT----------------------------------------ATTGTATGA...........................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTCGACTTTCTTTCTTCT---CTCACGGA.....................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................AGGTATATATG-------TTTAGGCCAAGCT........................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................AGCGTCATAAGGGAGTATAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................GGTG-GGACAGCGTCATAAGGGAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................AATCAAGAGGACCGT----------------CTGCTC......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......TCCCGAAAGTCATTCCTGGTG-GGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

C--TTC------------CATCCGGTGACGACGGCGGCATCAG--AGTAGCTATGGTCCGTATAGCTACGGCTTTAATGAATGGAGCCTCTGT---------------------------------------------------------------------------------------------------------------------------ACCTGCAGTGCTCTT-----CTCTCTT-TTCGCCCTTCTTTCCTTC--------GACA------GCTTTATCTAGTTT--------ACTT-TT---T--------A--------------------------------------------------------------------------------AGCTTAAGCCTATATTCTTTTATT-------TTAAAGCCAAGCTTTCGTTTATTCAGT------------CTGCATCTCCGAATAAAACAGAACA--------------------------GAAA----CA-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

G--GCC--------------------------TGAGTCCTTAA--CTTAGCTATGATCCGCACAGCTACCAGTCTAATCAAGAGAGCAATCGCAAAACTAGCCCTTCTGCCCATCCGATTTTAATATAGTTTGAACCGTACCTTTTCTAACGGGGAAGAAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGGTTTATATT-------GTAAAGCCAAGCCTTCGCTTAGCCAGT------------CTGCATCTCCATATAAAACAGAGCG--------------------------TACAAATACA-

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

C--GTGTGGAAGAGGTCATGCCACGAGAGAATGGCATCATAAG--AGTAGCTATGATTCGCA-----ACTGGCCTGATCAAGAGGGCTGTTGGAAAACTATCTGCTCTGCCTAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

T--GCATCCAGGAAGTCATACCCGGCGGGGACGAAGTCATCAG--AGTAACTATGGTTCGTAAAGCTACGAGTCTGATCAAGAGAGCCGTCGCTAAACTAGCCGTTCTGCCAATC-GATTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C--GCATCGAGGAAGTCATACCCGGCGGGGACGGAGTCATCAG--AGTAGCTATGGTCCGTGTAGCTACGAGTCTGATCG-------------------------------------ATTCCGAGATAGTTGGAACCTTACCTCTTCCAACGGGT--GGAGTATGTTCGGAGCAGAGAGCCAGCGCCTAGTCATGCGCGCATAGGTGTACGACGGCACCTGCAGCGCTCTTTGCTTATCTTTT-GTCGC-CGTCTCTCTCAT---TCTCCTAAAGCTGTCGC-TTATCTATTCAGCG--ACTACTT-TG---T--------A--------------------------------------------------------------------------------------GGCCTGCATATATATATTA-ATAGCGTGGAGCCAAC--TTTGCCGTTGCCGT------------TTGCCGCTCCGAATAAAT-----------------------------------GATATACA-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

T--GAATCCATGAAGTCATACACGGAACGGACGGCGTCGTCAG--AGTAGGTGTGGTCCGGACAGCTACAGGTCTTACCAAAAGGGCCGTGACTAAAGTAGCCGCTCTGCCCATC-GAATCCCA-----TTGGAACCGTGCCTCTTCCAACGGGA--GTAGTATGTTTAAAGC-----------------------------------AGAGCTGCACACGCAGGGCTGTTACA-CAGCTTTGCATGTT-CGTATTTCTTAT---CTCGCTACATTTGTCGCGTTATCTATTCAGCTGAGCTACAG-CG-----------AAAACATGTACAA--------------------------------------------------------------------------------------AAAT----------ATGAAGTCAAGCTTTCGGCAAGTCAGTTATACAAAATCGCTGCAACTCCGAGCA-----------------CAGCTAATAAAATCAAGAAATAATTTCAA-	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T--GCATCCACGGAGTCGTTCCAGGCGAGGACGGCGTCGTCAG--AGTAGCTATGGTCCA----GTTA-TGGTCTAGTTAAGAGAGCCGTCGCCAAGTTAGCCGTTCTGCCCATC-GATTCCCATTTAGTTGGAGCCCTACTTCCTCCAACGGAG-------------------------------------------GCAAAGGTGTATGGCTGAACCTGCAGCGCTCTC-----CTCTTTA-------TATTTTCCTTAT---CTCGCT-AAGCTGTCGCTCTACCTATTCAGCG--ACTACAT-GG---T-------AAGACCCGAATTAAAATATGAAGCCTGGCTTTCG-----------------------------------------------------------------------------------------------GCTGCTGCGG--------------TGCAGATTCGACTGG--CAGAG---TAAACACGAC-------------A-CATACGTAAA-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

C-------CAAGGAGTCATACCCGGCGAGGACGGAATCGTCAG--AGTAGCTATGGTCTGGACAGATACGGGC-----------AGCCGCCTCCAAA----CCGTTCTGCTCATC-GACTTTCAAATA-TAGGAACCGTACCACTTCCGACGTTG---------------------------------------------------------------------TTATCTC-----ATCTATC-ATCTATGTTATATATATA--------GCCA------AGTTTCTCTTGCAA--------ACTT-CTTTAT--------A----------A-----ACTAGCCGCGCTTTCGGCCGGTCCAAAGACAACCACAGTTCAAGCTTACACTTATCTCGCATGCAT--------TGTACACATATATCACAAAACATAAA----------------------------------ACGCAGCTCCAA-----------------------------------------AATATACAC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C--GCATCGAGGACGTC------GGCGGAGACGGCGTCATCAG--AGTAGCTATGGTCCGTACCGCTACGGGTCTTATCAAGAGAGCCGTCGCCAAACTAGCCGCTCTGCCCATC-GATTCCGAGATGGTTGGATAGGT-----------------------------------------------------------GCATAGGTGTACCGCTGCACCTGCAGCGCTCTTATGTTTTCTCTT-TGCTA-CTCTTTTCTTAT---CTCGCTAAAGCTGTCGCGTTATCTAT-CAGCAAAACTACATTTG---TTATCCCATAAACATGTATAT---------------------------AT----------------------------------------AT----TGAACATGTATATATATT--------------------TTTATACACACAGT------------CTGCAGCTCCGATGAAACACAAGCATTAAACACGGC--------------------TTATA-	Size	Hit Count	Total Norm	Total
No Reads

droAna3

A--GAATTCTGGATCTAGTTCCTGGTCAGGATGGAGTGCCTCG--AGTGGCGGTGGTTAGAACCGCTTCTGGAACTACCAAGCGCGCAGTGACCAAGCTTTGCTTATTGCCCTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......TCTGGATCTAGTTCCTGGTCAGGATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	14	0.21	3	3	0	0	0	0	0
........CTGGATCTAGTTCCTGGTCAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	16	0.19	3	3	0	0	0	0	0
........CTGGATCTAGTTCCTGGTCAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	16	0.19	3	3	0	0	0	0	0
.....................................GCCTCG--AGTGGCGGTGGTTAGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	1	2	0	0	0	0
.......TCTGGATCTAGTTCCTGGTCAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	14	0.14	2	2	0	0	0	0	0
.........TGGATCTAGTTCCTGGTCAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	16	0.13	2	1	0	1	0	0	0
.........TGGATCTAGTTCCTGGTCAGGATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	16	0.13	2	1	1	0	0	0	0
....................................TGCCTCG--AGTGGCGGTGGTTAGAACC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	2	0	0	0	0	0
..........................................................................CTACCAAGCGCGCAGTGACCAAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	2	0	0	0	0
..............................................................................CAAGCGCGCAGTGACCAAGCTTTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
..................................................................TTCTGGAACTACCAAGCGCGCAGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	1	1	0	0	0	0
...................TCCTGGTCAGGATGGAGTGCCTCG--AGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	13	0.08	1	1	0	0	0	0	0
..................TTCCTGGTCAGGATGGAGTGCCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	13	0.08	1	0	1	0	0	0	0
........CTGGATCTAGTTCCTGGTCAGGATGGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	1	0	0	0	0	0
......TTCTGGATCTAGTTCCTGGTCAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	14	0.07	1	1	0	0	0	0	0
.......TCTGGATCTAGTTCCTGGTCAGGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.07	1	1	0	0	0	0	0
......TTCTGGATCTAGTTCCTGGTCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.07	1	1	0	0	0	0	0
.......TCTGGATCTAGTTCCTGGTCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	14	0.07	1	1	0	0	0	0	0
...............TAGTTCCTGGTCAGGATGGAGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	14	0.07	1	1	0	0	0	0	0
...............TAGTTCCTGGTCAGGATGGAGTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	14	0.07	1	0	0	0	0	1	0
..................TTCCTGGTCAGGATGGAGTGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	1	0	0	0	0
........CTGGATCTAGTTCCTGGTCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	16	0.06	1	1	0	0	0	0	0
.........TGGATCTAGTTCCTGGTCAGGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	1	0	0	0	0	0
..........GGATCTAGTTCCTGGTCAGGATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	1	0	0	0	0	0
........CTGGATCTAGTTCCTGGTCAGGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	16	0.06	1	1	0	0	0	0	0
.....................................GCCTCG--AGTGGCGGTGGTTAGAACCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................................................................................TGACCAAGCTTTGCTTATTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...................................................................................GCGCAGTGACCAAGCTTTGCTTATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
...................................................................................GCGCAGTGACCAAGCTTTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..........................................................................CTACCAAGCGCGCAGTGACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
........................GTCAGGATGGAGTGCCTCG--AGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.........................TCAGGATGGAGTGCCTCG--AGTGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
............................................................AACCGCTTCTGGAACTACCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..........................................................................CTACCAAGCGCGCAGTGACCAAGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.................................................................................GCGCGCAGTGACCAAGCTTTGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
..........................CAGGATGGAGTGCCTCG--AGTGGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
...................................................................TCTGGAACTACCAAGCGCGCAGT............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
....................................................................CTGGAACTACCAAGCGCGCAGTGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..........................................................................CTACCAAGCGCGCAGTGAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
........................GTCAGGATGGAGTGCCTCG--AGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1
..............................................................................CAAGCGCGCAGTGACCAAGCTTTGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
......................TGGTCAGGATGGAGTGCCTCG--AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.................................GAGTGCCTCG--AGTGGCGGTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................................CTGGAACTACCAAGCGCGCAGTGACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.....................................................................TGGAACTACCAAGCGCGCAGTGACCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
.........................TCAGGATGGAGTGCCTCG--AGTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..........................................................................CTACCAAGCGCGCAGTGACCAAGCTTTG................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
.......................................................................GAACTACCAAGCGCGCAGTGACCAAGCTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
...................................................................TCTGGAACTACCAAGCGCGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droBip1

A--GAATAATGGAGTTAATCCCTGGTCGAGATGGAGTCTTTCG--AGTGGCGGTGATTAAAACCTCATCTGGAATTACCAAGCAAGCAGTATCTAAGCTGT--GCCCTGCTTGGT------------------------------------------------------------------------------------------------------------------------------------GCCACTCTCGCTTTTGATCTTATT---GCGCTCGCATCCTAAATTGG-----------------------------------------------------------------TCT----------------------------------------ATCATAT-----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dp5

C--GCATTGAGAGCGTCATCCCAGGAAAAGATGGGACCATCAG--AGTAGCCGTCATCCGCACCCAAACAGGCCTTTTCAAGAGGGCCGTTGGAAAAATAGCGGTTCTGCCCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.........................................................................................TTGGAAAAATAGCGGTTCTGCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	18	3.78	68	0	65	0	0	0	0	0	2	1	0
.........................................................................................TTGGAAAAATAGCGGTTCTGCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	18	2.83	51	0	44	4	0	0	0	0	3	0	0
........................................................................................GTTGGAAAAATAGCGGTTCTGCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	18	2.39	43	0	42	1	0	0	0	0	0	0	0
........................................................................................GTTGGAAAAATAGCGGTTCTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	18	2.33	42	0	37	4	1	0	0	0	0	0	0
.........................................................................................TTGGAAAAATAGCGGTTCTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	18	1.72	31	0	23	4	0	0	0	3	0	1	0
..........................................................................................TGGAAAAATAGCGGTTCTGCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	1.53	29	0	27	1	0	0	0	0	1	0	0
........................................................................................GTTGGAAAAATAGCGGTTCTGCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	18	1.50	27	0	26	0	0	0	1	0	0	0	0
.............................................................................TCAAGAGGGCCGTTGGAAAAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	1.20	24	0	0	0	0	0	0	0	24	0	0
..................TCCCAGGAAAAGATGGGACCATCAG--AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CCAGGAAAAGATGGGACCATCAG--AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................TGGAAAAATAGCGGTTCTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	19	0.89	17	0	14	3	0	0	0	0	0	0	0
..............................................................................CAAGAGGGCCGTTGGAAAAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.80	16	0	0	0	0	0	0	1	4	11	0
..........................................................................................TGGAAAAATAGCGGTTCTGCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	19	0.53	10	0	9	0	0	0	0	0	1	0	0
.............................................................................TCAAGAGGGCCGTTGGAAAAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.45	9	0	4	0	0	0	0	0	0	5	0
.............................................................................TCAAGAGGGCCGTTGGAAAAATAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.45	9	0	3	0	0	0	0	0	3	3	0
.........................................................................................TTGGAAAAATAGCGGTTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	18	0.44	8	0	8	0	0	0	0	0	0	0	0
........................................................................................GTTGGAAAAATAGCGGTTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	18	0.39	7	0	4	2	1	0	0	0	0	0	0
.........................................................................................TTGGAAAAATAGCGGTTCTGCCCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	26	18	0.39	7	0	6	0	0	0	0	1	0	0	0
..............................................................................CAAGAGGGCCGTTGGAAAAATAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	0	2	0	0	0	0	0	1	4	0
..........................................................................................TGGAAAAATAGCGGTTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	19	0.32	6	0	5	0	0	0	0	0	0	1	0
.......................................................................................CGTTGGAAAAATAGCGGTTCTGCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	18	0.28	5	0	5	0	0	0	0	0	0	0	0
............................................................................TTCAAGAGGGCCGTTGGAAAAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.25	5	0	2	0	0	0	0	0	0	3	0
.......TGAGAGCGTCATCCCAGGAAAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	9	0.22	2	0	1	0	0	0	0	1	0	0	0
........................................................................................GTTGGAAAAATAGCGGTTCTGCCCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	27	18	0.22	4	0	3	0	0	0	0	1	0	0	0
..........................................................................................TGGAAAAATAGCGGTTCTGCCCCTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	25	19	0.21	4	0	4	0	0	0	0	0	0	0	0
..............................................................................CAAGAGGGCCGTTGGAAAAATAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.20	4	0	0	0	0	0	0	0	0	4	0
........................................................................................GTTGGAAAAATAGCGGTTCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.20	4	0	4	0	0	0	0	0	0	0	0
..............................................................................CAAGAGGGCCGTTGGAAAAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	1	0	0	0	0	0	0	3	0
.......................................................................................CGTTGGAAAAATAGCGGTTCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	0	4	0	0	0	0	0	0	0	0
............................................................................TTCAAGAGGGCCGTTGGAAAAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.20	4	0	0	1	0	0	0	0	0	3	0
...........................................................................TTTCAAGAGGGCCGTTGGAAAAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................CGTTGGAAAAATAGCGGTTCTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	18	0.17	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................TTGGAAAAATAGCGGTTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	3	0	0	0	0	0	0	0	0
............................................................................................GAAAAATAGCGGTTCTGCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......TGAGAGCGTCATCCCAGGAAAAGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	8	0.13	1	0	0	0	0	0	0	1	0	0	0
......TTGAGAGCGTCATCCCAGGAAAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	8	0.13	1	0	1	0	0	0	0	0	0	0	0
......................................................................................CCGTTGGAAAAATAGCGGTTCTGCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	27	18	0.11	2	0	2	0	0	0	0	0	0	0	0
......................................................................................CCGTTGGAAAAATAGCGGTTCTGCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................	28	18	0.11	2	0	2	0	0	0	0	0	0	0	0
.............................................................................TCAAGAGGGCCGTTGGAAAAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	1	0	0	0	0	1	0	0	0
..........................................................................TTTTCAAGAGGGCCGTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	0	0	0	0	0	0	0	1	0
.............................................................................TCAAGAGGGCCGTTGGAAAAATAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	1	1	0
.............................................................................TCAAGAGGGCCGTTGGAAAAATAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	2	0
............................................................................TTCAAGAGGGCCGTTGGAAAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...............................................................................AAGAGGGCCGTTGGAAAAATAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	0	0	0	0	2	0
...............................................................................AAGAGGGCCGTTGGAAAAATAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	0	0	0	0	2	0
..........................................................................................TGGAAAAATAGCGGTTCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................GTTGGAAAAATAGCGGTTCTGCCA......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	1	0	0	0	0	1	0	0	0
.......TGAGAGCGTCATCCCAGGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0	0	0	0	0
.............................................................................TCAAGAGGGCCGTTGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	2	0	0	0	0	0	0	0	0
..............................................................................CAAGAGGGCCGTTGGAAAAATAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	0	0	0	0	0	1	1	0
.............................................................................................AAAAATAGCGGTTCTGCCCCT....................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...........................................................................TTTCAAGAGGGCCGTTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	11	0.09	1	0	0	0	0	0	0	0	1	0	0
....................................................................................GGCCGTTGGAAAAATAGCGGTTCTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	28	17	0.06	1	0	1	0	0	0	0	0	0	0	0
........................................................................................GTTGGAAAAATAGCGGTTCTGCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................CGTTGGAAAAATAGCGGTTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................CCGTTGGAAAAATAGCGGTTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	18	0.06	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................TTGGAAAAATAGCGGTTCTGCCCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	18	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................CCGTTGGAAAAATAGCGGTTCTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	1	0	0	0	0	0	0	0	0
........................................................................................GTTGGAAAAATAGCGGTTCTGCCT......................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	0	0	1	0	0	0	0	0	0
............................................................................TTCAAGAGGGCCGTTGGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................GAGGGCCGTTGGAAAAATAGCGGTTC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...............................................................................AAGAGGGCCGTTGGAAAAATAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................AAATAGCGGTTCTGCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................CAAGAGGGCCGTTGGAAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................TTCAAGAGGGCCGTTGGAAAAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	1	0	0	0
...............................................................................AAGAGGGCCGTTGGAAAAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
.............................................................................................AAAAATAGCGGTTCTGCCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................AAAAATAGCGGTTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...........................................................................................GGAAAAATAGCGGTTCTGCCCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................CGTTGGAAAAATAGCGGTTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................GAGGGCCGTTGGAAAAATAGCGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
................................................................................AGAGGGCCGTTGGAAAAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	1	0	0
...............................................................................AAGAGGGCCGTTGGAAAAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................TTGGAAAAATAGCGGTTCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................AGAGGGCCGTTGGAAAAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
................................................................................AGAGGGCCGTTGGAAAAATAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................CGTTGGAAAAATAGCGGTTCTGCCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................TTCAAGAGGGCCGTTGGAAAAATAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................GAGGGCCGTTGGAAAAATAGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	1	0	0
........................................................................................GTTGGAAAAATAGCGGTTCTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................GAGGGCCGTTGGAAAAATAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.................................................................................GAGGGCCGTTGGAAAAATAGCGGTT............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................TTCAAGAGGGCCGTTGGAAAAATAGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	1	0
.............................................................................TCAAGAGGGCCGTTGGAAAAAT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	1	0
...............................................................................AAGAGGGCCGTTGGAAAAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	1	0
..........................................................................................TGGAAAAATAGCGGTTCTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................AGAGGGCCGTTGGAAAAATAGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................GGAAAAATAGCGGTTCTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................GGAAAAATAGCGGTTCTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

C--GCATTGAGAGCGTCATCCCAGGAAAAGATGGAACCATCAG--AGTAGCCGTCATCCGCACTCAAAGAGGCCTTTTCAAGAGGGCCGTTGGAAAAATAGCGGTTCTTCTATTT----------------------------------------------------------------------------------------------------------------------------CCCT-TCATCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...........................................................................TTTCAAGAGGGCCGTTGGAAAAATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.15	3	0	3	0	0	0	0
...............................................TAGCCGTCATCCGCACTCAAAGAGGCCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.10	2	0	2	0	0	0	0
...................CCCAGGAAAAGATGGAACCATCAG--A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0
...................CCCAGGAAAAGATGGAACCATCAG--AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
.............................................................................TCAAGAGGGCCGTTGGAAAAATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
...............................................TAGCCGTCATCCGCACTCAAAGAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0

droWil2

C--GTGTGGTCGAAGCCATACTTGGTGCAGATGGAAGGGTCAG--AGTAGCCGATGTTCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................CAG--AGTAGCCGATGTTCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	21	20	0.05	1	0	1	0	0	0
..................TACTTGGTGCAGATGGAAGGGTCAG--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..........................GCAGATGGAAGGGTCAG--AGTAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
......................................GTCAG--AGTAGCCGATGTTCGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
......................TGGTGCAGATGGAAGGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
.......................................TCAG--AGTAGCCGATGTTCGCA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
..................................AAGGGTCAG--AGTAGCCGATGTTCGCAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	27	20	0.05	1	0	0	0	1	0
................CATACTTGGTGCAGATGGAAGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
..........................GCAGATGGAAGGGTCAG--AGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
.............................GATGGAAGGGTCAG--AGTAGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1

droVir3

C--GAGTCGACAGCGTCATCACCGGTGACGACGGCATTGTGAG--AGTAGCAGTCATTCGTACACAAAATGGTCTGGTCAAGAGAGCCATTGCCAAAATATCCGTTCTGCCAAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................CATTCGTACACAAAATGGTCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	7	1.86	13	0	0	0	0	7	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CATTCGTACACAAAATGGTCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	1.29	9	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TAGCAGTCATTCGTACACAAAATGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	1.14	8	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.........................................................TCGTACACAAAATGGTCTGGTCAAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	6	1.00	6	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCGTACACAAAATGGTCTGGTCAAGAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.83	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CATTCGTACACAAAATGGTCTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	8	0.75	6	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CATTCGTACACAAAATGGTCTGGTCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCGTACACAAAATGGTCTGGTCAAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.50	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCGTACACAAAATGGTCTGGTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	6	0.33	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GTACACAAAATGGTCTGGTCAAGAGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.29	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCGTACACAAAATGGTCTGGTCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CATTCGTACACAAAATGGTCTGGTCAAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	6	0.17	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................ATTGTGAG--AGTAGCAGTCATTCGTACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................GAG--AGTAGCAGTCATTCGTACACAAAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................TAGCAGTCATTCGTACACAAAATGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................AGCAGTCATTCGTACACAAAATGGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................TCATTCGTACACAAAATGGTCTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................CATTCGTACACAAAATGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................GTACACAAAATGGTCTGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................TGGTCTGGTCAAGAGAGCCATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCAGAATAATCGAACTTATCCCTGGAAGTGATGGCGTTGCACG--GGTAGCCCTACTAAAAACAGAAGCTGGCGAGATAAGAAGAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........TCGAACTTATCCCTGGAAGTGATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.35	7	6	1	0	0	0	0
..................................................CCCTACTAAAAACAGAAGCTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.20	4	3	0	0	0	1	0
..................................................CCCTACTAAAAACAGAAGCTGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	3	0	0	0	0	0
...............................................................AGAAGCTGGCGAGATAAGAAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2
........ATCGAACTTATCCCTGGAAGTGATGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.10	2	0	0	0	0	2	0
........ATCGAACTTATCCCTGGAAGTGATG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	0	0	0	0	2	0
..................................................CCCTACTAAAAACAGAAGCTGGCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.10	2	2	0	0	0	0	0
..................................................CCCTACTAAAAACAGAAGCTGGCGAGATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	1	0	0	0	0	0
..............................................................CAGAAGCTGGCGAGATAAGAAGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	1
..................................................CCCTACTAAAAACAGAAGCTGGCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
..................................................CCCTACTAAAAACAGAAGCTGGCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..............................ATGGCGTTGCACG--GGTAGCCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..........................................................AAAACAGAAGCTGGCGAGATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
...............TTATCCCTGGAAGTGATGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
..............................................................CAGAAGCTGGCGAGATAAGAAGAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	25	20	0.05	1	0	0	0	0	0	1
.......................................................CTAAAAACAGAAGCTGGCGAGATAAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.................ATCCCTGGAAGTGATGGCGTTGCAAA--.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
............................TGATGGCGTTGCACG--GGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0
...................................................CCTACTAAAAACAGAAGCTGGCGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
.................ATCCCTGGAAGTGATGGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
........................................................TAAAAACAGAAGCTGGCGAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
........................................................TAAAAACAGAAGCTGGCGAGATAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1
...GAATAATCGAACTTATCCCTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
CCAGAATAATCGAACTTATCC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
...................................................CCTACTAAAAACAGAAGCTGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...............................................................AGAAGCTGGCGAGATAAGAAGAGC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	24	20	0.05	1	0	0	0	0	0	1
............AACTTATCCCTGGAAGTGATGGCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	1

droGri2

C--GC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

dsi_9570

node_8654:15945-16094 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads