ID:

dsi_9559

 Coordinate:

3r:17119453-17119602 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-18.2 -18.1 -18.0

Flybase annnotation

exon [3r_17119603_17120144_-]; five_prime_UTR [3r_17119603_17120144_-]; intron [3r_17117395_17119602_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCTGGCCGATGGTTACGTCAATTTCGATTCGCGTTCGAGTTCTTGTGCTGGTAAATAATACTACTACAAAAGTGGCAAAAGCAGCAGCACCTCACCAGCAGTCAAGACAACTTTTGTTTAACACCGCTCAAGGAAACAACGCACACGGACCAAGCATAAAATTAAGCGCGATATAAACTGCAGACCTTATGCCCCACGTCTGTGCCCTTCATCCGGCGTTTACTCCAGACCACCACCACCACAAAAGAGC
**************************************************.......................((((.(((..((((..(((....(((.((..((((((...))))))...)).)))..)))......(((.......................))).........))))....))).)))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.............................................................................................................................................................................TAAACTGCAGACCTTATGCCC........................................................ 21 0 1 1.00 1 1 0 0
...................................................................................................................GTTTAACATCGATCAAGG..................................................................................................................... 18 2 2 0.50 1 1 0 0
.........................GATCCGCGTTCGAGT.................................................................................................................................................................................................................. 15 1 10 0.10 1 0 1 0
....................................................AAATAATAGTACTGCAAAA................................................................................................................................................................................... 19 2 17 0.06 1 0 0 1

Anti-sense strand reads

AGACCGGCTACCAATGCAGTTAAAGCTAAGCGCAAGCTCAAGAACACGACCATTTATTATGATGATGTTTTCACCGTTTTCGTCGTCGTGGAGTGGTCGTCAGTTCTGTTGAAAACAAATTGTGGCGAGTTCCTTTGTTGCGTGTGCCTGGTTCGTATTTTAATTCGCGCTATATTTGACGTCTGGAATACGGGGTGCAGACACGGGAAGTAGGCCGCAAATGAGGTCTGGTGGTGGTGGTGTTTTCTCG
**************************************************.......................((((.(((..((((..(((....(((.((..((((((...))))))...)).)))..)))......(((.......................))).........))))....))).)))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................................................................CGTCTGGAATACGGGGTGCAGA................................................. 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..ACCGGCTACCAATGCAGTT..................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................CAGTTCTGTTGAAAACAAATT................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGTTCAGACACGG............................................ 15 1 9 0.56 5 0 5 0 0 0 0 0 0 0
.....................AAAGCTAAGTCCAAGCTCAAG................................................................................................................................................................................................................ 21 2 2 0.50 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TGGTGGTGGTGTTTT.... 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0
...............................................................................................................................................................................................GGGGTTCAGGCACGGGAA......................................... 18 2 6 0.33 2 0 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CGGGAAGCAGGCCACAAGTG........................... 20 3 3 0.33 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................GGCCGCAAACGAGGTCAGGA.................. 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0
...................................................................................................................................................CTGGTTCGTATGTTAGCTCG................................................................................... 20 3 3 0.33 1 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................TATGGGGTTCAGACACGGGCA......................................... 21 3 4 0.25 1 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................TTCTGGAATACGAGGTGCG................................................... 19 3 15 0.20 3 0 0 0 0 0 0 0 3 0
....................................................................................................................................................................................................................GGTCGTAAACGAGGTCTGGT.................. 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................GGGGTTCAGGCACGGGA.......................................... 17 2 16 0.06 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGGTGGTGGTGGTGT....... 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................CTGGTTCGTACTTTCA....................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................ATAGGGGGTGCTGACCCG............................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.......................AGCTAAGTCCAAGCTCA.................................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................AGGGGGTGCAGCCACG............................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................ATGGGGTTCAGGCACGGGA.......................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
.................................................................................................................................................................................................................................GTCAGGGGGTGATGGTGTT...... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0
.......CTACCACTGCAATTAAA.................................................................................................................................................................................................................................. 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0

Generated: 04/23/2015 at 12:28 PM