dsi_9542

CDS [3r_16248064_16248167_-]; exon [3r_16248064_16248167_-]; intron [3r_16247435_16248063_-]

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GAACACGTTTCCTACAGTCTCCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAACCTAATCGGAATTATCAAAATCGCGAGCAAACAACCAACAATTTGCGTCAAAGTCGCGGTCCAAAGTTCAATGAAAGTGCCGCGTTGTCGTTGCGTCGTCTGTTTCTTTAGCTTATGTGCGTTTTGGACTTTGTCTTAACTTAATTATATGCATTGAGTATAGCCCGACTACGGGGTAAACAAACCAGAGA ****************************************************............((......((((..((((((((((.(((..((.....(((.(((...((((((......(((...)))...))))))))).)))......))..)))..))).))))....))).))))..))***********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M053 female body	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
......................TCAATGAGGCCAAGATCCCAACACC...........................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0
........................................CAACACCTCGGTGAGTAAACC.............................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
.........TCCTACAGTCTCCTCAATG..............................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0
........................................................................................................................................................................AGCTTATGTGCGTTTTGGACT.............................................................	21	0	1	1.00	1	0	1	0	0	0
........TTCCTACAGTCTCCTCAATG..............................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0
......................................................GTAAACCTAATCGGAATTATC...............................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0
....................................................................AATCATCTAAATCGCGACC...................................................................................................................................................................	19	3	14	0.21	3	3	0	0	0	0
.................................................................................................................................................................................................................................GAGTACGGGGTAAAC..........	15	1	6	0.17	1	0	0	0	1	0
...................................................................................................................................................................................................................ATTGAGTATAGGGCGA.......................	16	2	20	0.05	1	0	0	0	0	1
..............................................................................................................................................................CTGTTTCTTTAGCTCTTGGG........................................................................	20	3	20	0.05	1	0	0	0	0	1

CTTGTGCAAAGGATGTCAGAGGAGTTACTCCGGTTCTAGGGTTGTGGAGCCACTCATTTGGATTAGCCTTAATAGTTTTAGCGCTCGTTTGTTGGTTGTTAAACGCAGTTTCAGCGCCAGGTTTCAAGTTACTTTCACGGCGCAACAGCAACGCAGCAGACAAAGAAATCGAATACACGCAAAACCTGAAACAGAATTGAATTAATATACGTAACTCATATCGGGCTGATGCCCCATTTGTTTGGTCTCT ***********************************************************............((......((((..((((((((((.(((..((.....(((.(((...((((((......(((...)))...))))))))).)))......))..)))..))).))))....))).))))..))****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	O001 Testis	SRR618934 dsim w501 ovaries	SRR902008 ovaries
....................................................................................................................CCAGGTTTCAAGTTACTTTCA.................................................................................................................	21	0	1	18.00	18	15	3	0	0	0	0	0	0	0	0	0
.....GCAAAGGATGTCAGAGGAGTT................................................................................................................................................................................................................................	21	0	1	6.00	6	0	4	0	2	0	0	0	0	0	0	0
........................................................................................................GCAGTTTCAGCGCCAGGTTTC.............................................................................................................................	21	0	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0
...................................................................................................................GCCAGGTTTCAAGTTACTTTC..................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
......CAAAGGATGTCAGAGGAGT.................................................................................................................................................................................................................................	19	0	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
....TGCAAAGGATGTCAGAGGAGTT................................................................................................................................................................................................................................	22	0	1	2.00	2	0	1	0	0	1	0	0	0	0	0	0
....TGCAAAGGATGTCAGAGGAGT.................................................................................................................................................................................................................................	21	0	1	2.00	2	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................CAGCGCCAGGTTTCAAGTTAC......................................................................................................................	21	0	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
....TGCGAAGGGTGTCAGAGGAGT.................................................................................................................................................................................................................................	21	2	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.........AGGATGTCAGAGGAGTTACT.............................................................................................................................................................................................................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........GGATGTCAGAGGAGTTACT.............................................................................................................................................................................................................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................CGTTTGTTGGTTGTTAAACGCA...............................................................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................................GTTTGTTGGTTGTTAAACGCA...............................................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........AAGGATGTCAGAGGAGTTAC..............................................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....GGCAAAGGATGTCAGAGGAGTTA...............................................................................................................................................................................................................................	23	1	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................TCGTTTGTTGGTTGTTAAAC..................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TCGGGCTGATGCCCCATTTGTTT.......	23	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................GCCAGGTTTCAAGTTACTTT...................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.............................CCGGTTCTAGGGTTGTGGA..........................................................................................................................................................................................................	19	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
............................TCCGGTTCTAGGGTTGTGGA..........................................................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................AGTTTTACCGCTCGTTT................................................................................................................................................................	17	1	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................TTGGCGCTCGATTGTTGAT..........................................................................................................................................................	19	3	20	0.10	2	0	0	0	0	0	0	0	0	0	1	1
....................................................................................................................CTAGGTTTCAAGATACTTT...................................................................................................................	19	2	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0
.....................................AGGGTTGTGGATCAACT....................................................................................................................................................................................................	17	2	13	0.08	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................CAAGGCGCAACAGCAGC..................................................................................................	17	2	19	0.05	1	0	0	0	0	0	0	0	1	0	0	0
.............................CCGTTGCTAGGGTTATGGAG.........................................................................................................................................................................................................	20	3	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................CTTCATATCGGGCTG......................	15	2	20	0.05	1	0	0	0	0	0	0	1	0	0	0	0
..............................CTGTTCCAGGGTTGTG............................................................................................................................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0

Species	Coordinate	ID	Alignment
droSim2	3r:16247864-16248113 -	dsi_9542	GAACACGTTTCCTACAGTCTCCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAA-C-----------------------------------------CTAATCGG-AATTATCAAAATCG-CG--AGCAAACAACCA-----------ACA-ATTTGCG-TCAAAGT------CGCGGTCCAAAGTTCA-ATGAAAGTGCCGCGTTG-TCGTTGCGTCGTCTGT-TT-CTTTAGCT---TATGTGCGTTTTGGACTTTGTCT-TAACT------------------------------------------TAATTATA--TGCATTGAGTATAGC----CCGACTACGGGGTAAACAAACCAGAGA
droSec2	scaffold_0:17114048-17114290 -		GAACACGTTTCCTACAGTCTCCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAA-C-----------------------------------------CTAATCGG-AATTATCAAAATCG-CG--AGCAAACAACCA-----------ACA-ATTTGCG-TCAAAGT------CGCGGTCCAAAGTTCA-ATGAAAGTGCCGCGTTG-TCGTTGCGTCGTCTGT-TT-CTTT--CT---TATGTGCGTTTTGGACTTTGTCT-TAACT------------------------------------------TAATAATA--TG-----AGTATAGC----CCGACTACGGGGTAAACAAACCAGAGA
dm3	chr3R:4765445-4765694 +		GAACACGTTTCCTACAGTCTGCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAA-C-----------------------------------------CCAATCGG-AATTATCAAAATCG-CG--GGCAAACAACCA-----------ACA-ATTTGCG-TCAAAGT------CGCAGTCCAAAGTTCA-ATGAAAGTGCCGCGTTG-TCGTTGCGTCGTCTGT-TTCCTTTGGCT---TATGTGCGTTTTGGACTTTGCCT-GAACT------------------------------------------TAATAATA--TGCATTGAGTATAGC-----CGACTACGGGGTAAACAAACCAGAGA
droEre2	scaffold_4770:16837966-16838212 -		GAACACGTTTCATACAGTCTCCTTAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAA-C-----------------------------------------CCAATCGG-AATTATCAAAATCG-CG--GGCAAACAACCA-----------ACA-ATTTGCG-TCAAAGT------CGCGGTCCAAAGTTCA-ATAAAAATGCCGCGTTG-TCGTTGCGTCGACTGT-TT-CTTTGGTT---TGTGTTCATTTTGGACTTTGTCT-GAACT------------------------------------------TAATAATT--TGCATTGAGTA--GC-----CGACTACGGGGTAAACAAACCAGAGA
droYak3	3R:8809626-8809878 +		GAACACGTTTCTTACAGTCTCCTGAATGAGGCCAAGATCCCAACACCCCGGTGAGTAAA-C-----------------------------------------CCAATCGA-AATTATCAAAATCG-CG--GGCAAACAAGCC-----------ACC-ATTTGCG-TCAAAGT------CGCGGTCCAAAGTTCA-ATGAAAATGCCGCGTTG-TGGTTGCGTCGACTGT-TT-CTTTGGTTGG-TGTGTTCGTATTGGACTTTGTAT-GAACT------------------------------------------TAATAATT--TGCATTGGCTA--CT-AAATGGACTACGGGGTAAACAAACCAGAAA
droEug1	scf7180000409467:714690-714951 -		GAGCACGTTTCATACAGTCTCCTTAACGAGAGCAAAATTCCAACACCTCGGTAAGTAAA-T---------------------------------AACAAAAACCAACCGG-AATTATCAAAATCGGCG--GTGAAATAAAACCAAAAACAACAACA-ATCTGCC-ACAAAGTT-----TGCCGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-TCTTAGTT---TATTTTCGTCTCGGACTTTGTCT-GAACT------------------------------------------TAATAATT--TGCATTTATTA--GC---------T--GGAGTAAACAAACCATAGA
droBia1	scf7180000302402:7468727-7468959 +		GAGCACGTCTCCTACAGTCTCCTGAACGAGAGCAAGATCCCCACACCTCGGTGAGTAAG-T----------------------CAA-------------A-ACCGACCGG-AATTATCAA--TCG-------------ACCC-----------ACA-ATCAGGC-GCAAAGT------GGCCGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGTTGCGTTGACGGC-TT-CTTCGGTT---TATTTTCGCTTCGGACTTTGTCT-GAACT------------------------------------------TAAT-ATT--TGCATTAATTA--GC---------T--GGGGTAAACAAACCATAGA
droTak1	scf7180000414009:55533-55780 -		GAGCACGTTTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAAA-C----------------------CCA-------------A-ATCAACCGG-AATTATCAAAATCG-CG--AGGAAACAACCA-----------ACA-ATCGGCC-ACAAAGT------TGCCGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-CTTTGGTT---TATTTTCGTTTCGGACTTTGTCTCGAACT------------------------------------------TAATAATT--TGCATTAATTA--GC---------T-CGGGGTAAACAAACCAAAGA
droEle1	scf7180000491212:1035164-1035417 -		GAGCATGTTTCCTATAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTATGAC----------------------CAA-------------AACCCAACCGG-AATTATCAAATTCG-CGTAGGGAAACAACC------------ACA-ATCAGCC-ACAAAGT------TGCGGTCCAAAGTTCA-ATGGAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-CAGTGGTT---TATTTTCGTCTTGGACTTTGGCT-GAACT------------------------------------------TAATAATT--TGCATTAATTA--GC----TAGGCT--GGGGTAAACAAACCATAGA
droRho1	scf7180000779210:36898-37142 -		GAGCATGTTTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAAG-C----------------------CCA-------------A-ACCAACCGG-AATTATCAAAATCG-CA--AGGAAACAACC------------ACA-ATCAGCC-ACAAAGT------TGCGGTCCAAAGTTCA-ATGAAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-CTTCGGTT---TATTTTCGTTTCGGACTTTGGCT-GAACT------------------------------------------TAATAATT--TGCATTAATTA--GC---------T--GGGGTAAACAAACCATAGA
droFic1	scf7180000454106:2424510-2424756 -		GAGCATGTCTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAGA-C----------------------CTT-------------A-ACCAGCCGG-AATTATCAAATTTG-CG--AGGAAACAACCA-----------ACA-ATCAGCC-AC--AGTT-----TGCGGTCCAAAGTTCG-CTGAAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-CTTTGGTT---TATTTTCGTCTCGGACTTTGTCT-GAACT------------------------------------------TAATAATT--TGCATTAATTA--GC---------TGTGGGGTAAACAAACCATAGA
droKik1	scf7180000302639:1800812-1801068 -		GAACATGTTTCCTACACTCTCCTCAACGAAGGCAAAATCCCCACACCGCGGTGAGTAAA-C----------------------CAA-------------T-CCCATTCGGAAATTATCAAAATCG-CG---GAAAACAAC-A-----------ACAAATCGGTTGGCAAAGT------TTCAGTTCAAAGTCCAAACGAAAGTGCCGCGTTGCTCATTGCGTCGACGACGGT-CTTTGGTT---TATTTTTATTTCGGACTTTGTCTGGAAGC------------------------------------------TAACAATT--TGCATTAATTA--CT-----TGGCTGTGGGGTAAACAAACCAAAGA
droAna3	scaffold_13340:3515489-3515730 +		GAACATGTCTCCTACAGTCTCCTCAACGAGAGCAAAATCCCCACACCACGGTAAGCATCAG------------------GAC-AAGAAACTAAAAACAAGAA------GC-TAATATTAAA-TAA-------------ATAC-ACCA-TGGCTTC---CCAGCT-ACAAAGT------TGCAGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGCAGCATTGA--------------TT---CATTTTCAGCTTGGACTTTGGCT-CAACT------------------------------------------TATTAATT--GGTATTAATTA--GC---------T--GGGGTAAACAAACAAAAGA
droBip1	scf7180000396712:837971-838204 -		GAACATGTCTCCTACAGTCTCCTCAACGAAAGCAAAATCCCAACACCACGGTAAGTAAA-T----------------------CAA--------AACAAGAC------CC-TACTATCAT---CA--A--AGGAATCCATCC-ATTAGTAGCCTC---ACAGCT-ACATAGT------TGCAGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGCAGCATTGA--------------TT---CATTTTTATTTTGGACTTTGGAT-GAACT------------------------------------------TATTAGTTGTTGTATTAATTA-------------------GTAAACAAACGAAAGA
dp5	2:22992312-22992541 -	dps_733	GAACATGTCTCGTACACTCTCCTCAACGAAAGTGGAATCCCAACACCGCGGTAAGAATG--------------------GAC-ACT-----------------------------A-----------------------------------------------A-TCAAAGT------ATCGGTCCAAAGTGCA-AAAAACGCGCCGCGTTG-TCGCTG-----ACGC--------------------TTTATATTGGACTTTAGCC-AGAGTAACACTGCACCGATTAGCGATTGGCGTACGAAACGAG-----TCATAATT--TGCATTAATTA--ACTGGCCTGGGTCTGGGGTAAACAAACCAATGA
droPer2	scaffold_3:5769083-5769312 -		GAACATGTCTCGTACACTCTCCTCAACGAAAGTGGAATCCCAACACCGCGGTAAGAATG--------------------GAC-ACT-----------------------------A-----------------------------------------------A-TCAAAGT------ATCGGTCCAAAGTGCA-AACAACGCGCCGCGTTG-TCGCTG-----ACGC--------------------TTTATATTGGACTTTAGCC-AGAGTAACACTGCACCGATTAGCGATTGGCGTACGAAACGAG-----TCATAATT--TGCATTAATTA--ACTGGCCTGGGTCTGGGGTAAACAAACCAATGA
droWil2	scf2_1100000004902:6413944-6414187 +		GAGCATGTCTCGTATACCCTGCTCAATGAAAGTGACATACCAACACCACGGTGAGTATTA--------------------AT--------------------CCAA---------------------------AAACAAGGG-----ACAGGGTCC-CTCTATG-ATGGAGTCTGTGGTCCGGTCCAAAGTCGA-CAAAAAGTGCCGCGTTG-G----------ACTTT-GT-CTTTTGCTGTTTTTTTTTCTTTCCC----------AAACA-TC----------------ATTTGTCTGCGTAGTCAGTCGTCTTATAGTT--CGCATTAATTA--GC------AACT--TTGGTAAACAAATCAGATA
droVir3	scaffold_13047:3176800-3176859 +		GAGCATGTCTCGTACACTCTGCTCAACGAAAGTAGCATCCCAACACCTCGGTAAGTGCA-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6540:20218743-20218798 +		GAACATGTTTCATATACGCTGTTGAACGAAAGTAACATCCCGACGCCTCGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2	scaffold_15074:7550874-7550993 +		GAACACGTCTCATACACCCTGCTCAACGAAAGCAACATCCCAACGCCTCGGTAAGTAAA-TATGTATCTTTATCTATTGTATACAT--------AAC-----------------------------------------------------------------------AAGT------GCCAGTCCAAAGTTCA-ACAAAAGAGGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

GAACACGTTTCCTACAGTCTCCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAA-C-----------------------------------------CTAATCGG-AATTATCAAAATCG-CG--AGCAAACAACCA-----------ACA-ATTTGCG-TCAAAGT------CGCGGTCCAAAGTTCA-ATGAAAGTGCCGCGTTG-TCGTTGCGTCGTCTGT-TT-CTTTAGCT---TATGTGCGTTTTGGACTTTGTCT-TAACT------------------------------------------TAATTATA--TGCATTGAGTATAGC----CCGACTACGGGGTAAACAAACCAGAGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................TCAATGAGGCCAAGATCCCAACACC....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................CAACACCTCGGTGAGTAAA-C-----------------------------------------C............................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........TCCTACAGTCTCCTCAATG.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AGCT---TATGTGCGTTTTGGACT..............................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTCCTACAGTCTCCTCAATG.......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GTAAA-C-----------------------------------------CTAATCGG-AATTATC.............................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GAACACGTTTCCTACAGTCTCCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAA-C-----------------------------------------CTAATCGG-AATTATCAAAATCG-CG--AGCAAACAACCA-----------ACA-ATTTGCG-TCAAAGT------CGCGGTCCAAAGTTCA-ATGAAAGTGCCGCGTTG-TCGTTGCGTCGTCTGT-TT-CTTT--CT---TATGTGCGTTTTGGACTTTGTCT-TAACT------------------------------------------TAATAATA--TG-----AGTATAGC----CCGACTACGGGGTAAACAAACCAGAGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................TCAATGAGGCCAAGATCCCAAC.......................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
.AACACGTTTCCTACAGTCTCC.............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................AAAGTGCCGCGTTG-TCGTTGCG......................................................................................................................................................	22	1	1.00	1	0	0	0	1
.......................................................................................................................................ACAACCA-----------ACA-ATTTGCG-TCAA..........................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
.............................GGCCAAGATCCCAACACCTC..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
....................................................GAGTAAA-C-----------------------------------------CTAATCGG-AATTA...............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
...........................GAGGCCAAGATCCCAACACC....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.........................ATGAGGCCAAGATCCCAACACC....................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0
......................TCAATGAGGCCAAGATCCCAA........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................TCTGT-TT-CTTT--CT---TATGTGCG.......................................................................................................................	21	1	1.00	1	0	0	0	1

dm3

GAACACGTTTCCTACAGTCTGCTCAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAA-C-----------------------------------------CCAATCGG-AATTATCAAAATCG-CG--GGCAAACAACCA-----------ACA-ATTTGCG-TCAAAGT------CGCAGTCCAAAGTTCA-ATGAAAGTGCCGCGTTG-TCGTTGCGTCGTCTGT-TTCCTTTGGCT---TATGTGCGTTTTGGACTTTGCCT-GAACT------------------------------------------TAATAATA--TGCATTGAGTATAGC-----CGACTACGGGGTAAACAAACCAGAGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
............TACAGTCTGCTCAATGAGGCC..................................................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.............ACAGTCTGCTCAATGAGGCCA.................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0
...........CTACAGTCTGCTCAATGAGGC...................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................GAGGCCAAGATCCCAACA......................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGAGGCCAAGATCCCAACA......................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CCAAGATCCCAACACCTCGGT...............................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
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....................................................GAGTAAA-C-----------------------------------------CCAATCGG-AATTA...............................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0
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..................................................................................................................................................................................................................TG-TCGTTGCGTCGTCTGT-TTC..........................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................TTGCGTCGTCTGT-TTCCTTT......................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CTCAATGAGGCCAAGATCCCA.........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GTGCCGCGTTG-TCGTTGCGTCG...................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droEre2

GAACACGTTTCATACAGTCTCCTTAATGAGGCCAAGATCCCAACACCTCGGTGAGTAAA-C-----------------------------------------CCAATCGG-AATTATCAAAATCG-CG--GGCAAACAACCA-----------ACA-ATTTGCG-TCAAAGT------CGCGGTCCAAAGTTCA-ATAAAAATGCCGCGTTG-TCGTTGCGTCGACTGT-TT-CTTTGGTT---TGTGTTCATTTTGGACTTTGTCT-GAACT------------------------------------------TAATAATT--TGCATTGAGTA--GC-----CGACTACGGGGTAAACAAACCAGAGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................GGCCAAGATCCCAACACCTCGT................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	1	0	0
..............................................................................................................................................................................................................GCGTTG-TCGTTGCGTCGACTG...............................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................ACA-ATTTGCG-TCAAAGT------CG...............................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
..........................TGAGGCCAAGATCCCAACACCTCGT................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
......GTTTCATACAGTCTCCTTA..........................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................AAAGTTCA-ATAAAAATGCCGCGTTG-T.............................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
...........................GAGGCCAAGATCCCAACACC....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................AATTATCAAAATCG-CG--GGCAA............................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..........................TGAGGCCAAGATCCCAACACCT...................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............................GCCAAGATCCCAACACCTCG.................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTGGTT---TGTGTTCATTTTGG.................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
................................CAAGATCCCAACACCTCGT................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................TGCG-TCAAAGT------CGCGGTCC.........................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0

droYak3

GAACACGTTTCTTACAGTCTCCTGAATGAGGCCAAGATCCCAACACCCCGGTGAGTAAA-C-----------------------------------------CCAATCGA-AATTATCAAAATCG-CG--GGCAAACAAGCC-----------ACC-ATTTGCG-TCAAAGT------CGCGGTCCAAAGTTCA-ATGAAAATGCCGCGTTG-TGGTTGCGTCGACTGT-TT-CTTTGGTTGG-TGTGTTCGTATTGGACTTTGTAT-GAACT------------------------------------------TAATAATT--TGCATTGGCTA--CT-AAATGGACTACGGGGTAAACAAACCAGAAA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..........................................................................................................................................................................................................................................................................................................................................TGGCTA--CT-AAATGGACTACGGGG...............	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................GGCCAAGATCCCAACACCCCGT................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...CACGTTTCTTACAGTCTC..............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........CTTACAGTCTCCTGAATGA......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.AACACGTTTCTTACAGTCT...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
GAACACGTTTCTTACAGTCTCCTGA..........................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................GCCAAGATCCCAACACCCCGT................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GAGCACGTTTCATACAGTCTCCTTAACGAGAGCAAAATTCCAACACCTCGGTAAGTAAA-T---------------------------------AACAAAAACCAACCGG-AATTATCAAAATCGGCG--GTGAAATAAAACCAAAAACAACAACA-ATCTGCC-ACAAAGTT-----TGCCGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-TCTTAGTT---TATTTTCGTCTCGGACTTTGTCT-GAACT------------------------------------------TAATAATT--TGCATTTATTA--GC---------T--GGAGTAAACAAACCATAGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAGCACGTCTCCTACAGTCTCCTGAACGAGAGCAAGATCCCCACACCTCGGTGAGTAAG-T----------------------CAA-------------A-ACCGACCGG-AATTATCAA--TCG-------------ACCC-----------ACA-ATCAGGC-GCAAAGT------GGCCGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGTTGCGTTGACGGC-TT-CTTCGGTT---TATTTTCGCTTCGGACTTTGTCT-GAACT------------------------------------------TAAT-ATT--TGCATTAATTA--GC---------T--GGGGTAAACAAACCATAGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAGCACGTTTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAAA-C----------------------CCA-------------A-ATCAACCGG-AATTATCAAAATCG-CG--AGGAAACAACCA-----------ACA-ATCGGCC-ACAAAGT------TGCCGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-CTTTGGTT---TATTTTCGTTTCGGACTTTGTCTCGAACT------------------------------------------TAATAATT--TGCATTAATTA--GC---------T-CGGGGTAAACAAACCAAAGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAGCATGTTTCCTATAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTATGAC----------------------CAA-------------AACCCAACCGG-AATTATCAAATTCG-CGTAGGGAAACAACC------------ACA-ATCAGCC-ACAAAGT------TGCGGTCCAAAGTTCA-ATGGAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-CAGTGGTT---TATTTTCGTCTTGGACTTTGGCT-GAACT------------------------------------------TAATAATT--TGCATTAATTA--GC----TAGGCT--GGGGTAAACAAACCATAGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GAGCATGTTTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAAG-C----------------------CCA-------------A-ACCAACCGG-AATTATCAAAATCG-CA--AGGAAACAACC------------ACA-ATCAGCC-ACAAAGT------TGCGGTCCAAAGTTCA-ATGAAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-CTTCGGTT---TATTTTCGTTTCGGACTTTGGCT-GAACT------------------------------------------TAATAATT--TGCATTAATTA--GC---------T--GGGGTAAACAAACCATAGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAGCATGTCTCCTACAGTCTCCTCAACGAGAGCAAAATCCCAACACCTCGGTGAGTAGA-C----------------------CTT-------------A-ACCAGCCGG-AATTATCAAATTTG-CG--AGGAAACAACCA-----------ACA-ATCAGCC-AC--AGTT-----TGCGGTCCAAAGTTCG-CTGAAAGTGCCGCGTTG-TCGTTGCGTCGACGGT-TT-CTTTGGTT---TATTTTCGTCTCGGACTTTGTCT-GAACT------------------------------------------TAATAATT--TGCATTAATTA--GC---------TGTGGGGTAAACAAACCATAGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAACATGTTTCCTACACTCTCCTCAACGAAGGCAAAATCCCCACACCGCGGTGAGTAAA-C----------------------CAA-------------T-CCCATTCGGAAATTATCAAAATCG-CG---GAAAACAAC-A-----------ACAAATCGGTTGGCAAAGT------TTCAGTTCAAAGTCCAAACGAAAGTGCCGCGTTGCTCATTGCGTCGACGACGGT-CTTTGGTT---TATTTTTATTTCGGACTTTGTCTGGAAGC------------------------------------------TAACAATT--TGCATTAATTA--CT-----TGGCTGTGGGGTAAACAAACCAAAGA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GAACATGTCTCCTACAGTCTCCTCAACGAGAGCAAAATCCCCACACCACGGTAAGCATCAG------------------GAC-AAGAAACTAAAAACAAGAA------GC-TAATATTAAA-TAA-------------ATAC-ACCA-TGGCTTC---CCAGCT-ACAAAGT------TGCAGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGCAGCATTGA--------------TT---CATTTTCAGCTTGGACTTTGGCT-CAACT------------------------------------------TATTAATT--GGTATTAATTA--GC---------T--GGGGTAAACAAACAAAAGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................GAGCAAAATCCCCACACCAC..................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	1	0	0	0	0
............TACAGTCTCCTCAACGAGAGCAA................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	2
.............ACAGTCTCCTCAACGAGAGCAA................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
........CTCCTACAGTCTCCTCAA.........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.AACATGTCTCCTACAGTCTCCTCAAC........................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............ACAGTCTCCTCAACGAGAGCAAA...............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.AACATGTCTCCTACAGTCTCCTCAACG.......................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
..ACATGTCTCCTACAGTCTCCTCAACG.......................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................AGAGCAAAATCCCCACACCACGA................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................GTTCA-ACGAAAGTGCCGCGTTG-TCGCAGC.......................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................GC---------T--GGGGTAAACAAACAAAAG.	21	1	1.00	1	0	0	0	0	0	1
GAACATGTCTCCTACAGTCTCCTCAAC........................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0

droBip1

GAACATGTCTCCTACAGTCTCCTCAACGAAAGCAAAATCCCAACACCACGGTAAGTAAA-T----------------------CAA--------AACAAGAC------CC-TACTATCAT---CA--A--AGGAATCCATCC-ATTAGTAGCCTC---ACAGCT-ACATAGT------TGCAGTCCAAAGTTCA-ACGAAAGTGCCGCGTTG-TCGCAGCATTGA--------------TT---CATTTTTATTTTGGACTTTGGAT-GAACT------------------------------------------TATTAGTTGTTGTATTAATTA-------------------GTAAACAAACGAAAGA	Size	Hit Count	Total Norm	Total
No Reads

dp5

GAACATGTCTCGTACACTCTCCTCAACGAAAGTGGAATCCCAACACCGCGGTAAGAATG--------------------GAC-ACT-----------------------------A-----------------------------------------------A-TCAAAGT------ATCGGTCCAAAGTGCA-AAAAACGCGCCGCGTTG-TCGCTG-----ACGC--------------------TTTATATTGGACTTTAGCC-AGAGTAACACTGCACCGATTAGCGATTGGCGTACGAAACGAG-----TCATAATT--TGCATTAATTA--ACTGGCCTGGGTCTGGGGTAAACAAACCAATGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......GTCTCGTACACTCTCCTCAACG.......................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	3	0
.AACATGTCTCGTACACTCTCC.............................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
......................TCAACGAAAGTGGAATCCCAA........................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0	0	0	0	0
........CTCGTACACTCTCCTCAACGA......................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CGC--------------------TTTATATTGGACTTTAGC.........................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................CTCTCCTCAACGAAAGTGGAATCCC..........................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	1	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................GCACCGATTAGCGATTGGCGT.......................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATTA--ACTGGCCTGGGTCTGGG................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.................................................................................C-ACT-----------------------------A-----------------------------------------------A-TCAAAGT------ATCGGTCC.........................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
................................TGGAATCCCAACACCGCGGTA..............................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..ACATGTCTCGTACACTCTCC.............................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.....TGTCTCGTACACTCTCCTCA..........................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
........CTCGTACACTCTCCTCAACG.......................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................ATATTGGACTTTAGCC-AGAGT..................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................ACCGATTAGCGATTGGCGTAC.....................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................GTGGAATCCCAACACCGCGC................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......GTCTCGTACACTCTCCTCAACGAAA....................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................CGAAACGAG-----TCATAATT--TGCA..........................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............ACACTCTCCTCAACGAAAGTGG................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................TCCAAAGTGCA-AAAAACGCGC......................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................CAAAGTGCA-AAAAACGCGCC.....................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CACTGCACCGATTAGCGATTG...........................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................AGCC-AGAGTAACACTGCACC.......................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATTAGCGATTGGCGTACGAAA.................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TAGCC-AGAGTAACACTGCACCG......................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GACTTTAGCC-AGAGTAACACT............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................C-ACT-----------------------------A-----------------------------------------------A-TCAAAGT------ATCGGTC..........................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..ACATGTCTCGTACACTCTCCT............................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TGCATTAATTA--ACTGGCCTGG.......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................GATTAGCGATTGGCGTACGA...................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..............................AGTGGAATCCCAACACCGCGG................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................AAAGTGGAATCCCAACACCGC..................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................TA--ACTGGCCTGGGTCTGGG................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................GAAAGTGGAATCCCAACACC....................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................ATCGGTCCAAAGTGCA-AAAA............................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................CCTCAACGAAAGTGGAATCCC..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TTAGCGATTGGCGTACGAAA.................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AACGCGCCGCGTTG-TCGCTG-----...................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....TGTCTCGTACACTCTCCTCAACG.......................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................GCA-AAAAACGCGCCGCGTTG-T.............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............ACTCTCCTCAACGAAAGTGGAATC............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................T-----------------------------A-----------------------------------------------A-TCAAAGT------ATCGGTCCAAA......................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................AGCGATTGGCGTACGAAACGA..............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................TCTCCTCAACGAAAGTGGAATCCCAAC.......................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CGATTGGCGTACGAAACGAG-----T.......................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................TTATATTGGACTTTAGCC-AGA....................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....ATGTCTCGTACACTCTCCTC...........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................G-TCGCTG-----ACGC--------------------TTTATATTGG.................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................CGAAAGTGGAATCCCAACACC....................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................TCAACGAAAGTGGAATCCCA.........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................TCAAAGT------ATCGGTCCAAAGTG...................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AAACGCGCCGCGTTG-TCGCTG-----...................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TAGCGATTGGCGTACGAAACG...............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................ATTAGCGATTGGCGTACGA...................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............TACACTCTCCTCAACGAAAG...................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CTCTCCTCAACGAAAGTGGAATCC...........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................TAATTA--ACTGGCCTGGGTCT...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................CACCGCGGTAAGAATG--------------------GAC-AC..............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CTCTCCTCAACGAAAGTGGAATC............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................TCGCTG-----ACGC--------------------TTTATATTGG.................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................TTAGCGATTGGCGTACGA...................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................GTAACACTGCACCGATTAGCG...............................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................ATT--TGCATTAATTA--ACTGGCC..........................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................AAAGTGGAATCCCAACACC....................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0

droPer2

GAACATGTCTCGTACACTCTCCTCAACGAAAGTGGAATCCCAACACCGCGGTAAGAATG--------------------GAC-ACT-----------------------------A-----------------------------------------------A-TCAAAGT------ATCGGTCCAAAGTGCA-AACAACGCGCCGCGTTG-TCGCTG-----ACGC--------------------TTTATATTGGACTTTAGCC-AGAGTAACACTGCACCGATTAGCGATTGGCGTACGAAACGAG-----TCATAATT--TGCATTAATTA--ACTGGCCTGGGTCTGGGGTAAACAAACCAATGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....ATGTCTCGTACACTCTCCT............................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0
.AACATGTCTCGTACACTCTCCT............................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
...........GTACACTCTCCTCAACGAAA....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................TTATATTGGACTTTAGCC-AGA....................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................TAGCGATTGGCGTACGAAACG...............................................................	21	1	1.00	1	0	0	0	0	1	0
........CTCGTACACTCTCCTCAACGA......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............................GTGGAATCCCAACACCGCGC................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
................CTCTCCTCAACGAAAGTGGAAT.............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
GAACATGTCTCGTACACT.................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
....ATGTCTCGTACACTCTCCTCAA.........................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droWil2

GAGCATGTCTCGTATACCCTGCTCAATGAAAGTGACATACCAACACCACGGTGAGTATTA--------------------AT--------------------CCAA---------------------------AAACAAGGG-----ACAGGGTCC-CTCTATG-ATGGAGTCTGTGGTCCGGTCCAAAGTCGA-CAAAAAGTGCCGCGTTG-G----------ACTTT-GT-CTTTTGCTGTTTTTTTTTCTTTCCC----------AAACA-TC----------------ATTTGTCTGCGTAGTCAGTCGTCTTATAGTT--CGCATTAATTA--GC------AACT--TTGGTAAACAAATCAGATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................ATG-ATGGAGTCTGTGGTCCGG............................................................................................................................................................................................	21	1	3.00	3	0	2	0	0	1
...............ACCCTGCTCAATGAAAGTGAC...............................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
...........GTATACCCTGCTCAATGAAAGTGAC...............................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0
........................................................................................................AA---------------------------AAACAAGGG-----ACAGGGTCC-C.....................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................AAAAAGTGCCGCGTTG-G----------ACTT...............................................................................................................................................	21	1	1.00	1	1	0	0	0	0
...................................................................................................................................................................................................CAAAAAGTGCCGCGTTG-G----------ACC................................................................................................................................................	21	1	1.00	1	1	0	0	0	0
...................TGCTCAATGAAAGTGACATACCAACACC....................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
.............ATACCCTGCTCAATGAAAGT..................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..............................AGTGACATACCAACACCA...................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
..........................TGAAAGTGACATACCAACACCACG.................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
.AGCATGTCTCGTATACCCT...............................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................CAAAGTCGA-CAAAAAGTGCC.....................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0

droVir3

GAGCATGTCTCGTACACTCTGCTCAACGAAAGTAGCATCCCAACACCTCGGTAAGTGCA-C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................TCTGCTCAACGAAAGTAGCA..............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....TGTCTCGTACACTCTGCTCA..........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAGTAGCATCCCAACACCT...................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GAAAGTAGCATCCCAACACCTCG.................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......GTCTCGTACACTCTGCTCAACGAA.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCTGCTCAACGAAAGTAGCA..............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCTGCTCAACGAAAGTAGCATC............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TCTGCTCAACGAAAGTAGC...............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................CTGCTCAACGAAAGTAGCATCCC..........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CAACGAAAGTAGCATCCCAACACCT...................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGTACACTCTGCTCAACGAA.....................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CTCTGCTCAACGAAAGTAGC...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCTCAACGAAAGTAGCATCCCAACA......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCTCAACGAAAGTAGCATCCC..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CACTCTGCTCAACGAAAGTAGC...............................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GAACATGTTTCATATACGCTGTTGAACGAAAGTAACATCCCGACGCCTCGGTAAGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................CGCTGTTGAACGAAAGTAAC...............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
......GTTTCATATACGCTGTTGAACG.......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........TTCATATACGCTGTTGAACGAAA....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........TTCATATACGCTGTTGAACGAAAGT..................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
....................GTTGAACGAAAGTAACATCCCGACG......................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droGri2

GAACACGTCTCATACACCCTGCTCAACGAAAGCAACATCCCAACGCCTCGGTAAGTAAA-TATGTATCTTTATCTATTGTATACAT--------AAC-----------------------------------------------------------------------AAGT------GCCAGTCCAAAGTTCA-ACAAAAGAGGCG--------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

-23.9	-23.4	-23.3	-23.2

dsi_9542

3r:16247914-16248063 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads