ID:

dsi_9533

 Coordinate:

3r:17117395-17117544 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.3 -16.7 -16.7

Flybase annnotation

five_prime_UTR [3r_17117373_17117394_-]; CDS [3r_17117163_17117372_-]; exon [3r_17117163_17117394_-]; intron [3r_17117395_17119602_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CAATCAAGAGTTATCTAGTCACTTGAATAAATTATTGTGGAATAGATCTGCCTTATTACCAAGACGTATATATTGGATACCATTTATTGAAAAATTGCGAATTTAAAAGAGCTCGGAATAGGTTGTGTTTGTTTCAATCAAAAAATGTAATCGATATAAAGTTTCAAAATATATTATATTTCTATTATAATCCTCCATAGATCTAACCTTGAATGCTGAGCGATGAGGTCGTGGCCTGGCCTTTTCTGGC
**************************************************...........((((...((((((((.(((.((((.((((......((((((......((.((......)).))..)))))).....)))).))))))).))))))))..))))........((((((.......)))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M024
male body		 O002
Head
 M023
head
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.................................................................................................................................................................................................................................AGGTCGTTGCCGGGCCT........ 17 2 7 1.57 11 11 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GGTCGTTGCCTGGCCT........ 16 1 1 1.00 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................AACCTTGAATGCTGAGCGAT.......................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................ATTATATTTCTATTATAA............................................................ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
........................................................................................................AAAAGAACTCTGAATAGG................................................................................................................................ 18 2 18 0.83 15 0 5 0 3 7 0 0 0 0
.............................................................................................................................................................................................................................GAGTAGGTCGTTGCCTGGCCT........ 21 3 4 0.50 2 2 0 0 0 0 0 0 0 0
.....................................................................................................TTTAAAAGAACTCTGAATAG................................................................................................................................. 20 2 3 0.33 1 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................GATTAGGTCGTTGCCGGGCCT........ 21 3 3 0.33 1 1 0 0 0 0 0 0 0 0
......................................................................................................TTAAAAGAACTCTGAATAGATT.............................................................................................................................. 22 3 4 0.25 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................AGTAGGTCGTTGCCTGGCCT........ 20 3 4 0.25 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................GTCGTTGCCTGGCCT........ 15 1 8 0.25 2 2 0 0 0 0 0 0 0 0
.....................................................................................................TTTAAAAGAACTCTGAATA.................................................................................................................................. 19 2 5 0.20 1 0 0 0 1 0 0 0 0 0
...............................................................................................TGCGGATTTAAAAGATCTCC....................................................................................................................................... 20 3 10 0.10 1 0 0 0 1 0 0 0 0 0
........................................................................................................AAAAGAGCTCTGAGTAGGGT.............................................................................................................................. 20 3 11 0.09 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TTAGGTCGTTGCCGGGCCT........ 19 3 12 0.08 1 1 0 0 0 0 0 0 0 0
.....................................................................................................TTTAAAAGAACTCTGAAT................................................................................................................................... 18 2 15 0.07 1 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................................................................................GTAGGTCGTTGCCTGGCCT........ 19 3 17 0.06 1 1 0 0 0 0 0 0 0 0
..................................................................................................................GGAATGGGTTGTGTTTTT...................................................................................................................... 18 2 19 0.05 1 0 0 0 0 0 0 0 0 1
......................................................................................................TAAAAAGAACTCTGAATAGG................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

GTTAGTTCTCAATAGATCAGTGAACTTATTTAATAACACCTTATCTAGACGGAATAATGGTTCTGCATATATAACCTATGGTAAATAACTTTTTAACGCTTAAATTTTCTCGAGCCTTATCCAACACAAACAAAGTTAGTTTTTTACATTAGCTATATTTCAAAGTTTTATATAATATAAAGATAATATTAGGAGGTATCTAGATTGGAACTTACGACTCGCTACTCCAGCACCGGACCGGAAAAGACCG
**************************************************...........((((...((((((((.(((.((((.((((......((((((......((.((......)).))..)))))).....)))).))))))).))))))))..))))........((((((.......)))))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
........................................................ATGATTCTGCATATA................................................................................................................................................................................... 15 1 6 0.17 1 1
...............................................................................................................................AAAAAAAGTTAGTTTTT.......................................................................................................... 17 1 20 0.05 1 1

Generated: 04/23/2015 at 12:26 PM