ID:

dsi_9526

Coordinate:

3l:7649687-7649836 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

Sense Strand Reads

ACAATTCCAGGTGCAACAATTGTGGAAGCAACACGCCAACTACTTGAACGGTATGGATCAGCATTTATTAACTAGAAACAACAAATACAACGATGTTATGGGAAATAACGGTTTAGCAAATGCATACATATTTAACAGATAGCTATTATATTTATATATAAAAATAATATATTAATAAAATAACTATTATTTGGGTTGGAAAAGTGGTTTCCTTTAAAACCAGAAATGATATAATATATAATTTTCTTGA ************************************************(((((.((..(((((((((..(((..((((.............)))).)))..)))))..))...))..)).)))))..((((((..(((((.((((.((((.((((((.......)))))).)))).)))).)))))..))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	M053 female body	SRR618934 dsim w501 ovaries
........................................................................................................................................GGATAGCTATTATATTTACATGT...........................................................................................	23	3	1	1.00	1	1	0	0	0
...............................................................................................................................................TAGGATAGTTATATATAAAAATAATA.................................................................................	26	3	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................ATTATTTGGGTTGGAAAAGT.............................................	20	0	1	1.00	1	0	0	1	0
...................................................................................................................................TTAACAGTTGGCTATAATATT..................................................................................................	21	3	8	0.13	1	0	1	0	0
........................................................................................................................................................................................................TAAGTGGTATCCTTTAAA................................	18	2	10	0.10	1	1	0	0	0
...............AAAATTGTGGAAGCGACACC.......................................................................................................................................................................................................................	20	3	12	0.08	1	1	0	0	0
..................ATTATGGAAGCAACAAGC......................................................................................................................................................................................................................	18	2	16	0.06	1	0	0	0	1
............................................TGAAAGGTATGGATCATGA...........................................................................................................................................................................................	19	3	20	0.05	1	0	1	0	0

Anti-sense strand reads

TGTTAAGGTCCACGTTGTTAACACCTTCGTTGTGCGGTTGATGAACTTGCCATACCTAGTCGTAAATAATTGATCTTTGTTGTTTATGTTGCTACAATACCCTTTATTGCCAAATCGTTTACGTATGTATAAATTGTCTATCGATAATATAAATATATATTTTTATTATATAATTATTTTATTGATAATAAACCCAACCTTTTCACCAAAGGAAATTTTGGTCTTTACTATATTATATATTAAAAGAACT ************************************************(((((.((..(((((((((..(((..((((.............)))).)))..)))))..))...))..)).)))))..((((((..(((((.((((.((((.((((((.......)))))).)))).)))).)))))..))))))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	O001 Testis	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries
...........................CGTTGATCGGTAGATGAACTT..........................................................................................................................................................................................................	21	3	1	2.00	2	2	0	0	0	0	0
.....................................................................................................CTAGATTGCCAAATCGTT...................................................................................................................................	18	2	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................GATAATATAAATATATAT..........................................................................................	18	0	3	0.67	2	0	0	0	2	0	0
..................................................................................................................................................................................................................GGAAATTTTGGTCTCT........................	16	1	2	0.50	1	0	0	1	0	0	0
.........................................................................................................ATTGCCAAATCGTTTG.................................................................................................................................	16	1	2	0.50	1	1	0	0	0	0	0
...............................................................................................AATATCCTTTGTTGTCAAATC......................................................................................................................................	21	3	4	0.25	1	0	0	1	0	0	0
......................ACCTTCGTTGTGCTG.....................................................................................................................................................................................................................	15	1	5	0.20	1	0	0	0	0	0	1
.............................................................................................................................TGTAGAAATGGACTATCGAT.........................................................................................................	20	3	5	0.20	1	0	0	0	0	1	0
..........................TCGTTGTGCGTTTGAT................................................................................................................................................................................................................	16	1	13	0.08	1	0	0	0	0	1	0
................................................................................................................AATCGTTTGCGTAAGTAT........................................................................................................................	18	2	13	0.08	1	0	1	0	0	0	0

Generated: 04/24/2015 at 10:26 AM