ID:

dsi_9516

Coordinate:

3r:17116822-17116971 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_17115970_17116821_-]; exon [3r_17115734_17116821_-]; intron [3r_17116822_17117162_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTGTTATCACTCAAAACTATTTTTAGTTGTAATTATATTATTCACTTCCGCACGTTTGTCATTAGAATGGACGCTTATTATATTTATTTGATCAGATTTAGGAAAACGATCATTACAAACGATTATTCAAGTATGTCACTTGATATTTATTACCTGATAATTGAGCTTAATACCCATTAATAAATGATTTTTTCTTTCAGAACCTAAGTGGCCTGGCGGAGAGTCATGAAGACACCACACCAGGGATATT ************************************************.....(((.....(((..(((((.((((((....((((...((((..(((((......((((..(((.((..........)).)))....))))........)))))...))))....)))).....)))))).)).)))..)))..)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis
...............................................................................................................................................................................................................................TCATGAAGACACCACACC.........	18	0	1	2.00	2	2	0	0	0
................................................................................................................................................................................TAAATAAATGATTTTTTC........................................................	18	1	7	0.14	1	0	0	1	0
...........................................................................................................................................................................................................................AGAATGATGAAGACACCA.............	18	2	7	0.14	1	0	1	0	0
.....................................TTATACTCTTCGGCACGTTT.................................................................................................................................................................................................	20	3	8	0.13	1	0	0	0	1
...................................................................................................AGGAATACGATCATTCC......................................................................................................................................	17	2	19	0.05	1	0	1	0	0
...........................................................................TATTATATTTATGTGA...............................................................................................................................................................	16	1	20	0.05	1	0	0	1	0

Anti-sense strand reads

GACAATAGTGAGTTTTGATAAAAATCAACATTAATATAATAAGTGAAGGCGTGCAAACAGTAATCTTACCTGCGAATAATATAAATAAACTAGTCTAAATCCTTTTGCTAGTAATGTTTGCTAATAAGTTCATACAGTGAACTATAAATAATGGACTATTAACTCGAATTATGGGTAATTATTTACTAAAAAAGAAAGTCTTGGATTCACCGGACCGCCTCTCAGTACTTCTGTGGTGTGGTCCCTATAA ************************************************.....(((.....(((..(((((.((((((....((((...((((..(((((......((((..(((.((..........)).)))....))))........)))))...))))....)))).....)))))).)).)))..)))..)))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries
..............................................................ATCTTACCTGCGAGTA............................................................................................................................................................................	16	1	2	0.50	1	1	0	0
.........................................AGTGAAGGGGTGCAA..................................................................................................................................................................................................	15	1	12	0.08	1	1	0	0
...............................................................................................................................................................................................................CACCGGGCCGCCTCT............................	15	1	12	0.08	1	1	0	0
............................................................AAATCTCACCTGCGAAT.............................................................................................................................................................................	17	2	16	0.06	1	0	1	0
...............................................................................................................................................................................................AATAAAGTCTTGGAT............................................	15	1	18	0.06	1	0	0	1

Generated: 04/23/2015 at 12:18 PM