dsi_9503

exon [3r_16246598_16246600_-]; CDS [3r_16246598_16246600_-]; intron [3r_16246601_16246724_-]; exon [3r_16246082_16246506_-]; CDS [3r_16246082_16246506_-]; intron [3r_16246507_16246597_-]

-----------------------------------------------###-------------------------------------------------------------------------------------------################################################## ACTCATTTGTGAATGTCATTGAACTGGATTTCATGTTTTCTATCCAGGCTGTAAGTATATTTCACCAAAAATAACACTTTCCACCCATTAAACTATGTTTAAACCTAATGATTTGTAACAACTTTTAATGCTTATCCGTAGTCTTCGCATTGGATGCTAAGCTGCGATTCGATGACAACGCCGAGTTTCGT ************************************************...................................(((((((...((((((((........)))).))))...)))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M025 embryo	M053 female body	SRR902009 testis	SRR553488 RT_0-2 hours eggs	M023 head	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
....................................................................................................................................................ATTGGATGCTAAGCTGCGATT......................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGCTAAGCTGCGATTCGATGACAA.............	24	0	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................GATGACAACGCCGAGTTT...	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................CAACTTTTAATGCTTATCCGTAGTCTTCG............................................	29	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TAAGGAGTTGTAACAACT....................................................................	18	2	6	0.33	2	1	0	0	0	0	1	0	0	0	0	0
................CATTGAACTGGATTATACGTTT.........................................................................................................................................................	22	3	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................TAAGGATGTGTAACAACT....................................................................	18	2	7	0.29	2	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................CTTTACCGTAGTCTTCGTA..........................................	19	3	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................CTAAGGAGTTGTAACAAC.....................................................................	18	2	7	0.14	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................TGTGACAATTTTTAATGCTGA.........................................................	21	3	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................................................................GCTAAGGTGCGATACGA...................	17	2	13	0.08	1	0	0	0	0	0	0	0	0	1	0	0
...................................................................................................................................................CAATGGATGCTCAGCGGCG.........................	19	3	16	0.06	1	0	0	0	0	0	0	0	0	0	1	0
............................................................................................................................................................CTAAGCTGCGACCCGATGG................	19	3	17	0.06	1	0	0	0	0	0	0	0	0	0	0	1

TGAGTAAACACTTACAGTAACTTGACCTAAAGTACAAAAGATAGGTCCGACATTCATATAAAGTGGTTTTTATTGTGAAAGGTGGGTAATTTGATACAAATTTGGATTACTAAACATTGTTGAAAATTACGAATAGGCATCAGAAGCGTAACCTACGATTCGACGCTAAGCTACTGTTGCGGCTCAAAGCA ************************************************...................................(((((((...((((((((........)))).))))...)))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	M024 male body	O001 Testis	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M053 female body	SRR553487 NRT_0-2 hours eggs
..............................................................................................................................TTACGAATGGGCATCAGAAGC............................................	21	1	1	1.00	1	0	0	0	1	0	0	0	0
..............................................................................................................................................................TTCGACGCTAAGCTACTGTT.............	20	0	1	1.00	1	0	1	0	0	0	0	0	0
........................................................................................................................................................CTACGATTCGACGCTAAGCTA..................	21	0	1	1.00	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................ACGATTCGACGCTAAGCT...................	18	0	1	1.00	1	0	0	1	0	0	0	0	0
..................................CAAAAGATAGGGCTGACATTTAT......................................................................................................................................	23	3	2	0.50	1	1	0	0	0	0	0	0	0
..................................CAAAAGATAGGGCTGACATTTA.......................................................................................................................................	22	3	3	0.33	1	1	0	0	0	0	0	0	0
......................................................................................................................................AGGCATCAGAATGGTA.........................................	16	2	19	0.11	2	0	0	0	0	2	0	0	0
..........................................AGCTCCGGCATTCATA.....................................................................................................................................	16	2	20	0.10	2	0	0	0	0	2	0	0	0
..........CTTTCTGTAACTTGACCT...................................................................................................................................................................	18	2	15	0.07	1	0	0	0	0	0	1	0	0
............................................................................GTAAGACGGGTAATTTGATA...............................................................................................	20	3	17	0.06	1	0	1	0	0	0	0	0	0
......................TGACCGAAAGTACAAACG.......................................................................................................................................................	18	2	19	0.05	1	0	0	0	0	0	0	1	0
................................................................................................................ACCACTGTTGAAAATTA..............................................................	17	2	20	0.05	1	0	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3r:16246457-16246647 -	dsi_9503	ACTC--ATTTGTG-------AATGTCA-TTGAA-CTGGATTTCATGTT-TTCTATCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----AA----AAATA---------------------------------------------------------------------------------------------------------------------------------ACACTT-----------------------------------------------------------TCCACCC-----------ATTAAACTATGTTTAAA----CC-----TA-----------------------ATGAT-T-TGTAA-------------CAACTTTTAATGCTTATCCGTAGTCTTCGCATTGGATGCTAAGCTGCGATTCGATGACAACGCCGAGTTTCGT
droSec2	scaffold_0:17112574-17112764 -		ACTC--ATTTGTG-------TATGTCA-TTGTA-CTGGATTTCATGTT-TTCTGTCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----AA----TAATA---------------------------------------------------------------------------------------------------------------------------------ACCCTT-----------------------------------------------------------ACCATCC-----------ATTAAACTATGTTTAAG----CC-----TA-----------------------ATGAT-T-TGTAA-------------CAACTTTAAATGCTTACCCGTAGTCTTCGCATTGGATGCTAAGCTGCGATTCGATGACAACGCCGAGTTTCGT
dm3	chr3R:4766989-4767179 +		ACTC--ATTTGTG-------ATTGTCA-TTGTA-CTGGATTTGATGTT-TTCTGTCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----AA----TAATA---------------------------------------------------------------------------------------------------------------------------------ACCCTT-----------------------------------------------------------TCCATTC-----------ATTAACCTATGTTTAAA----CC-----TA-----------------------ATGAT-T-TGTAA-------------CAACTTTCAATGATTACCTGTAGTCTTCGCATTGGATGCTAAGCTGCGATTTGATGACAACGCCGAGTTTCGT
droEre2	scaffold_4770:16836489-16836696 -		ACTC--ATTTGTG-------AATGTCA-TTGTA-CTGGATTTCATGTT-TTCTGTCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----AA----TATCA------------AGCTTATTAA---------------C-----CCTGC-------------------------------------------------------------------------------------TG-----------------------------------------------------------CTCATTT-----------ATTAAACTATGTTTAAA----CTTTCCTCA-----------------------ATAAT-T-TTAAA-------------CCATTTTAATTGCTTTTCCGCAGTCTTCGCATTGGACGCCAAGCTGCGTTTCGATGACAATGCCGAGTTCCGT
droYak3	3R:8811201-8811406 +		ACTC--ATTTGTG-------AATGTCA-TTGTA-CTGGATTTCATGTT-TTCTGTCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----CA----TGTCA------------AGCTTATTAA---------------CAAATTCCCAT-------------------------------------------------------------------------------------TT-----------------------------------------------------------CTCATTC-----------ATTAAACTATGTTTAAA----CCATCTTTG-----------------------ATGAT-T-ATAAA--------------------CAATGCTTTTCCGTAGTCTTCGCATTGGATGCCAAGCTGCGTTTCGATGACAACGCCGAGTTCCGT
droEug1	scf7180000409467:713237-713429 -		ACCC--ATTTGTG-------AATGTCA-TTAAT-CTGGATTTCGTGTT-TTCTGTCCAGGCTGTAAGTATGCATTAC-----------------------------------------T----AACAAATCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTT----ATTTCTTAAAAACCAATGCTTATA----CTTTCTTTA-----------------------ATAAT-T-T--------------------CTATTTAAAATTATTCATAGTCTTCGCATTGGACGCCAAGCTGCGTTTCGATGACAATGCCGAGTTCCGG
droBia1	scf7180000302402:7470301-7470498 +		ACCC--ATTTGTG-------AATGTCA-TTATG-CTGGATTTCATGTT-GTCTGTCCAGGCTGTAAGTATTTATCAC-----------------------------------------C----TACTAA---CA------------AGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGATTCATTATATTTTAATAAAAATATACTTAAT----CC-------------------------------TGAT-T-TTTAA-------------TTACTTAACATGCTTTTCCCTAGACTTTGCATTGGACGCCAAGCTGCGTTTCGACGACAACGCCGAGTTCCGG
droTak1	scf7180000414009:53183-53276 -		AAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAA----CC-------------------------------AGAT-C-TTTAA-------------TCATTTTAAATGCTTCTCCTTAGTCTTTGCACTGGACGCCAAGCTGCGTTTCGATGACAACGCCGAGTTCCGT
droEle1	scf7180000491212:1033486-1033797 -		ACCC--ATTTGTG-------AATGTCA-------CTGGATTTCATGTCTTTCTGTCCAGGCTGTAAGTATATATCAC-----------------------------------------C----CACTAA---CA---------TTTAGTTTG----GAAATATTATTGGTGCAGGATTTACAAAGATTAATAATT---------------------------------CCAT---TTTTAATCTTCAGATATGTTTCCA--TAAACATAAATTCATTTGACAGCAATCGAATTTTTGTGCTAAATAA-----GCTATATAATTAATTTC---------------------------ACTTTAATTCACC-TATTTA-----------------------ATGTT-T-TTTAA-------------TCATTTAAAATGCTTTACCGCAGATTTCGCATTGGACGCCAAGCTGCGCTTCGACGACAATGCTGAGTTCCGC
droRho1	scf7180000779210:35271-35573 -		ACCC--ATTTGTG-------AATGTCA-------CTGGATTTCATGTT-TTCTGCCCAGGCTGTAAGTATATGTCAT-----------------------------------------C----AACTAA---CAACGAGTGCATATAGCTTA----GAAATATGATTGGTGCAGGGTTTAT---GTTCAATAATA---------------------------------CTAT---T-TTAATTATCAAAC-TGATTAAAACTAAACATATAATCCTTAAACAGCCATCGTACTT---CGCTAAATAA-----TCCATATCAATAAGTTC---------------------------ACCTTAA----CC-------------------------------TATT-A-TTAAA-------------ACATTTAAAATGCGTTTTTGTAGACTTCGCATTGGACGCCAAGCTGCGTTTCGACGACAACGCTGAGTTCCGT
droFic1	scf7180000454106:2423127-2423321 -		ACCC--ATTTGTG-------TATGTCA-TACTT-CTGGATTTCATGTA-ATCT-TTTAGGCTGTAAGTATATAAA---------------------A----------------------GACCAA----GCAAA---------------------------------------------------------------------------------------------------------------------------------TCATTG-----------------------------------------------------------TACTCTA-----------ATAAACCCATGTTAATC----CT-----TGAAT--------------------ATGCA-T-CTAAA-------------TAATATTTCTTGCCTTTCTGCAGTCTTTGCATTGGACGCCAAGCTCCGATTCGACGACAACGCCGAGTTCCGT
droKik1	scf7180000302639:1799356-1799537 -		ACTC--ATTTGTA-------AATGTCA-TAATG-GTGGATTTTGTG----TCTGTCCAGGCTGTAAGTATATGTATATGTATATG-----------------------------------------------TA---------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------TTCCC-----------GTAAAA-CTCTTAGT--------------TAAACA------------------ACAT--TTTAATA-------------TGACTTAAATTACCTTCTTGTAGTCTTCGCATTGGACGCCAAACTGCGCTTTGATGACAACGCCGAGTTCCGT
droAna3	scaffold_13340:3516996-3517164 +		ACTC--ATTTGTG-------CTTGTCC-TAACC-CGGGGTG-----TGTTTCTGTCTAGGCTGTAAGTATTCATTTT-----------------------------------------C----CAGAAA--------------------------------------------------------------------------CTATT-----------------CATCCAAGAAT-TAAA-----------------------------------------------------------------------------------------------------------------------------------------TAAATATA---------------------------------------TTAATTTTAATGGATTTTTGTAGTCTTTGCTTTGGACGCTAAGCTGCGATTCGACGACAACGCCGAGTTCCGT
droBip1	scf7180000396712:836613-836793 -		ACTCTCATTTGTG-------CTTGTTCCTAATC-CTGGGTGTTTG----GTCTGTCTAGGCTGTAAGTATGCGTTGTTC---------------------------------------T----AA----AACCA---------------------------------------------------------------------------------------------------------------------------------ATCC--------------------------------------------------------------------------------TTAGAGCTTGTTTT--------------GAAT--------------------AAGTATT-TTTAA-------------TAAT-TTTGATGGATTTTTATAGTCTTTGCTTTGGACGCTAAGCTGCGATTCGACGACAATGCCGAGTTCCGT
dp5	2:22990879-22991084 -		ACCC--ATTCCCA-------ACTGTAA-AAAACCATGGATTTCATATTTTTCTGTCCAGGCTGTGAGTATGCATG---------------------A----------------------AA----------------------------------------------------------------------------------CCGTT-----------------ATTCCATCAAT-TAAG-----------------------------------------------------------------------------------------------------------------------------------------CAATCAAATCACTATCTGAATCCGTATA--TCCATTATCAAATCTAATAAATTTCAAAACATTCTTAAAGTCTTTGCATTGGACGCCAAACTGCGGTTCGATGACAATGCAGAGTTCCGT
droPer2	scaffold_3:5767654-5767859 -		ACCC--ATTCCCA-------ACTGTAA-AAAACCATGGATTTCATATTTTTCTGTCCAGGCTGTGAGTATGCATG---------------------A----------------------AA----------------------------------------------------------------------------------CCGTT-----------------ATTCCATCAAT-TAAG-----------------------------------------------------------------------------------------------------------------------------------------CAATCAAATCACTATCTGAATCCGTATA--TCCATTATCAAATCTAATAAATTTCAAAACATTCTTAAAGTCTTTGCATTGGACGCCAAACTGCGGTTCGATGACAATGCAGAGTTCCGT
droWil2	scf2_1100000004902:6415563-6415658 +		ATTT--AATTGAG-------TATATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTATAACTAACAT---------CTTTCCATTAGTCTTTGCATTGGATGCTAAACTCCGTTTCGATGACAATGCCGAATTCCGT
droVir3	scaffold_13047:3178783-3178835 +		-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTCTTCGCCCTCGATGCTAAATTGCGTTTTGATGACAATGCCGAGTTCCGT
droMoj3	scaffold_6540:20220329-20220588 +		ATTC--ATCTATATCATAATAACGTCAATAATG-CTGC--GTGATGCTGACTTGTAAAGGCTGTAAGTACTGCTTTATATATATGGTTGCACTTTGAAATCACACTACATAAAATCACC----CAAT----ATA------------AGCTCA-----------------------------ACGGAAATTTACTAAACAAAAATCCACTTAAACATGATAAATTGAA--------T-TAA--------------------------------------------------------------------------------------------------------------------------A----TTTTAAATA-----------------------AAT--------------------------TTTTCAATTATCAATTATAGTCTTTGCCCTGGATGCCAAATTGCGTTTTGATGACAATGCGGAGTTCCGG
droGri2	scaffold_15074:7552512-7552776 +		ACCC--AC-----------------------------------------------AAAGGCTGTAAGTATTATTCGAAA-------------------------------------------------------------------TGCTTGGTAG---------------CTAGATTTTAAATGACAATCAATAGACAGAAACCTTCTTTAGCATGTTTTGTAGCA--------T-TAAGGTATTA-----AATCAAAAGTAATAATTTAATCCTCAAT----------ATTT---CGTGTAACTAAAAATTGT-------------ATTGTGT----ATTGCTT-----TCGATGTGAATA----TTATAACTA-----------------------ATG--------------------------CATTCTATTGCCAATTGCAGTCTTTGCCCTTGATGCCAAATTGCGTTTCGATGACAATGCCGAGTTCCGG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

ACTC--ATTTGTG-------AATGTCA-TTGAA-CTGGATTTCATGTT-TTCTATCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----AA----AAATA---------------------------------------------------------------------------------------------------------------------------------ACACTT-----------------------------------------------------------TCCACCC-----------ATTAAACTATGTTTAAA----CC-----TA-----------------------ATGAT-T-TGTAA-------------CAACTTTTAATGCTTATCCGTAGTCTTCGCATTGGATGCTAAGCTGCGATTCGATGACAACGCCGAGTTTCGT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATGCTAAGCTGCGATT......................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAAGCTGCGATTCGATGACAA.............	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAACGCCGAGTTT...	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTTTAATGCTTATCCGTAGTCTTCG............................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ACTC--ATTTGTG-------TATGTCA-TTGTA-CTGGATTTCATGTT-TTCTGTCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----AA----TAATA---------------------------------------------------------------------------------------------------------------------------------ACCCTT-----------------------------------------------------------ACCATCC-----------ATTAAACTATGTTTAAG----CC-----TA-----------------------ATGAT-T-TGTAA-------------CAACTTTAAATGCTTACCCGTAGTCTTCGCATTGGATGCTAAGCTGCGATTCGATGACAACGCCGAGTTTCGT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAACGCCGAGTTTCGT	21	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTGGATGCTAAGCTGC..........................	20	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCGATTCGATGAC...............	18	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCTGCGATTCGATGACAAC............	24	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGACAACGCCGAGTTTC..	21	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATGCTAAGCTGCGATTC.....................	22	1	1.00	1	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCTGCGATTCGATGACA..............	22	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATTGGATGCTAAGCTGCG.........................	20	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCGCATTGGATGCTAAGC.............................	21	1	1.00	1	0	0	1	0

dm3

ACTC--ATTTGTG-------ATTGTCA-TTGTA-CTGGATTTGATGTT-TTCTGTCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----AA----TAATA---------------------------------------------------------------------------------------------------------------------------------ACCCTT-----------------------------------------------------------TCCATTC-----------ATTAACCTATGTTTAAA----CC-----TA-----------------------ATGAT-T-TGTAA-------------CAACTTTCAATGATTACCTGTAGTCTTCGCATTGGATGCTAAGCTGCGATTTGATGACAACGCCGAGTTTCGT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGATTTGATGACA..............	18	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCGATTTGATGAC...............	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAACGCCGAGTTTCGT	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGATTTGATGACAACGCC.........	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGCTAAGCTGCGATTTGATGA................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGACAACGCCGAGT.....	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATGCTAAGCTGCGATTTGATGAC...............	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGATGACAACGCCGAGTTTCGT	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCGATTTGATGACA..............	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCTGCGATTTGATGAC...............	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAACGCCGAGTTTCG.	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CAACTTTCAATGATTACCTGTAG..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAAGCTGCGATTTGATGACA..............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTGGATGCTAAGCTGCGATT......................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGCTGCGATTTGATGACAACGCCG........	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................TGTAA-------------CAACTTTCAATGATTACC.......................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................TA-CTGGATTTGATGTT-TTCTGTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCGATTTGATGACAATC...........	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AA----TAATA---------------------------------------------------------------------------------------------------------------------------------ACCCTT-----------------------------------------------------------TCCATAT-----------G.......................................................................................................................................................	21	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

ACTC--ATTTGTG-------AATGTCA-TTGTA-CTGGATTTCATGTT-TTCTGTCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----AA----TATCA------------AGCTTATTAA---------------C-----CCTGC-------------------------------------------------------------------------------------TG-----------------------------------------------------------CTCATTT-----------ATTAAACTATGTTTAAA----CTTTCCTCA-----------------------ATAAT-T-TTAAA-------------CCATTTTAATTGCTTTTCCGCAGTCTTCGCATTGGACGCCAAGCTGCGTTTCGATGACAATGCCGAGTTCCGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACGCCAAGCTGCGTTTCGAT..................	25	1	25.00	25	0	0	0	0	0	0	25
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAAGCTGCGTTTCGATGAC...............	22	1	3.00	3	0	0	1	1	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAGCTGCGTTTCGATGACAATGC..........	26	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGCATTGGACGCCAAGCTGCGTTTC.....................	28	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGACAATGCCGAGT.....	21	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGCCAAGCTGCGTTTCGATGAC...............	25	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGACAATGCCGAGTTCCGT	22	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCGTTTCGATGACA..............	18	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGACGCCAAGCTGCGTTTCGATGAC...............	27	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCATTGGACGCCAAGCTGC..........................	22	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGACAATGCCGAGTTCC..	24	1	1.00	1	1	0	0	0	0	0	0

droYak3

ACTC--ATTTGTG-------AATGTCA-TTGTA-CTGGATTTCATGTT-TTCTGTCCAGGCTGTAAGTATATTTCAC-----------------------------------------C----CA----TGTCA------------AGCTTATTAA---------------CAAATTCCCAT-------------------------------------------------------------------------------------TT-----------------------------------------------------------CTCATTC-----------ATTAAACTATGTTTAAA----CCATCTTTG-----------------------ATGAT-T-ATAAA--------------------CAATGCTTTTCCGTAGTCTTCGCATTGGATGCCAAGCTGCGTTTCGATGACAACGCCGAGTTCCGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGACAACGCCGAGTTCCGT	26	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCGTTTCGATGACA..............	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAACGCCGAGTTCCGT	21	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGATGCCAAGCTGCGTTTCGA...................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATTGGATGCCAAGCTGC..........................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCGATGACAACGCCGAGTTCC..	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCCAAGCTGCGTTTCGATGACAA.............	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGACAACGCCGAGTTCC..	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATGCCAAGCTGCGTT.......................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTGGATGCCAAGCTGCGTTTCGATGAC...............	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGATGACAACGCCGAGTTCCGC	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATGCCAAGCTGCGTTTC.....................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

ACCC--ATTTGTG-------AATGTCA-TTAAT-CTGGATTTCGTGTT-TTCTGTCCAGGCTGTAAGTATGCATTAC-----------------------------------------T----AACAAATCAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCATTT----ATTTCTTAAAAACCAATGCTTATA----CTTTCTTTA-----------------------ATAAT-T-T--------------------CTATTTAAAATTATTCATAGTCTTCGCATTGGACGCCAAGCTGCGTTTCGATGACAATGCCGAGTTCCGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

ACCC--ATTTGTG-------AATGTCA-TTATG-CTGGATTTCATGTT-GTCTGTCCAGGCTGTAAGTATTTATCAC-----------------------------------------C----TACTAA---CA------------AGCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTGATTCATTATATTTTAATAAAAATATACTTAAT----CC-------------------------------TGAT-T-TTTAA-------------TTACTTAACATGCTTTTCCCTAGACTTTGCATTGGACGCCAAGCTGCGTTTCGACGACAACGCCGAGTTCCGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAA----CC-------------------------------AGAT-C-TTTAA-------------TCATTTTAAATGCTTCTCCTTAGTCTTTGCACTGGACGCCAAGCTGCGTTTCGATGACAACGCCGAGTTCCGT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACCC--ATTTGTG-------AATGTCA-------CTGGATTTCATGTCTTTCTGTCCAGGCTGTAAGTATATATCAC-----------------------------------------C----CACTAA---CA---------TTTAGTTTG----GAAATATTATTGGTGCAGGATTTACAAAGATTAATAATT---------------------------------CCAT---TTTTAATCTTCAGATATGTTTCCA--TAAACATAAATTCATTTGACAGCAATCGAATTTTTGTGCTAAATAA-----GCTATATAATTAATTTC---------------------------ACTTTAATTCACC-TATTTA-----------------------ATGTT-T-TTTAA-------------TCATTTAAAATGCTTTACCGCAGATTTCGCATTGGACGCCAAGCTGCGCTTCGACGACAATGCTGAGTTCCGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ACCC--ATTTGTG-------AATGTCA-------CTGGATTTCATGTT-TTCTGCCCAGGCTGTAAGTATATGTCAT-----------------------------------------C----AACTAA---CAACGAGTGCATATAGCTTA----GAAATATGATTGGTGCAGGGTTTAT---GTTCAATAATA---------------------------------CTAT---T-TTAATTATCAAAC-TGATTAAAACTAAACATATAATCCTTAAACAGCCATCGTACTT---CGCTAAATAA-----TCCATATCAATAAGTTC---------------------------ACCTTAA----CC-------------------------------TATT-A-TTAAA-------------ACATTTAAAATGCGTTTTTGTAGACTTCGCATTGGACGCCAAGCTGCGTTTCGACGACAACGCTGAGTTCCGT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACCC--ATTTGTG-------TATGTCA-TACTT-CTGGATTTCATGTA-ATCT-TTTAGGCTGTAAGTATATAAA---------------------A----------------------GACCAA----GCAAA---------------------------------------------------------------------------------------------------------------------------------TCATTG-----------------------------------------------------------TACTCTA-----------ATAAACCCATGTTAATC----CT-----TGAAT--------------------ATGCA-T-CTAAA-------------TAATATTTCTTGCCTTTCTGCAGTCTTTGCATTGGACGCCAAGCTCCGATTCGACGACAACGCCGAGTTCCGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACTC--ATTTGTA-------AATGTCA-TAATG-GTGGATTTTGTG----TCTGTCCAGGCTGTAAGTATATGTATATGTATATG-----------------------------------------------TA---------------------------------------------------------------------------------------------------------------------------------T------------------------------------------------------------------TTCCC-----------GTAAAA-CTCTTAGT--------------TAAACA------------------ACAT--TTTAATA-------------TGACTTAAATTACCTTCTTGTAGTCTTCGCATTGGACGCCAAACTGCGCTTTGATGACAACGCCGAGTTCCGT	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ACTC--ATTTGTG-------CTTGTCC-TAACC-CGGGGTG-----TGTTTCTGTCTAGGCTGTAAGTATTCATTTT-----------------------------------------C----CAGAAA--------------------------------------------------------------------------CTATT-----------------CATCCAAGAAT-TAAA-----------------------------------------------------------------------------------------------------------------------------------------TAAATATA---------------------------------------TTAATTTTAATGGATTTTTGTAGTCTTTGCTTTGGACGCTAAGCTGCGATTCGACGACAACGCCGAGTTCCGT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTTGGACGCTAAGCTGCGA........................	23	1	2.00	2	0	0	0	0	0	2
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCTGCGATTCGACGACA..............	19	1	2.00	2	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCTTTGGACGCTAAGCTGCGATT......................	27	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACAACGCCGAGTTCCGT	19	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGACAACGCCGAGTTCC..	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACGCTAAGCTGCGATT......................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTAAGCTGCGATTCGACGAC...............	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCTAAGCTGCGATTCGACGACAAC............	27	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTCGACGACAACGCCGA.......	19	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCTAAGCTGCGATTCGACGACAAC............	26	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTCGACGACAACGCCGAGTTCC..	25	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTGGACGCTAAGCTGC..........................	19	1	1.00	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACGCTAAGCTGCGAT.......................	20	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTTTGGACGCTAAGCTGCGATT......................	25	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATTCGACGACAACGCCGAG......	22	1	1.00	1	0	0	0	0	0	1

droBip1

ACTCTCATTTGTG-------CTTGTTCCTAATC-CTGGGTGTTTG----GTCTGTCTAGGCTGTAAGTATGCGTTGTTC---------------------------------------T----AA----AACCA---------------------------------------------------------------------------------------------------------------------------------ATCC--------------------------------------------------------------------------------TTAGAGCTTGTTTT--------------GAAT--------------------AAGTATT-TTTAA-------------TAAT-TTTGATGGATTTTTATAGTCTTTGCTTTGGACGCTAAGCTGCGATTCGACGACAATGCCGAGTTCCGT	Size	Hit Count	Total Norm	Total
No Reads

dp5

ACCC--ATTCCCA-------ACTGTAA-AAAACCATGGATTTCATATTTTTCTGTCCAGGCTGTGAGTATGCATG---------------------A----------------------AA----------------------------------------------------------------------------------CCGTT-----------------ATTCCATCAAT-TAAG-----------------------------------------------------------------------------------------------------------------------------------------CAATCAAATCACTATCTGAATCCGTATA--TCCATTATCAAATCTAATAAATTTCAAAACATTCTTAAAGTCTTTGCATTGGACGCCAAACTGCGGTTCGATGACAATGCAGAGTTCCGT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACGCCAAACTGCGGTTCGAT..................	25	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCCAAACTGCGGTTC.....................	20	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGACAATGCAGAGTTCC..	19	1	2.00	2	0	0	0	0	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTGCGGTTCGATGACAATGCA.........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGACAATGCAGAGTTCC..	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCGGTTCGATGACAATGCAG........	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGGTTCGATGACAAT............	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCGGTTCGATGACAAT............	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................CATATTTTTCTGTCCAGGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGACAATGCAGAGTTC...	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAACTGCGGTTCGATGAC...............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTGCGGTTCGATGACAATGCAGA.......	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTGCGGTTCGATGACAATGCA.........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGCCAAACTGCGGTTC.....................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAAACTGCGGTTCGATG.................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCGGTTCGATGACAATGCA.........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACGCCAAACTGCGGTTCGATG.................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGCCAAACTGCGGTTCGA...................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

ACCC--ATTCCCA-------ACTGTAA-AAAACCATGGATTTCATATTTTTCTGTCCAGGCTGTGAGTATGCATG---------------------A----------------------AA----------------------------------------------------------------------------------CCGTT-----------------ATTCCATCAAT-TAAG-----------------------------------------------------------------------------------------------------------------------------------------CAATCAAATCACTATCTGAATCCGTATA--TCCATTATCAAATCTAATAAATTTCAAAACATTCTTAAAGTCTTTGCATTGGACGCCAAACTGCGGTTCGATGACAATGCAGAGTTCCGT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACTGCGGTTCGATGA................	20	1	2.00	2	0	0	0	0	0	2
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGACGCCAAACTGCGGT.......................	20	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGCATTGGACGCCAAACTGCGGTT......................	28	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACAATGCAGAGTTCCGT	19	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACGCCAAACTGCGGTTC.....................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAACTGCGGTTCGATGACA..............	22	1	1.00	1	0	1	0	0	0	0

droWil2

ATTT--AATTGAG-------TATATTA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAATTATAACTAACAT---------CTTTCCATTAGTCTTTGCATTGGATGCTAAACTCCGTTTCGATGACAATGCCGAATTCCGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTGCATTGGATGCTAAACTCC..........................	24	1	2.00	2	1	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACTCCGTTTCGATGAC...............	18	1	2.00	2	2	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGACAATGCCGAATTCCGT	22	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATGCTAAACTCCGTTTCGATGA................	27	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCTAAACTCCGTTTCGATGACA..............	25	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTTTCGATGACAATGCC.........	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTAAACTCCGTTTCGATGACA..............	23	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGTTTCGATGACAATGCCGAATTCC..	28	1	1.00	1	0	1	0	0	0

droVir3

-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTCTTCGCCCTCGATGCTAAATTGCGTTTTGATGACAATGCCGAGTTCCGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGCCCTCGATGCTAAATTGCGT........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAATTGCGTTTTGATGAC...............	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGCGTTTTGATGACAATGCCGAG......	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTCGCCCTCGATGCTAAAT.............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCTCGATGCTAAATTG...........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTTTGATGACAATGC..........	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCGTTTTGATGACAATGCCGA.......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTTTGATGACAATGCCG........	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGATGACAATGCCGAGTTCC..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGACAATGCCGAGTTCCGT	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCTCGATGCTAAATTGC..........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAATTGCGTTTTGATGACAATGC..........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

ATTC--ATCTATATCATAATAACGTCAATAATG-CTGC--GTGATGCTGACTTGTAAAGGCTGTAAGTACTGCTTTATATATATGGTTGCACTTTGAAATCACACTACATAAAATCACC----CAAT----ATA------------AGCTCA-----------------------------ACGGAAATTTACTAAACAAAAATCCACTTAAACATGATAAATTGAA--------T-TAA--------------------------------------------------------------------------------------------------------------------------A----TTTTAAATA-----------------------AAT--------------------------TTTTCAATTATCAATTATAGTCTTTGCCCTGGATGCCAAATTGCGTTTTGATGACAATGCGGAGTTCCGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAAATTGCGTTTTGATGA................	20	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTGCGTTTTGATGACAATGCGGA.......	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTTGCCCTGGATGCCAAATTG...........................	22	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTTTGATGACAATGCGGAGTTC...	26	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCCTGGATGCCAAATTGCGT........................	24	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGATGACAATGCGGAGTTCC..	24	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCTGGATGCCAAATTGC..........................	20	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCTGGATGCCAAATTGC..........................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTTGATGACAATGCGGA.......	19	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTTTTGATGACAATGCA.........	20	1	1.00	1	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCGTTTTGATGACAAT............	20	1	1.00	1	0	0	0	1	0	0

droGri2

ACCC--AC-----------------------------------------------AAAGGCTGTAAGTATTATTCGAAA-------------------------------------------------------------------TGCTTGGTAG---------------CTAGATTTTAAATGACAATCAATAGACAGAAACCTTCTTTAGCATGTTTTGTAGCA--------T-TAAGGTATTA-----AATCAAAAGTAATAATTTAATCCTCAAT----------ATTT---CGTGTAACTAAAAATTGT-------------ATTGTGT----ATTGCTT-----TCGATGTGAATA----TTATAACTA-----------------------ATG--------------------------CATTCTATTGCCAATTGCAGTCTTTGCCCTTGATGCCAAATTGCGTTTCGATGACAATGCCGAGTTCCGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGCCCTTGATGCCAAATTG...........................	21	1	1.00	1	1	0
............................................................................................................................................................................................................................................................................TTAATCCTCAAT----------ATTT---CGTGT....................................................................................................................................................................................................	21	1	1.00	1	1	0

dsi_9503

3r:16246507-16246597 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads