ID:

dsi_9496

 Coordinate:

3r:17112980-17113129 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.2 -15.1 -15.1

Flybase annnotation

five_prime_UTR [3r_17112966_17112979_-]; CDS [3r_17112717_17112965_-]; exon [3r_17112717_17112979_-]; intron [3r_17112980_17113371_-]

No Repeatable elements found

mature
star
  1. 2l:13500301-13500318 +
  2. dsi_9496  3r:17113076-17113093 -

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TGCCCCACCTGTCTTGCAAAATTGCATGCGAGTGCCAACAAACACAGGTAGAACGTAGAAAATACACACCCCACTGGGCGCAGCCTTGCCTCGGCAGCCTTGGCTCACCCGAAACCACCCACTGCCATTCACCACCTACTAACTTGGCTCCAAGTTCACGTCCTCGATATGCGCTATTCACATTTAGAATCGTTTTGCAGCCCACGCGGTCAACATGTTCCGGCCAAGTTGGTATCCATTCGCCAGCCTG
**************************************************************************************......(((((...(((.((....))..)))....)))))..............((((((....))))))..............(((..((((.......)))))))....***************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR902009
testis
 M023
head
.................................................................................................................................................................................TCACATTTAGAATCGTTTTG..................................................... 20 0 1 1.00 1 0 1 0
......................................................................................TGCCTCGGCAGCCTTGGC.................................................................................................................................................. 18 0 2 0.50 1 1 0 0
.....................................................................................TTGCCTCGGCAGCCTT..................................................................................................................................................... 16 0 4 0.50 2 2 0 0
...................................CAACAAACAGAGGTGGAAC.................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1
.....................................................................................TTGCCTCGGCAGCCTTGT................................................................................................................................................... 18 1 4 0.25 1 1 0 0
.....................................................................................TTGCCTCGGCAGCCTTGA................................................................................................................................................... 18 1 4 0.25 1 1 0 0
.....................................................................................TTGCCTCGGCAGCCTTGG................................................................................................................................................... 18 0 4 0.25 1 1 0 0
.....................................................................................TTGCCTCGGCAGCCTTG.................................................................................................................................................... 17 0 4 0.25 1 1 0 0
.....................................................................................TTGCCTCGGCAGCCTTGGA.................................................................................................................................................. 19 1 4 0.25 1 1 0 0
......................................................................................TGCCTCGGCAGCCTTGG................................................................................................................................................... 17 0 7 0.14 1 1 0 0
.......................................................................................GCCTCGGCAGCCTTGG................................................................................................................................................... 16 0 7 0.14 1 1 0 0

Anti-sense strand reads

ACGGGGTGGACAGAACGTTTTAACGTACGCTCACGGTTGTTTGTGTCCATCTTGCATCTTTTATGTGTGGGGTGACCCGCGTCGGAACGGAGCCGTCGGAACCGAGTGGGCTTTGGTGGGTGACGGTAAGTGGTGGATGATTGAACCGAGGTTCAAGTGCAGGAGCTATACGCGATAAGTGTAAATCTTAGCAAAACGTCGGGTGCGCCAGTTGTACAAGGCCGGTTCAACCATAGGTAAGCGGTCGGAC
*****************************************************......(((((...(((.((....))..)))....)))))..............((((((....))))))..............(((..((((.......)))))))....************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR618934
dsim w501 ovaries
 M024
male body
...........................................................................................................GGTCTTTAGAGGGTGACGGTAA......................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..........................ACGCTAACGGTTGTCTGT.............................................................................................................................................................................................................. 18 2 7 0.29 2 0 2 0 0 0 0
....................................................................................................ACCGCGTGGGCTTTG....................................................................................................................................... 15 1 11 0.18 2 0 0 2 0 0 0
...............................CACGGTTGTTAGTTGCCATC....................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 1 0 0
.........................................................................................................................................................................ACGTGATAAGTGTAAA................................................................. 16 1 10 0.10 1 0 0 0 0 1 0
...............................CAAGGTTGTATGTGTCC.......................................................................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0
......................................................................................................................................................................................................TCGGTTGCTCCAATTGTAC................................. 19 3 20 0.05 1 0 0 0 0 0 1
........................................................................................................................TGACGGTAAGTGGTGGTGG............................................................................................................... 19 2 20 0.05 1 1 0 0 0 0 0
............................................................................................................GGCTTTGGTAGGTCAC.............................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0

Generated: 04/23/2015 at 12:14 PM