ID:

dsi_9457

 Coordinate:

3r:6854673-6854863 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.1 -31.1 -30.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGATTACTAACCCATCATGCACTGTAATCCAAGGTTTTTGCGGTAATCCGGTAATCAATCCCTTTCCACACCTTGCATTCGCCACCGGGATTCCTTCGTTACATCCCGATTTCCCCAAAAACTTCCTAAATCCACCTTGGGCAGCTCGTTGATCATCTTCCACGTAGATCAGTTGACTTTTGTTTAACGATAAACCAAGGCAAGGACTTTACCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACAACAACCAGAACCAAAGCAAAGAATCC
**************************************************......................(((((........((((((...........))))))..........................((((((.....(((((((.((...((.((........)).))....)).)))))))....))))))..(((((........)))))................)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................................................................................................AAACCAAGGCAAGGACTT.................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................ATAAACCAAGGCAAGGAC.................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................................................................................................AAGGCAAGGACTTTACCC............................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................AACAACAACAACCAGAACCAAAGCA........ 25 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................GTAGAGCAGTTGACTTTT.............................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................GATAAACCAAGGCAAGGACTT.................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................GTAGAGCAGTTGACTTT............................................................................................................... 17 1 3 0.67 2 0 1 0 0 1 0 0
...............................................................................................................................................................CGACTTAGCTCAGTTGAC.................................................................................................................. 18 3 20 0.60 12 1 0 11 0 0 0 0
...................................................................................................................................................................GTAGATCAGTTGACTC................................................................................................................ 16 1 2 0.50 1 0 0 0 0 0 1 0
.............................................................................................................................................................................TGACTTGTGTCTAACCATAAA................................................................................................. 21 3 2 0.50 1 0 0 0 0 1 0 0
....................................................................................................................................................................TAGAGCAGTTGACTTT............................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 1
....................................................................................................................................................................TAGAGCAGTTGACTT................................................................................................................ 15 1 9 0.11 1 0 1 0 0 0 0 0
................................................................................................................................................................................CTTTTGTATAGGGATAAACC............................................................................................... 20 3 9 0.11 1 0 1 0 0 0 0 0
.....................................................................................................................................................................AGAGCAGTTGACTTT............................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................CGTTCTGATTTTTGT.............................................................. 15 1 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

ACTAATGATTGGGTAGTACGTGACATTAGGTTCCAAAAACGCCATTAGGCCATTAGTTAGGGAAAGGTGTGGAACGTAAGCGGTGGCCCTAAGGAAGCAATGTAGGGCTAAAGGGGTTTTTGAAGGATTTAGGTGGAACCCGTCGAGCAACTAGTAGAAGGTGCATCTAGTCAACTGAAAACAAATTGCTATTTGGTTCCGTTCCTGAAATGGGGCAAGACTAAAAAAAGAGGTGAACGTCTCCACCGTGTGTAGCGGTTGTTGTTGTTGGTCTTGGTTTCGTTTCTTAGG
**************************************************......................(((((........((((((...........))))))..........................((((((.....(((((((.((...((.((........)).))....)).)))))))....))))))..(((((........)))))................)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 M053
female body
 M023
head
...............................................................................GCGGTGGCCATAAGGA.................................................................................................................................................................................................... 16 1 1 4.00 4 4 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CATGTGTAGCGTTTGTTCTTG........................ 21 3 2 1.00 2 0 0 2 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................CGGGAGTAGCGGTTGTTGTTGG....................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................AAGCGGTGGCCATAAGGA.................................................................................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................AAGCGGTGGCCATAAGG..................................................................................................................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CCGTTCAAGAAATGCGGCAAG........................................................................ 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..............................................................................AGCGGTGGCCATAAGGA.................................................................................................................................................................................................... 17 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................AAAGCGGTGGCCATAAGGA.................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................GAAGCGGTGGCCATAAGGA.................................................................................................................................................................................................... 19 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0
..............................................................................AGCGGTGGCCATAAGG..................................................................................................................................................................................................... 16 1 5 0.80 4 3 1 0 0 0 0 0 0 0 0
.............................................................................AAGCGGTGGCCCCAAG...................................................................................................................................................................................................... 16 1 3 0.67 2 0 0 0 2 0 0 0 0 0 0
.............................................................................AAGCGGTGTCCATAAGGA.................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.............................................................................AAGCGGTAGCCATAAGGAGG.................................................................................................................................................................................................. 20 3 6 0.50 3 0 1 0 0 0 2 0 0 0 0
.........................................................................ACGGAAGCGGTAGCCATAAGG..................................................................................................................................................................................................... 21 3 4 0.50 2 0 1 0 0 0 1 0 0 0 0
.............................................................................AAGCGGTAGCCATAAGGA.................................................................................................................................................................................................... 18 2 4 0.50 2 1 1 0 0 0 0 0 0 0 0
.........................................................................ACGGAAGCGGTAGCCATAAGGA.................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0 0
...........................................................................GGAAGCGGTGGCCATAAGG..................................................................................................................................................................................................... 19 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..............................................................................AGCGGTAGCCATAAGGAGG.................................................................................................................................................................................................. 19 3 20 0.30 6 0 2 0 2 0 1 1 0 0 0
..............................................................................AGCGGTGGCCTTAAGG..................................................................................................................................................................................................... 16 1 8 0.25 2 0 0 0 2 0 0 0 0 0 0
...................................................................................................................................GGTGGAATCCGCCGACCAA............................................................................................................................................. 19 3 20 0.20 4 0 0 3 0 0 0 0 0 1 0
...............................................................................................................................TTTAGGTGGAACGCGGTGAGC............................................................................................................................................... 21 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0
.............................................................................AAGCGGTAGCCATAAGG..................................................................................................................................................................................................... 17 2 20 0.20 4 0 0 0 1 0 2 1 0 0 0
..............................................................................AGCGGTGACCATAAGGA.................................................................................................................................................................................................... 17 2 17 0.18 3 0 3 0 0 0 0 0 0 0 0
...........................................................................GGAAGCGGTGGCCCTA........................................................................................................................................................................................................ 16 1 6 0.17 1 0 0 0 0 0 0 1 0 0 0
.............................................................................AAGCGGTGACCATAAGGA.................................................................................................................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0
............................................................................GAAGCGGTGGCCATAAGG..................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
..............................................................................AGCGGTGGCCATAAGGAG................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0 0 0
..........................................................................CGTAAGCGGTGGTCTCAAGGA.................................................................................................................................................................................................... 21 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................AAAAAGAGGTGAATGACT................................................. 18 2 16 0.13 2 0 2 0 0 0 0 0 0 0 0
..............................................................................AGCGGTGGCCATAAG...................................................................................................................................................................................................... 15 1 8 0.13 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAAAAATAGAGGTGAACGT................................................... 19 2 9 0.11 1 0 0 0 0 0 0 0 1 0 0
..............................................................................AGCGGTGGCCTCAAGGA.................................................................................................................................................................................................... 17 2 20 0.10 2 0 0 0 2 0 0 0 0 0 0
...............................................................................................................................................................................................................................AAAAAAGAGGAGACCGTCT................................................. 19 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0
.............................................................................AAGCGGTGGCCTCAAGGA.................................................................................................................................................................................................... 18 2 11 0.09 1 0 0 0 1 0 0 0 0 0 0
.............................................................................AAGCGGTGACCACAAGGAAG.................................................................................................................................................................................................. 20 3 12 0.08 1 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................................TGTAGAGGTTGTTGTTATTGAT................... 22 3 12 0.08 1 0 1 0 0 0 0 0 0 0 0
.............................................................................AAGCGGTGACCATAAGGAGG.................................................................................................................................................................................................. 20 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................AAGGTGCAGCTCGTCAAC.................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 1 0
......................................................AGTTAGTGAATGTTGTGGAA......................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 0 0 0 0 0 0 0 1
........................................................................................................................................................................................................................................................................TTATTGGTCTTGGTTT........... 16 1 17 0.06 1 0 0 0 1 0 0 0 0 0 0
..........................................................................CGGAAGCGGTGACCATAAGG..................................................................................................................................................................................................... 20 3 17 0.06 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TCGGGCATGACTAAAA................................................................. 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0
........................................GCCATTAGGCCACTC............................................................................................................................................................................................................................................ 15 2 20 0.05 1 0 0 0 0 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:6854623-6854913 - dsi_9457 TGA--------------------------------------------------------------------------------------TTACTAACC-------------------------CAT-------------CATGCACTGTAATCCAAGGTTTTTGCGGTA-------------ATCCGGTAATCA-ATCCCTTTCCACACCTTGCATTCGCCACCGGGATTCCTTCGTTA-CATCCCGA--------------TTTCCC-CAAAAACTTCCTAAATCCA----------------------------------CCT-TGGGCAGCTCGTTGATCATCTT-CCACGTAGATCAGTT----GACTT--TTGT------TTAACGATAAACC---AAGGCAAGG----------ACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAATCC
droSec2 scaffold_5:5484020-5484304 - CAT----------------------------------------------------------------------------------------------------------------------------------------CATACACTGTAATCCAAGGTTTTTGCGGTA-------------ATCCGGTAATCA-ATCCCTTTCCACACCTTGCATTCGGCACCGGGATTCCTTCGTTA-CATCCCGA--------------TTTCCC-CAAAAACTTCCTAAATCCA----------------------------------CCT-TGGGCAGCTCGTTGATCATCTT-CCACGTAGATCAGTT----GACTT--TTGT------TTAACGATAAACC---AAGGCAAGGT----CCCTAACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------CAGAAC------CAGAG---------C----------------------------------AA------------------------------AGAATCC
dm3 chr3R:14411759-14412053 + TGA--------------------------------------------------------------------------------------TTACTAACT-------------------------CAT-------------CATACACTTTAATCC--------------------------------GGTAATCA-ATCCCTTTCCACACCTTGCATTCGGAACCGGGATTCCTTCGTTA-AATCCCGATATTCACAACTAGATTTTCC-CAAAAACTTCCTGAATCCA----------------------------------CCT-TGGGCAGCTCGTTGATCATCTT-CCACGTAGATCAGTT----GACAT--TTGT------TTAACGATAAACC---AAGGCAAGGT----CCCTAACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------CAAC---CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAATCC
droEre2 scaffold_4770:7221740-7222041 - TGA--------------------------------------------------------------------------------------TTACTAACA-------------------------CAT-------------CATACACTGTAATCCAAGGCTTTTACGAAA----------------CC-CCTTTA-ATCCCCTTCCACACCTTGCATTTG-CACCTGGATTTCTCC-----CTTTCCGACTTTCACAACTAGATTTTCG-GTAAAACTTCCTGAATCAA----------------------------------CCT-TGAGCAGCTATTTGATCACCTT-CCACGTAGACCAGTT----GATTT--TTGT------TTAACGATAAAGC---AAGGCAAGGT----CCCTAACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAGCAACA--ACAA----------C------CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAATCC
droEug1 scf7180000409802:1617568-1617901 - TAAGTAAACAATAATAGAAGTTACATATTAAA-AA--------------------------------------------------------------TAATTT------------CATCGAAT----ATTCTATCATTGCATATAATGTAATCCAAGTCTTCTAT---A----------------GA-TCTATA-ATCCTTTTCCACACCTCGCATTTGGCACCTGGTTTCCTCTGTCT-CTTCCCGAATTTCACAA------------------CTCCCAGATCGAA----------------------------------CCT-TAAGCAGC-CGTTGATCATCTTAACTCGTAGTTCTGTT----GCTTT--TTGA------AAAAAGATAAACC---AAGGCAAGGC----CCCT-ACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------CAAC---CAGAAT------CAAAG---------C----------------------------------AA------------------------------AGAATCC
droBia1 scf7180000299102:1533460-1533771 - TTA--------------------------------------------------------------------------------------TTACTAATCGATTTCTCACAGAACACCATCGAAT----ATTTCAAA-------------------------------AAA-------------ATCCA-TATTAG-ATTC-CTTCCACACCTTGCCCTTGTCTCCTGGTTTCCT-CGTTATCTTTCTGCTTTATACAACTCGACTTCCT-CTGAAAAACCCCGAGTCTT----------------------------------CCT-TGAGCATCTCGTTGATCATCTC-CCCCGTAGT-CGTTT----GCTTT--T---------TTAACGATAAACC---AAGGCAAGGC----CCCT-ACTTTA---CCCCGTTCTGATTTC-TTCTCCTCTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------CAACAACCAGAAT------CCAAG---------C----------------------------------AA------------------------------AGAATCT
droTak1 scf7180000415878:406383-406714 - TTA--------------------------------------------------------------------------------------CTACTAACTAATTTCTCTCAAAGGATTATCGACT----TTTTCAAATTTGCATCCACCGTAATCCAAGGCTTTTATGATA----------------AG-TCTTTAAATCC--TTCCACACCTTGCATTTGGATCCTGGTTTCCT-AGTTTCCTCCCTGACTTTCACAACTATATTTCCC-CTGAAAATCCCTGATTTCA----------------------------------CCT-TGGGCAGCTTGTTGATCATCAC-CCACGTAGTTCTGTT----GCATT--T---------TTAAAGATAAACCAACAAGGCAAGGC----CCCT-ACTTTA---CCCCGTTCTGATTTT-TTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------------------CAAAG---------C----------------------------------AA------------------------------AGAATCC
droEle1 scf7180000491008:1825550-1825897 - TGTTT-----------------GCCTCTTAATGAGGCGCTAAA-TGTAATAACAAAAAC-TAAGT-----------------AAA-TTGGT-TTGACT-------------------------CATTTGTTT---------TAGTTTGTAAT---AGGCATT-TGGATA----------------CA-TATTCA-ATCCTTTTCCACACTTGATA-TTG-CATATACTTTCCTCTGTTT-CTTCATGATTTTCAAAAGAAGATATCCCTGTGAAACCCCTTGAATCTC----------------------------------CCT-TGGATTGCTCGTTGATCACCTT-TCCCGTAGTTCAGTT----GCTTT--C---------TTAAAGATAAACC---AAGGCAAGGC----CCCT-ACTTTA---CCCCATTCTGATT-T-TTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------CC------ACAAC------CAAGG---------C----------------------------------AA------------------------------AGAATCC
droRho1 scf7180000779243:14992-15286 - TTT----------------------------------------------------------------------------------------ATCAATT-------------------------TTT-------------GGAAGATTATAATCCTAGGTATTTTGGATA----------------CA-TCTTTT-ATCCTTTTCCACAGCTTGCA-------CCTGTTTATTTCTGTTT-CTTCCTGATTTTCACAACCAGTAAACCATCTTAAACTGCCTGACTCTT----------------------------------CCTTTTGGCAGCTCGTTGATCATCTT-TCCTGTAGTTCAGTT----GCTTT--T---------TTAAAGATAAATC---AAGGCACGGC----CCCT-ACTTTA---CCCTGTTCTGATTTT-TTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------CAGAAT------CAAAG---------C----------------------------------AA------------------------------AGAATCC
droFic1 scf7180000453800:890923-891272 + TGAAT-----------------ACATACTAAA-AATCTCTGATCAGCAATATCACAAATATCAATAATTATAAATTTTGTATAAAGTTGTTACTAACT-------------------------CAT-----------------------------------TTTGGATA----------------CA-TCTTCA-ATCCTTTTCCACACCTTGCATTTGGGATTTGGTTTCCTTCGTAT-TTCCCATAACTTTACAACTAGAACTCCT-TCAGAACTCCTTGATTCTA----------------------------------CCT-TGAGTAGCTCGTTCATCCCCTC-CCCCGTAGTTCTGTT----GTTTT--TTC-------TTAAAGATAAACC---AAGGCAAGGC----CCCT-ACTTTA---CCCCTTTCTTATTTT-TTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAATCC
droKik1 scf7180000302699:113101-113331 + TCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACGGTTCCATATCTTGT------------------TTCGTTA--------ATTTTCA---CTAGATTTTCC-CTG----------TTTCCA----------------CCCAAATCTCCAAATCCGA-------------TTTTATCATATT--CCCGTAGTTCAGTT----GCTTTCTTTG-------TTAAAGATTATTC---AAGGAAAGGC----CCCT-ACTTTATATCCATATTCTGATT-T-TTCTCCACTTGCAGAGGTGACACACATCTCCAACAACA--ACAA----------CA------AAGGCAACAGCCAAAG---------C----------------------------------AA------------------------------AGAATCC
droAna3 scaffold_13340:9701676-9701927 - TTT--------------------------------------------------------------------------------------CTCCTAACT-------------------------TCC-----------------------------------TTGGGCTATACAACTATACTAATCTGT-CTACC-ATCTGTTACCAT----------------------------------CTCCTAACTTTCACA--TAGA-------------------------ACTCTGCCCTGTTTGAGG-------TCTA------CC---------CCCATTTATTAGT----TTAGTAGTTGAGTTGCTTTCCTT--TT--------GTAATGGTTGA-T---ATGGCAAGGT----CCCGATTTTTA---CCCCCATTTTACTCT-TTGTCCACTTGCAGAGGTGGCGCACATCGCCAACAACA--ACAG----------CA------ACAAG------AACTG---------T----------------------------------AA------------------------------AGAATCC
droBip1 scf7180000396691:2407510-2407613 - -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGGT----CCCGATTTTTA---CCCCCGTTTTACTCT-TATTCCACTTGCAGAGGTGGCGCACATCGCCAACAGCA--GCAA----------CAAC---AACAAC------AAGAA------CTAT----------------------------------AA------------------------------AGAGTCC
dp5 2:11765662-11765822 - AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTTTAT--------CTTGTAGACTTGTT----GTTTT--ATGAAACCCATTGACGATAACCA---AAGGCAAGGC----CCAA-ACTTTA---CCCGAAATTTACTCT-TTGCTCTATTGCAGAGGTTGCGCACATCGCCAACAACA--ACAA----------CA------ACAAC------AGCAGCAAACCC--------------------------------------------------------CCTTC--------GGGAGCC
droPer2 scaffold_0:8749372-8749529 + AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTTTAT--------CTTGTAGACTTGTT----GTTTT--ATGAAACCCATTGACGATAACCA---AAGGCAAGGC----CCAA-ACTTTA---CCCGAAATTTACTCT-TTGCTCTATTGCAGAGGTTGCGCACATCGCCAACAACA--ACAA----------CA------ACAACAGC---AAACC------C--------------------------------------------------------GCTTC--------GGGAGCC
droWil2 scf2_1100000004943:10586262-10586392 - CTT--------------------------------------------------------------------------------------TTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCACAA---AAGGCATTAT----CCCA-AATTTA---CTCTC---------T-TTGCTTTATTGCAGAGGTTGCTCACTTCGCCAATAATACAACCGCCAACAACAACA---------AT------AGCAGC-------------------------AACAGTAACA---ATAACAA------------------------------CAATTGC
droVir3 scaffold_12855:4434248-4434437 - AAA--------------------------------------------------------------------------------------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTT----TGCTT--TTGC------TTAT---TTTATT---GTGGCAAGGCTCAACCTTATATGTA---CTCT-------CT-T-TTGCTCTATTGCAGAAGTTGCATACTTCGCCAACAACA--ACGG----------CA------ACAAC------AACAACA-------AAAACAACTACAACAACAACAACAATAATAACAACAACAACTACAGCAGCAGCAGCTGCAGCATAAAAGTATCT
droMoj3 scaffold_6540:8789600-8789693 - TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTGCTCTATTGCAGAAGTTGCAAACTTCGCCAACAACA--ACAA----------CA------ACAAC------AACAGCA-A--CTAC----------ATTAGCAACAACAACA---ACAA-CA------------------------------ACAATTG
droGri2 scaffold_14906:6993650-6993719 - TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTGCTCTATTGCAGAAGTTGCATACTTCGCCAACAACA--ACAA----------CAA----CAGCAG------CAACA---------A----------------------------------CA------------------------------ATAATTA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TGA--------------------------------------------------------------------------------------TTACTAACC-------------------------CAT-------------CATGCACTGTAATCCAAGGTTTTTGCGGTA-------------ATCCGGTAATCA-ATCCCTTTCCACACCTTGCATTCGCCACCGGGATTCCTTCGTTA-CATCCCGA--------------TTTCCC-CAAAAACTTCCTAAATCCA----------------------------------CCT-TGGGCAGCTCGTTGATCATCTT-CCACGTAGATCAGTT----GACTT--TTGT------TTAACGATAAACC---AAGGCAAGG----------ACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................AAACC---AAGGCAAGG----------ACTT......................................................................................................................................................................................1811.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................ATAAACC---AAGGCAAGG----------AC........................................................................................................................................................................................1811.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCAAGG----------ACTTTA---CCC..............................................................................................................................................................................1811.00110000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA--ACAA----------C------CAGAAC------CAAAG---------C----------------------------------A......................................2511.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................GATAAACC---AAGGCAAGG----------ACTT......................................................................................................................................................................................2111.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................GTAGATCAGTT----GACTC--.......................................................................................................................................................................................................................................1620.50100000000010000000
droSec2
CAT----------------------------------------------------------------------------------------------------------------------------------------CATACACTGTAATCCAAGGTTTTTGCGGTA-------------ATCCGGTAATCA-ATCCCTTTCCACACCTTGCATTCGGCACCGGGATTCCTTCGTTA-CATCCCGA--------------TTTCCC-CAAAAACTTCCTAAATCCA----------------------------------CCT-TGGGCAGCTCGTTGATCATCTT-CCACGTAGATCAGTT----GACTT--TTGT------TTAACGATAAACC---AAGGCAAGGT----CCCTAACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------CAGAAC------CAGAG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCGCCAACAACA--ACAA----------C------CA..................................................................................................2211.0011000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------C------CAGAAC------CAGAG---------C----------------------------------AA------------------------------AGA....2011.0010100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--ACAA----------C------CAGAAC------CAGAG---------C----------------------------------AA------------------------------A......2411.0010100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA--ACAA----------C------CAGAAC------........................................................................................1850.2010010
dm3
TGA--------------------------------------------------------------------------------------TTACTAACT-------------------------CAT-------------CATACACTTTAATCC--------------------------------GGTAATCA-ATCCCTTTCCACACCTTGCATTCGGAACCGGGATTCCTTCGTTA-AATCCCGATATTCACAACTAGATTTTCC-CAAAAACTTCCTGAATCCA----------------------------------CCT-TGGGCAGCTCGTTGATCATCTT-CCACGTAGATCAGTT----GACAT--TTGT------TTAACGATAAACC---AAGGCAAGGT----CCCTAACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------CAAC---CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------CAAC---CAGAAC------CAAAG---------C----------------------------------AA------------------------------AG.....2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA--ACAA----------CAAC---CAGAAC------........................................................................................2143.00120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002100000000000000000100000000000000001000101000000000000000000000000000000000041000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAACAACA--ACAA----------CAAC---CAGA................................................................................................2122.5050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA--ACAA----------CAAC---CAGA................................................................................................2042.50100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000012000000000001000000000000000000000000000000000000000000000000000000000000000000003000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA----------CAAC---CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGA....2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA--ACAA----------CAAC---CAGAAC------........................................................................................2041.7570000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000010000100000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA--ACAA----------CAAC---CAGA................................................................................................1981.63130000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000103000000000000000000000000000000000000000100000000000000000000000000000000030000000000000000000000000000000000000000000000010001000000000000000000000000000000000000000000000000000000000000000000000000020000001000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA----------CAAC---CAGAAC------CAAAG---------C----------------------------------A......................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACAACA--ACAA----------CAAC---CAGAAC------C.......................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACATCGCCAACAACA--AC.......................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CC--------------------------------GGTAATCA-ATCCCTTTCCA................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................ATCTT-CCACGTAGATCAGTT----GACAT--.......................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................ACCTTGCATTCGGAACCG.............................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................GCAGCTCGTTGATCATCT...................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--ACAA----------CAAC---CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAA...2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTA---CCCCGTTCTGATTTTTTT...............................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CCCCGTTCTGATTTTTTTCTCCAC.........................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................T------TTAACGATAAACC---AAGGCAAG.....................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--ACAA----------CAAC---CAGAAC------CAAAG---------C----------------------------------AA------------------------------A......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATCGCCAACAACA--ACAA----------...........................................................................................................1921.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................................................................................................................................TGAATCCA----------------------------------CCT-TGGGCAGCTCGTTG..........................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--ACAA----------CAAC---CAGAAC------CA......................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA----------CAAC---CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAAT..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA----------CAAC---CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAA...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TT-CCACGTAGATCAGTT----GA............................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................................................................................................................................................................................................................................................................................ATCTT-CCACGTAGATCAGTT----GA............................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA----------CAAC---CAGAAC------CAAAG---------C----------------------------------AA------------------------------A......2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCTGATTTTTTTCTCCACTTGCAG...................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGT----CCCTAACTTTA---CCCCGT...........................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGAGGTGGCACACATCGCCAACAACA--.........................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................T-CCACGTAGATCAGTT----GACAT--TTGT------.............................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................T------TTAACGATAAACC---AAGGCAAGGT----...............................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
...........................................................................................................................................................................................................................GAACCGGGATTCCTTCGT.................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACACATCGCCAACAACA--A........................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................CGATAAACC---AAGGCAAGGT----C..............................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................CCACACCTTGCATTCGGAACCG.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--ACAA----------CAAC---CAGAAC------........................................................................................1850.8040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000010000100000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA--ACAA----------CAAC---CAGAAC------........................................................................................1950.8040000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000101000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA--ACAA----------CAAC---CAGAAC------........................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA--ACAA----------CAAC---CAGAA...............................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA--ACAA----------CAAC---CAGAA...............................................................................................1950.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA--ACAA----------CAAC---CAGAA...............................................................................................2050.4020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA--ACAA----------CAAC---CAG.................................................................................................18140.3650000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000100000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACA--ACAA----------CAAC---CAGA................................................................................................1880.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACA--ACAA----------CAAC---CAG.................................................................................................19100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA--ACAA----------CAAC---CAGAAC------G.......................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--ACAA----------CAAC---CAGAAT------........................................................................................18180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TGA--------------------------------------------------------------------------------------TTACTAACA-------------------------CAT-------------CATACACTGTAATCCAAGGCTTTTACGAAA----------------CC-CCTTTA-ATCCCCTTCCACACCTTGCATTTG-CACCTGGATTTCTCC-----CTTTCCGACTTTCACAACTAGATTTTCG-GTAAAACTTCCTGAATCAA----------------------------------CCT-TGAGCAGCTATTTGATCACCTT-CCACGTAGACCAGTT----GATTT--TTGT------TTAACGATAAAGC---AAGGCAAGGT----CCCTAACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAGCAACA--ACAA----------C------CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACACATCGCCAGCAACA--ACAA----------C------C...................................................................................................2511.0010100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA----------C------CAGAAC------CAAAG---------C----------------------------------AA------------------------------AG.....2111.0011000000
.................................................................................................................................................................................................................CTTGCATTTG-CACCTGGATTTCTCC-----CTTC..........................................................................................................................................................................................................................................................................................................................................................................2911.0010100000
.....................................................................................................................................................................................................................................................................ATTTTCG-GTAAAACTTCCTG....................................................................................................................................................................................................................................................................................................................................2011.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--ACAA----------C------CAGAAC------CAAAG---------C----------------------------------AA------------------------------A......2411.0010000100
........................................................................................................................................................................................................................................................................................................................................AGCAGCTATTTGATCACCTT-CCACGTA..........................................................................................................................................................................................................................................................2711.0010000100
droEug1
TAAGTAAACAATAATAGAAGTTACATATTAAA-AA--------------------------------------------------------------TAATTT------------CATCGAAT----ATTCTATCATTGCATATAATGTAATCCAAGTCTTCTAT---A----------------GA-TCTATA-ATCCTTTTCCACACCTCGCATTTGGCACCTGGTTTCCTCTGTCT-CTTCCCGAATTTCACAA------------------CTCCCAGATCGAA----------------------------------CCT-TAAGCAGC-CGTTGATCATCTTAACTCGTAGTTCTGTT----GCTTT--TTGA------AAAAAGATAAACC---AAGGCAAGGC----CCCT-ACTTTA---CCCCGTTCTGATTTTTTTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------CAAC---CAGAAT------CAAAG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotal
No Reads
droBia1
TTA--------------------------------------------------------------------------------------TTACTAATCGATTTCTCACAGAACACCATCGAAT----ATTTCAAA-------------------------------AAA-------------ATCCA-TATTAG-ATTC-CTTCCACACCTTGCCCTTGTCTCCTGGTTTCCT-CGTTATCTTTCTGCTTTATACAACTCGACTTCCT-CTGAAAAACCCCGAGTCTT----------------------------------CCT-TGAGCATCTCGTTGATCATCTC-CCCCGTAGT-CGTTT----GCTTT--T---------TTAACGATAAACC---AAGGCAAGGC----CCCT-ACTTTA---CCCCGTTCTGATTTC-TTCTCCTCTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------CAACAACCAGAAT------CCAAG---------C----------------------------------AA------------------------------AGAATCTSizeHit CountTotal NormTotal
No Reads
droTak1
TTA--------------------------------------------------------------------------------------CTACTAACTAATTTCTCTCAAAGGATTATCGACT----TTTTCAAATTTGCATCCACCGTAATCCAAGGCTTTTATGATA----------------AG-TCTTTAAATCC--TTCCACACCTTGCATTTGGATCCTGGTTTCCT-AGTTTCCTCCCTGACTTTCACAACTATATTTCCC-CTGAAAATCCCTGATTTCA----------------------------------CCT-TGGGCAGCTTGTTGATCATCAC-CCACGTAGTTCTGTT----GCATT--T---------TTAAAGATAAACCAACAAGGCAAGGC----CCCT-ACTTTA---CCCCGTTCTGATTTT-TTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------------------CAAAG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotal
No Reads
droEle1
TGTTT-----------------GCCTCTTAATGAGGCGCTAAA-TGTAATAACAAAAAC-TAAGT-----------------AAA-TTGGT-TTGACT-------------------------CATTTGTTT---------TAGTTTGTAAT---AGGCATT-TGGATA----------------CA-TATTCA-ATCCTTTTCCACACTTGATA-TTG-CATATACTTTCCTCTGTTT-CTTCATGATTTTCAAAAGAAGATATCCCTGTGAAACCCCTTGAATCTC----------------------------------CCT-TGGATTGCTCGTTGATCACCTT-TCCCGTAGTTCAGTT----GCTTT--C---------TTAAAGATAAACC---AAGGCAAGGC----CCCT-ACTTTA---CCCCATTCTGATT-T-TTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------CC------ACAAC------CAAGG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotal
No Reads
droRho1
TTT----------------------------------------------------------------------------------------ATCAATT-------------------------TTT-------------GGAAGATTATAATCCTAGGTATTTTGGATA----------------CA-TCTTTT-ATCCTTTTCCACAGCTTGCA-------CCTGTTTATTTCTGTTT-CTTCCTGATTTTCACAACCAGTAAACCATCTTAAACTGCCTGACTCTT----------------------------------CCTTTTGGCAGCTCGTTGATCATCTT-TCCTGTAGTTCAGTT----GCTTT--T---------TTAAAGATAAATC---AAGGCACGGC----CCCT-ACTTTA---CCCTGTTCTGATTTT-TTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------CAGAAT------CAAAG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotal
No Reads
droFic1
TGAAT-----------------ACATACTAAA-AATCTCTGATCAGCAATATCACAAATATCAATAATTATAAATTTTGTATAAAGTTGTTACTAACT-------------------------CAT-----------------------------------TTTGGATA----------------CA-TCTTCA-ATCCTTTTCCACACCTTGCATTTGGGATTTGGTTTCCTTCGTAT-TTCCCATAACTTTACAACTAGAACTCCT-TCAGAACTCCTTGATTCTA----------------------------------CCT-TGAGTAGCTCGTTCATCCCCTC-CCCCGTAGTTCTGTT----GTTTT--TTC-------TTAAAGATAAACC---AAGGCAAGGC----CCCT-ACTTTA---CCCCTTTCTTATTTT-TTCTCCACTTGCAGAGGTGGCACACATCGCCAACAACA--ACAA----------C------CAGAAC------CAAAG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotal
No Reads
droKik1
TCA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACGGTTCCATATCTTGT------------------TTCGTTA--------ATTTTCA---CTAGATTTTCC-CTG----------TTTCCA----------------CCCAAATCTCCAAATCCGA-------------TTTTATCATATT--CCCGTAGTTCAGTT----GCTTTCTTTG-------TTAAAGATTATTC---AAGGAAAGGC----CCCT-ACTTTATATCCATATTCTGATT-T-TTCTCCACTTGCAGAGGTGACACACATCTCCAACAACA--ACAA----------CA------AAGGCAACAGCCAAAG---------C----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotal
No Reads
droAna3
TTT--------------------------------------------------------------------------------------CTCCTAACT-------------------------TCC-----------------------------------TTGGGCTATACAACTATACTAATCTGT-CTACC-ATCTGTTACCAT----------------------------------CTCCTAACTTTCACA--TAGA-------------------------ACTCTGCCCTGTTTGAGG-------TCTA------CC---------CCCATTTATTAGT----TTAGTAGTTGAGTTGCTTTCCTT--TT--------GTAATGGTTGA-T---ATGGCAAGGT----CCCGATTTTTA---CCCCCATTTTACTCT-TTGTCCACTTGCAGAGGTGGCGCACATCGCCAACAACA--ACAG----------CA------ACAAG------AACTG---------T----------------------------------AA------------------------------AGAATCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ACAG----------CA------ACAAG------AACTG---------T----------------------------------AA------------------------------AGAATCC2711.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA--ACAG----------CA------ACAAG------AACT....................................................................................1911.001010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAACAACA--ACAG----------CA------AC.................................................................................................1940.251010000
droBip1
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAAGGT----CCCGATTTTTA---CCCCCGTTTTACTCT-TATTCCACTTGCAGAGGTGGCGCACATCGCCAACAGCA--GCAA----------CAAC---AACAAC------AAGAA------CTAT----------------------------------AA------------------------------AGAGTCCSizeHit CountTotal NormTotal
No Reads
dp5
AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTTTAT--------CTTGTAGACTTGTT----GTTTT--ATGAAACCCATTGACGATAACCA---AAGGCAAGGC----CCAA-ACTTTA---CCCGAAATTTACTCT-TTGCTCTATTGCAGAGGTTGCGCACATCGCCAACAACA--ACAA----------CA------ACAAC------AGCAGCAAACCC--------------------------------------------------------CCTTC--------GGGAGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................................................................................................................................................................................................................................................................................................................................................TTAT--------CTTGTAGACTTGTT----GTT...........................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC------AGCAGCAAACCC--------------------------------------------------------CCTTC--------GGGAGC.2711.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--ACAA----------CA------ACAAC------AGCAGCAAAC..............................................................................2340.2510100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA----------CA------ACAAC------AGCAGCAAA...............................................................................2080.1310000000010
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACA--ACAA----------CA------ACAAC------AGCAGCAA................................................................................24200.0510100000000
droPer2
AG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCGTTTAT--------CTTGTAGACTTGTT----GTTTT--ATGAAACCCATTGACGATAACCA---AAGGCAAGGC----CCAA-ACTTTA---CCCGAAATTTACTCT-TTGCTCTATTGCAGAGGTTGCGCACATCGCCAACAACA--ACAA----------CA------ACAACAGC---AAACC------C--------------------------------------------------------GCTTC--------GGGAGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACA--ACAA----------CA------ACAACAGC---........................................................................................21200.051010000
droWil2
CTT--------------------------------------------------------------------------------------TTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTATCACAA---AAGGCATTAT----CCCA-AATTTA---CTCTC---------T-TTGCTTTATTGCAGAGGTTGCTCACTTCGCCAATAATACAACCGCCAACAACAACA---------AT------AGCAGC-------------------------AACAGTAACA---ATAACAA------------------------------CAATTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCAACAACAACA---------AT------AGC.....................................................................................2011.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACA---------AT------AGCAGC-------------------------AACA.....................................................2370.14100100
droVir3
AAA--------------------------------------------------------------------------------------TC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTT----TGCTT--TTGC------TTAT---TTTATT---GTGGCAAGGCTCAACCTTATATGTA---CTCT-------CT-T-TTGCTCTATTGCAGAAGTTGCATACTTCGCCAACAACA--ACGG----------CA------ACAAC------AACAACA-------AAAACAACTACAACAACAACAACAATAATAACAACAACAACTACAGCAGCAGCAGCTGCAGCATAAAAGTATCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGTA---CTCT-------CT-T-TTGCTCTATTG......................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCTGCAGCATAAAAGT....2111.001000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTACAGCAGCAGCAGCTGCAGCA...........2511.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAACAACAACAACTACAGCAGCAGCA....................2820.501001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G----------CA------ACAAC------AACAACA-------AAAA......................................................................19200.102002000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAATAATAACAACAACA...................................28160.061000100000000000000000000000000000000000000000000000000000000000
droMoj3
TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTGCTCTATTGCAGAAGTTGCAAACTTCGCCAACAACA--ACAA----------CA------ACAAC------AACAGCA-A--CTAC----------ATTAGCAACAACAACA---ACAA-CA------------------------------ACAATTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCA-A--CTAC----------ATTAGCAACA.....................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------ATTAGCAACAACAACA---ACAA-CA------------------------------.......2330.331100000
droGri2
TCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-TTGCTCTATTGCAGAAGTTGCATACTTCGCCAACAACA--ACAA----------CAA----CAGCAG------CAACA---------A----------------------------------CA------------------------------ATAATTASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 02:51 PM