ID:

dsi_9442

Coordinate:

3l:16294596-16294650 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-6.3	-5.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GTAAATCGGGGAGTGCGAAAAGTGTCGTCGAAACGGGGAAAATAATCAAAGTTAACAGTAATATCCTGTTGTGTAAATAAAAGGCTTATACATACACACACACAGTCGCAGAAGCAACAAACAAAGGAGGAAAAAGCGGCAAGATGAATAAAACC ************************************************...............((((((((((.((((.....))))...))))))...))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR902009 testis	M053 female body	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553488 RT_0-2 hours eggs
................GAAAAGTGTCGTCGAAACGGGGA....................................................................................................................	23	0	1	4.00	4	3	0	1	0	0	0	0	0	0
..........................................................................................CATACACACACACAGTCGCAGAAG.........................................	24	0	1	2.00	2	2	0	0	0	0	0	0	0	0
.................AAAAGTGTCGTCGAAACGGGG.....................................................................................................................	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0
................................................................................................CACACACAGTCGCAATAGCAACAAACA................................	27	2	1	1.00	1	0	0	0	0	0	1	0	0	0
.....................................................................................................................CAAACAAAGGAGGAAAAAGCGGCA..............	24	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..........................GTCGAAACGGGGAAAATAATCAAAGT.......................................................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0	0	0
...................AAGTGTCGTCGAAACGGGGA....................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0
..........................................................................................................CGCAGAAGCAACAAACAAAGGAGGAAAA.....................	28	0	1	1.00	1	0	0	0	0	0	0	1	0	0
...................................................................................................................................AAGAGCGACAAGATGAATAA....	20	2	1	1.00	1	0	1	0	0	0	0	0	0	0
.....TCGGGGAGTGCGAAAAGTGTCGTCGAAA..........................................................................................................................	28	0	1	1.00	1	0	0	0	0	1	0	0	0	0
................................................................CCTGTTGTGTAAATAAAAG........................................................................	19	0	1	1.00	1	0	0	0	1	0	0	0	0	0
.......................GTCGTCGAAACGGGGAAAAT................................................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.............................................................................................ACACACACACAGTCGCAGAAG.........................................	21	0	1	1.00	1	0	0	0	1	0	0	0	0	0
...........................................................................AATAAAAGGCTTATACATACAC..........................................................	22	0	1	1.00	1	0	0	0	0	0	0	0	1	0
...............................................................................................................ATGAAACAAACAAAGGAGGAA.......................	21	2	3	0.33	1	0	1	0	0	0	0	0	0	0
............GTCCGAAAGGCGTCGTCGA............................................................................................................................	19	3	13	0.08	1	0	0	0	0	0	0	0	0	1
............................................................ATATACTGTTGTGTA................................................................................	15	1	16	0.06	1	0	0	0	0	1	0	0	0	0

Anti-sense strand reads

CATTTAGCCCCTCACGCTTTTCACAGCAGCTTTGCCCCTTTTATTAGTTTCAATTGTCATTATAGGACAACACATTTATTTTCCGAATATGTATGTGTGTGTGTCAGCGTCTTCGTTGTTTGTTTCCTCCTTTTTCGCCGTTCTACTTATTTTGG ************************************************...............((((((((((.((((.....))))...))))))...))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
..............................ATTGCCCCTTTTATTAGTTTCG.......................................................................................................	22	2	1	1.00	1	1	0	0	0
.......................................ACCATTAGTTTCAATTGTCATTA.............................................................................................	23	3	2	0.50	1	1	0	0	0
.....................................................................................AAAATGTATGTCTGTGTGT...................................................	19	2	20	0.10	2	0	1	0	1
CCTCTAGCCCCTCAAGCTTT.......................................................................................................................................	20	3	12	0.08	1	0	1	0	0
.....................................................................................AAAATGTATGTGTGTGTGT...................................................	19	1	15	0.07	1	0	0	1	0

Generated: 04/24/2015 at 04:04 AM