dsi_9439

exon [3l_9120471_9120696_-]; CDS [3l_9120471_9120696_-]; exon [3l_9120266_9120404_-]; CDS [3l_9120266_9120404_-]; intron [3l_9120405_9120470_-]

##################################################------------------------------------------------------------------################################################## CTGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGACATATAGTTGGATATATATTTATTACAATTTAATACTCAATATTTTGGTTCTTTTTTTCCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGC ************************************************.(((.....(((((((((......)))).)))))......))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	M024 male body	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR902009 testis	O001 Testis
......................CACCGACAAGACCCGG................................................................................................................................	16	1	1	2.00	2	0	0	2	0	0	0	0
..............................................................................................................................................CAAGCTGCGCCTGTTGGAAA....	20	0	1	1.00	1	0	0	0	0	0	0	1
................................................................................................................................................AGCTGCGCCTGTTGGAAA....	18	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................TTAAGGGTGGTACTCTCATTCAAATGGA...........................	28	2	1	1.00	1	0	0	0	1	0	0	0
...............TGGAGGTCACCGACAAGACCCGTGC..............................................................................................................................	25	0	1	1.00	1	1	0	0	0	0	0	0
.....................TCACCGACAAGACCCGGGT..............................................................................................................................	19	2	1	1.00	1	0	0	1	0	0	0	0
................................ACCCGTGCTGACGTTAAG....................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0
...................................................TGACATATAGTTGGATATATA..............................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................ATGGAAAACAAGCTGCGCCTGG..........	22	1	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................AAGCTGCGCCTGTTGGAA.....	18	0	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................GGAAAACAAGCTGCGCC.............	17	0	1	1.00	1	0	0	0	0	1	0	0
.....................................TGGTGACGGTAAGGAGACATA............................................................................................................	21	3	1	1.00	1	0	0	0	0	1	0	0
.........................................................................................................................................GAAAACAAGCTGCGCCTGTT.........	20	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................TCAAATGGAAAACAAGCTGCG...............	21	0	1	1.00	1	0	0	0	0	0	1	0
..........TGTCATGGAGGTCACCGAC.........................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0	0	0
..................................................................TATCTATTTCTTACAATTTA................................................................................	20	2	7	0.14	1	0	0	0	0	0	1	0

GACACCTCAAACAGTACCTCCAGTGGCTGTTCTGGGCACGACTGCAATTCCACTGTATATCAACCTATATATAAATAATGTTAAATTATGAGTTATAAAACCAAGAAAAAAAGGTCCCACCATGAGAGTAAGTTTACCTTTTGTTCGACGCGGACAACCTTTAACG ************************************************.(((.....(((((((((......)))).)))))......))).......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
.............................................AAATCCACTGTATATCA........................................................................................................	17	1	1	1.00	1	1	0	0
...............................................................................................................AGGCCCCATCATGAGAG......................................	17	2	4	0.25	1	0	1	0
.................................................................................................................................................AGACGCGGACAACCT......	15	1	13	0.08	1	1	0	0
.............................................AAATCCACTGTATAT..........................................................................................................	15	1	15	0.07	1	1	0	0
..........................................................................................................AAAAAAGGTGCCACCTCGA.........................................	19	3	20	0.05	1	0	0	1

Species	Coordinate	ID	Alignment
droSim2	3l:9120355-9120520 -	dsi_9439	CTGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGACAT-AT-----------------------------------------------------------------------------------------------AGTTG-------------GATAT--------------------------------------ATATTTATT-----A-CA------------ATTTAATACT--CAAT--------------A-TT--------TTGG-T--TC-----TTTTTTTCCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGC
droSec2	scaffold_0:1595125-1595288 -		CTGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGAGAT--------------------------------------------------------------------------------------------------AGTTG-------------GATAT--------------------------------------ATGTTTACA-----A-CA------------ATTTAATACT--TAAT--------------A-TT--------TTGG-T--TC-----TTTTTTTCCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGC
dm3	chr3L:9345594-9345751 -		CAGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGAGTT-AT-----------------------------------------------------------------------------------------------AGTTGT------------GATAT--------------------------------------ATTATTACT-----A-AA------------ATTTAATACT--TAA----------------------------------------CTTTTTTTTCCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGC
droEre2	scaffold_4784:9345038-9345205 -		CTGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGCGAT-AT-----------------------------------------------------------------------------------------------AGTTG-------------GACAT--------------------------------------ATTTCTAAT-----A-CA------------ATTTAATACT--CAAT--------------A-AT--------TTGG-G--TC---TTCTTTTTTCCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGTCTGCTGGAAATTGC
droYak3	3L:2571527-2571696 +		CTGTGGAGTTTGTCATGGAGGTCACTGACAAGACCCGTGCTGACGTTAAGGTGAGATTAT-----------------------------------------------------------------------------------------------AGTTG-------------GACAA--------------------------------------ATTTGTAAT-----A-CA------------ATTGAATACT--TAAT--------------A-AT--------TTGT-T--TC--TTATTTTTGTTCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGCTGGAAATTGC
droEug1	scf7180000409824:186025-186186 +		CCGTGGAGTTTGTCATGGAGGTCACCGATAAGACCCGTGCTGACGTTAAGGTGAGAT-TT-----------------------------------------------------------------------------------------------TGTTGAGGAAAGTGTAAGGAAAA--------------------------------------ATC--------------AT------------TTTAATACA------------------------------------------TTTTTCATTTTTCTAGGGTGGTACTCTCATCCAAATGGAGAACAAGCTGCGACTGCTGGAAATCGC
droBia1	scf7180000300910:1866809-1866976 +		CCGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGATGTTAAGGTGAGGG-AT--------------------------------------------------------------------------TGCTGCATATAATA--TACATAGTGG-------------GGTAA--------------------------------------AG----------------------------------A------AAT--------------A-TA--------TTGA-T--TT--TTTTCTTCTCCCAGGGTGGTACTCTCATTCAAATGGAGAACAAGCTGCGTCTGCTGGAAATCGC
droTak1	scf7180000415664:289778-289935 +		CTGTGGAGTTTGTGATGGAGGTCACCGACAAGACCCGTGCTGATGTTAAGGTAGGAA----------------------------------------------------------------------------------------------------------------------TAT--------------------------------------TTTCTTAAT-----A-AT------------ATATAATAAT-ATAAT--------------A-AT--------TTGT-T--T-----GCTTTCCCCCAGGGTGGTACTCTCATCCAAATGGAGAACAAGCTGCGCCTGCTGGAAATCGC
droEle1	scf7180000491193:3595778-3595844 -		CAGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTGAAGGTGGGAT-AT-----------------------------------------------------------------------------------------------AATTA-------------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droRho1	scf7180000775999:33237-33333 -		TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TT------------ATATTGTACCTATTAT--------------A--A--------TTG--A--TTTTTATCTTCCATGCAGGGTGGTACCCTCATCCAAATGGAGAACAAGCTGCGCTTGCTGGAAATCGC
droFic1	scf7180000454065:2301125-2301392 +		CCGTGGAATTTGTGATGGAGGTCACTGACAAGACCCGTGCTGACGTTAAGGTAAGAG--------------------TTGTGCAGGAAATGTTGAAGTATAAATGGTATTAAGATGTTATAGTGAGATAACGATTACTGTATAAAATCACTACATCG--------------AGAAATATTTATAAAACTGATTCCGTATTTGTTGATTAATTTGTAATT-G--ATTTGTTT-----------------T--TA------------------ATTTA------A--------A-T--T-----CTTTTATTCCAGGGTGGTACTCTCATCCAAATGGAGAACAAGCTGCGACTGTTGGAAATCGC
droKik1	scf7180000302486:1881242-1881380 -		TTGAA----------------------------------ATGATATCAAATTATGAG--------------------T---------CAT-----------------------------------------------------------------ATTTG-------------TGAAT--------------------------------------AT------CTAAAT-------T-TTCTTTT------------------------------TTTTTTAATAATTTATTTCCCC--TCTTTCTCTTGCAGGGTGGTACCCTCATCCAAATGGAGAACAAACTGCGACTGCTGGAAATCGC
droAna3	scaffold_13337:16936099-16936261 -		CAGTGGAGTTCGTTATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGGGTC-TC-----------------------------------------------------------------------------------------------TGCC----TAAACTTATT---------------------------------------------------------A-AA------------ATATTT---------GAACTAATGTGATAA--------------AA-T--T-----CTACTCTTTCAGGGTGGTACTCTCATCCAAATGGAGAACAAACTGCGCCTGCTGGAAATCGC
droBip1	scf7180000396641:426799-426961 -		CAGTGGAGTTCGTTATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGGGTC-TC-----------------------------------------------------------------------------------------------TCCT----AAAATGTATGGAAGT--------------------------------------AT------TA-----------------------------------AAATTAATGTTTTAA--------------AA-T--C-----CAACTATTTCAGGGTGGTACTCTCATCCAAATGGAGAACAAACTGCGCCTGCTGGAAATCGC
dp5	XR_group5:181568-181732 +		CAGTGGAATTTGTCATGGAAGTCACTGACAAGACACGGGCTGATGTCAAGGTGGGAA--------------------AGGCACAACGATTGTTC-----------------------------------------------------------------------------AGCCA---------------------------------------------------------------------------AAACC--TTAT--------------AATT--------T-CGGC--TATTTTTTTCCCCTTCAGGGTGGCACTCTCATACAGTTCGAGAACAAGCTGCGGCTGCTGGAAATTGC
droPer2	scaffold_58:234422-234586 -		CAGTGGAATTTGTCATGGAAGTCACTGACAAGACACGGGCTGATGTCAAGGTGGGAA--------------------AGGCACAACAATTGTTC-----------------------------------------------------------------------------AGCAA---------------------------------------------------------------------------AAACC--TTAT--------------AATT--------T-CGGC--TATTTTTTTCCCCTTCAGGGTGGCACTCTCATACAGTTCGAGAACAAGCTGCGGCTGCTGGAAATCGC
droWil2	scf2_1100000004837:1090877-1091059 +		CAGTTGAATTCGTTATGGAGGTCACTGATAAAACGCGTGCTGATGTTAAGGTAAACC-CCTCCCTCTCCTCTCAAAAT---------CAA-----------------------------------------------------------------ATATG-------------AGATT--------------------------------------G------TTATGAT-------A-ATCTTTC------------------------------TTCTATACAAATA-----------TGTCTTTATAATAGGGTGGCACACTTATACAATTTGAGAATAAGCTACGCCTATTGGAAATTGC
droVir3	scaffold_13049:11044107-11044263 -		CATTCGAGTTCGTCATGGAGGTCACCGACAAGACCCGTGCTGATGTCAAGGTGGCTC--------------------CAGTG-----------C-----------------------------------------------------------------------------AGCAA-A--------------------------------------ACT-G--TTTTGTGT----------------GT--GA------------------ATACA------T---------------ATTCTCTCCTTTGTAGGGTGGCACGCTCATACAAATGGAGAACAAGTTGCGCCTGCTGGAAATCGC
droMoj3	scaffold_6680:9779878-9780034 +		CCTTCGAATTCGTCATGGAGGTGACCGACAAGACCCGTGCTGATGTCAAGGTAACTA--------------------AGGTGCTGAGGCTG------------------------------------------------------------------------------------------------------------------------------------TCCTGTCAGCATACTC-------A---T---------AT--------------A-CT---------------------CTGTCCTTTTTAGGGTGGCACGCTCATCCAAATGGAGAACAAGCTGCGACTGCTGGAAATTGC
droGri2	scaffold_8986:3040-3200 -		CCCCAGAATTCGTTATGGAGGTCACCGACAAGACCCGTGCTGATGTTAAGGTATCCC--------------------C---------AATCCTC-----------------------------------------------------------------------------AGCAACA--------------------------------------ACT--------------ATATTC-------ATATTGT------------------ATTCA------AAT---G----C--C-----GTCGTTTTTTAGGGTGGTACTCTTATTCAAATGGAGAACAAGCTGCGCTTGCTGGAAATCGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

CTGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGACAT-AT-----------------------------------------------------------------------------------------------AGTTG-------------GATAT--------------------------------------ATATTTATT-----A-CA------------ATTTAATACT--CAAT--------------A-TT--------TTGG-T--TC-----TTTTTTTCCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................CACCGACAAGACCCGG......................................................................................................................................................................................................................................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CAAGCTGCGCCTGTTGGAAA....	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AGCTGCGCCTGTTGGAAA....	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............TGGAGGTCACCGACAAGACCCGTGC....................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ACCCGTGCTGACGTTAAG..........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TGACAT-AT-----------------------------------------------------------------------------------------------AGTTG-------------GATAT--------------------------------------ATA.................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATGGAAAACAAGCTGCGCCTGG..........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGCTGCGCCTGTTGGAA.....	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GGAAAACAAGCTGCGCC.............	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAAAACAAGCTGCGCCTGTT.........	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................TCAAATGGAAAACAAGCTGCG...............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........TGTCATGGAGGTCACCGAC...............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CTGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGAGAT--------------------------------------------------------------------------------------------------AGTTG-------------GATAT--------------------------------------ATGTTTACA-----A-CA------------ATTTAATACT--TAAT--------------A-TT--------TTGG-T--TC-----TTTTTTTCCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
......................................................................................................................................................................................................................................................................................................................................................AGCTGCGCCTGTTGGAAAT...	19	1	3.00	3	1	1	1	0
...................................................................................................................................................................................................................................................................................................................................................ACAAGCTGCGCCTGTTGGAAA....	21	1	1.00	1	0	1	0	0
.................................................................................................................................................................................................................................................................................................................................................AAACAAGCTGCGCCTGTTGGAAATTGC	27	1	1.00	1	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................GGTACTCTCATTCAAATGGAAA.........................	22	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAAAACAAGCTGCGCC.............	20	1	1.00	1	0	1	0	0
..............................AGACCCGTGCTGACGTTAAGG.........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................CAAATGGAAAACAAGCTGCGC..............	21	1	1.00	1	1	0	0	0
......AGTTTGTCATGGAGGTCACCGAC...............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGCTGCGCCTGTTGGAAAT...	20	1	1.00	1	0	1	0	0
...............................GACCCGTGCTGACGTTAAGGGTG......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................ATTCAAATGGAAAACAAGCTGCGCC.............	25	1	1.00	1	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................ACAAGCTGCGCCTGTTGGAAATT..	23	1	1.00	1	0	1	0	0

dm3

CAGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGAGTT-AT-----------------------------------------------------------------------------------------------AGTTGT------------GATAT--------------------------------------ATTATTACT-----A-AA------------ATTTAATACT--TAA----------------------------------------CTTTTTTTTCCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGTTGGAAATTGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................................................................................................................................................................................................................................................................................................................................................ACAAGCTGCGCCTGTTGGAA.....	20	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................AAATGGAAAACAAGCTGCGCC.............	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AACAAGCTGCGCCTGTTGGAAATTGC	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................CAAATGGAAAACAAGCTGCGC..............	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AGCTGCGCCTGTTGGAAAT...	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TGGTACTCTCATTCAAAT..............................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.....................................................................................................................................................................................................................................................................................................................................................AAGCTGCGCCTGTTGGAA.....	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................................................................................CTCATTCAAATGGAAAACAA.....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAAAACAAGCTGCGCCTGTTG........	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAGACCCGTGCTGACGTT.............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................TCACCGACAAGACCCGTGCTGACGTT.............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AGTGGAGTTTGTCATGGAGGTCAC...................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........TTTGTCATGGAGGTCACT..................................................................................................................................................................................................................................................................................................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAAAACAAGCTGCGATC............	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CTGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGCGAT-AT-----------------------------------------------------------------------------------------------AGTTG-------------GACAT--------------------------------------ATTTCTAAT-----A-CA------------ATTTAATACT--CAAT--------------A-AT--------TTGG-G--TC---TTCTTTTTTCCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGTCTGCTGGAAATTGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................................................................................................................................................................................................................................................................................................................................AATGGAAAACAAGCTGCGTCTGCTGGAA.....	28	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAAAACAAGCTGCGTCTGC..........	23	1	1.00	1	0	0	0	0	0	1	0
.............................AAGACCCGTGCTGACGTT.............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
............................CAAGACCCGTGCTGACGTTAAGG.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.....GAGTTTGTCATGGAGGTCA....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
......................CACCGACAAGACCCGTGCTG..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...............................GACCCGTGCTGACGTTAAGGTGC......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAAAACAAGCTGCGTC.............	20	1	1.00	1	0	0	0	0	0	1	0
....GGAGTTTGTCATGGAGGTCACCGACA..............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..GTGGAGTTTGTCATGGAGGTC.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................................................................................TCAAATGGAAAACAAGCTGCGTC.............	23	1	1.00	1	1	0	0	0	0	0	0
..GTGGAGTTTGTCATGGAGGTCACC..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CATTCAAATGGAAAACAAGCTGC................	23	1	1.00	1	0	0	0	0	0	1	0
.TGTGGAGTTTGTCATGGAGGTCACCGA................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGCTGCGTCTGCTGGAAAT...	20	1	1.00	1	0	0	0	0	0	1	0

droYak3

CTGTGGAGTTTGTCATGGAGGTCACTGACAAGACCCGTGCTGACGTTAAGGTGAGATTAT-----------------------------------------------------------------------------------------------AGTTG-------------GACAA--------------------------------------ATTTGTAAT-----A-CA------------ATTGAATACT--TAAT--------------A-AT--------TTGT-T--TC--TTATTTTTGTTCAGGGTGGTACTCTCATTCAAATGGAAAACAAGCTGCGCCTGCTGGAAATTGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..GTGGAGTTTGTCATGGAGGTCACT..................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................ACAAGCTGCGCCTGCTGGA......	19	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAAAACAAGCTGCGCC.............	20	1	2.00	2	0	0	0	0	0	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TTCAAATGGAAAACAAGCTGCGCCT............	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GTGGAGTTTGTCATGGAGGTCACTGACA..............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................GACAAGACCCGTGCTGACGTTAAGGGT.......................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............TCATGGAGGTCACTGACAAGACC.........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.TGTGGAGTTTGTCATGGAGGTCACTGACA..............................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................AAACAAGCTGCGCCTGCTGGAAATTGC	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GTGGAGTTTGTCATGGAGGTCACTGACAA.............................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........TTTGTCATGGAGGTCACTG.................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATGGAAAACAAGCTGCGCC.............	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................TCACTGACAAGACCCGTGCT...................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..GTGGAGTTTGTCATGGAGG.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..GTGGAGTTTGTCATGGAGGT......................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................CCCGTGCTGACGTTAAGGGTG......................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

CCGTGGAGTTTGTCATGGAGGTCACCGATAAGACCCGTGCTGACGTTAAGGTGAGAT-TT-----------------------------------------------------------------------------------------------TGTTGAGGAAAGTGTAAGGAAAA--------------------------------------ATC--------------AT------------TTTAATACA------------------------------------------TTTTTCATTTTTCTAGGGTGGTACTCTCATCCAAATGGAGAACAAGCTGCGACTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGATGTTAAGGTGAGGG-AT--------------------------------------------------------------------------TGCTGCATATAATA--TACATAGTGG-------------GGTAA--------------------------------------AG----------------------------------A------AAT--------------A-TA--------TTGA-T--TT--TTTTCTTCTCCCAGGGTGGTACTCTCATTCAAATGGAGAACAAGCTGCGTCTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CTGTGGAGTTTGTGATGGAGGTCACCGACAAGACCCGTGCTGATGTTAAGGTAGGAA----------------------------------------------------------------------------------------------------------------------TAT--------------------------------------TTTCTTAAT-----A-AT------------ATATAATAAT-ATAAT--------------A-AT--------TTGT-T--T-----GCTTTCCCCCAGGGTGGTACTCTCATCCAAATGGAGAACAAGCTGCGCCTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGTGGAGTTTGTCATGGAGGTCACCGACAAGACCCGTGCTGACGTGAAGGTGGGAT-AT-----------------------------------------------------------------------------------------------AATTA-------------AAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TATT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A-TT------------ATATTGTACCTATTAT--------------A--A--------TTG--A--TTTTTATCTTCCATGCAGGGTGGTACCCTCATCCAAATGGAGAACAAGCTGCGCTTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCGTGGAATTTGTGATGGAGGTCACTGACAAGACCCGTGCTGACGTTAAGGTAAGAG--------------------TTGTGCAGGAAATGTTGAAGTATAAATGGTATTAAGATGTTATAGTGAGATAACGATTACTGTATAAAATCACTACATCG--------------AGAAATATTTATAAAACTGATTCCGTATTTGTTGATTAATTTGTAATT-G--ATTTGTTT-----------------T--TA------------------ATTTA------A--------A-T--T-----CTTTTATTCCAGGGTGGTACTCTCATCCAAATGGAGAACAAGCTGCGACTGTTGGAAATCGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTGAA----------------------------------ATGATATCAAATTATGAG--------------------T---------CAT-----------------------------------------------------------------ATTTG-------------TGAAT--------------------------------------AT------CTAAAT-------T-TTCTTTT------------------------------TTTTTTAATAATTTATTTCCCC--TCTTTCTCTTGCAGGGTGGTACCCTCATCCAAATGGAGAACAAACTGCGACTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAGTGGAGTTCGTTATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGGGTC-TC-----------------------------------------------------------------------------------------------TGCC----TAAACTTATT---------------------------------------------------------A-AA------------ATATTT---------GAACTAATGTGATAA--------------AA-T--T-----CTACTCTTTCAGGGTGGTACTCTCATCCAAATGGAGAACAAACTGCGCCTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..........................................................................................................................................................................................................................................................................................................................................AAATGGAGAACAAACTGCGCC.............	21	1	2.00	2	1	0	0	0	1	0
..........................GACAAGACCCGTGCTGACGTTAAGGGT.......................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
..GTGGAGTTCGTTATGGAGG.......................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	2	0
.......................................................................................................................................................................................................................................................................................................................................................ACTGCGCCTGCTGGAAATC..	19	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CAAACTGCGCCTGCTGGAAAT...	21	1	1.00	1	1	0	0	0	0	0
.............................AAGACCCGTGCTGACGTTAAGGGT.......................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..............................AGACCCGTGCTGACGTTAAGGGT.......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.......................ACCGACAAGACCCGTGCTGACG...............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..........CGTTATGGAGGTCACCGACAA.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGGAGAACAAACTGCGCCTGCTGGAAAT...	28	1	1.00	1	1	0	0	0	0	0
...........GTTATGGAGGTCACCGACAAGACC.........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
...........GTTATGGAGGTCACCGACAAGACCC........................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AACAAACTGCGCCTGCTGGA......	20	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................ATGGAGAACAAACTGCGCCTGCTG........	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................AGAACAAACTGCGCCTGCTG........	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGGAGAACAAACTGCGCCTGCT.........	22	1	1.00	1	1	0	0	0	0	0
..........................GACAAGACCCGTGCTGACGT..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................CCGACAAGACCCGTGCTGACGTTAAG..........................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GGAGAACAAACTGCGCCTGCTGGAA.....	25	1	1.00	1	0	0	0	0	0	1
..GTGGAGTTCGTTATGGAGGTCACCGACA..............................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................GAACAAACTGCGCCTGCTGGAAATCG.	26	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................CTCATCCAAATGGAGAACAAACTGCGCC.............	28	1	1.00	1	1	0	0	0	0	0
.............................AAGACCCGTGCTGACGTTAAG..........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................ACTGCGCCTGCTGGAAATCGC	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................ATCCAAATGGAGAACAAACTGCGCCT............	26	1	1.00	1	1	0	0	0	0	0
......................CACCGACAAGACCCGTGCTG..................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TCCAAATGGAGAACAAACTGCGCCT............	25	1	1.00	1	1	0	0	0	0	0
.......................ACCGACAAGACCCGTGCTGACGTTAAG..........................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....GGAGTTCGTTATGGAGGTC.....................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.............TATGGAGGTCACCGACAAGACCCGTGC....................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
..GTGGAGTTCGTTATGGAG........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0
...............................GACCCGTGCTGACGTTAAG..........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
..GTGGAGTTCGTTATGGAGGTCACC..................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................AAACTGCGCCTGCTGGAAATCG.	22	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AACTGCGCCTGCTGGAAA....	18	1	1.00	1	1	0	0	0	0	0
....GGAGTTCGTTATGGAGGT......................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0

droBip1

CAGTGGAGTTCGTTATGGAGGTCACCGACAAGACCCGTGCTGACGTTAAGGTGGGTC-TC-----------------------------------------------------------------------------------------------TCCT----AAAATGTATGGAAGT--------------------------------------AT------TA-----------------------------------AAATTAATGTTTTAA--------------AA-T--C-----CAACTATTTCAGGGTGGTACTCTCATCCAAATGGAGAACAAACTGCGCCTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAGTGGAATTTGTCATGGAAGTCACTGACAAGACACGGGCTGATGTCAAGGTGGGAA--------------------AGGCACAACGATTGTTC-----------------------------------------------------------------------------AGCCA---------------------------------------------------------------------------AAACC--TTAT--------------AATT--------T-CGGC--TATTTTTTTCCCCTTCAGGGTGGCACTCTCATACAGTTCGAGAACAAGCTGCGGCTGCTGGAAATTGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................GTCACTGACAAGACACGGGCTG..................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CGAGAACAAGCTGCGGCTGCT.........	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..GTGGAATTTGTCATGGAAG.......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..GTGGAATTTGTCATGGAAGTC.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
CAGTGGAATTTGTCATGGAAGT......................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................AAGACACGGGCTGATGTC.............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................GTTCGAGAACAAGCTGCGGCT............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......ATTTGTCATGGAAGTCACTGACA..............................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................ACTGACAAGACACGGGCTGATG...............................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................TGACAAGACACGGGCTGATGTCAAG..........................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CTCATACAGTTCGAGAACA......................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................ACTGACAAGACACGGGCTG..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................AGGGTGGCACTCTCATACA.................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................GACAAGACACGGGCTGATGT..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGGGTGGCACTCTCATACAGTTC.............................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................TCGAGAACAAGCTGCGGCTGCT.........	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...TGGAATTTGTCATGGAAGT......................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGTGGCACTCTCATACAGTTCGAGAA........................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AGTTCGAGAACAAGCTGCGGC.............	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CGAGAACAAGCTGCGGCTG...........	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................GAGAACAAGCTGCGGCTGCT.........	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TGGCACTCTCATACAGTTCGAGAACAA.....................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................GTCACTGACAAGACACGGGCC...................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.AGTGGAATTTGTCATGGAAGTCACTGACA..............................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

CAGTGGAATTTGTCATGGAAGTCACTGACAAGACACGGGCTGATGTCAAGGTGGGAA--------------------AGGCACAACAATTGTTC-----------------------------------------------------------------------------AGCAA---------------------------------------------------------------------------AAACC--TTAT--------------AATT--------T-CGGC--TATTTTTTTCCCCTTCAGGGTGGCACTCTCATACAGTTCGAGAACAAGCTGCGGCTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................TCACTGACAAGACACGGGCT...................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGGGTGGCACTCTCATACAGT...............................	21	1	2.00	2	0	2	0	0	0	0
..........................GACAAGACACGGGCTGATGT..............................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
.......ATTTGTCATGGAAGTCACTGACA..............................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0
...TGGAATTTGTCATGGAAGTC.....................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
..................................................................................................................................................................................................................................................................................................................................TCTCATACAGTTCGAGAACAAGCTGC................	26	1	1.00	1	0	1	0	0	0	0
..........................GACAAGACACGGGCTGATGTC.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.................GAAGTCACTGACAAGACACG.......................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................AGTTCGAGAACAAGCTGCGGCT............	22	1	1.00	1	0	1	0	0	0	0
..GTGGAATTTGTCATGGAAGTC.....................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droWil2

CAGTTGAATTCGTTATGGAGGTCACTGATAAAACGCGTGCTGATGTTAAGGTAAACC-CCTCCCTCTCCTCTCAAAAT---------CAA-----------------------------------------------------------------ATATG-------------AGATT--------------------------------------G------TTATGAT-------A-ATCTTTC------------------------------TTCTATACAAATA-----------TGTCTTTATAATAGGGTGGCACACTTATACAATTTGAGAATAAGCTACGCCTATTGGAAATTGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......ATTCGTTATGGAGGTCACT..................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	3	0
.............................................................................................................................................................................................................................................................................................................................................TTGAGAATAAGCTACGCCT............	19	1	2.00	2	0	0	0	2	0
.AGTTGAATTCGTTATGGAGGTCA....................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0
...............TGGAGGTCACTGATAAAACGC........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................AGCTACGCCTATTGGAAAT...	19	1	1.00	1	0	0	0	1	0
..........................GATAAAACGCGTGCTGATGT..............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................GATAAAACGCGTGCTGAT................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
CAGTTGAATTCGTTATGGAG........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..............ATGGAGGTCACTGATAAAACGCGTGCT...................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0
..........................GATAAAACGCGTGCTGATGTT.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..............ATGGAGGTCACTGATAAAAC..........................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
..............ATGGAGGTCACTGATAAAACGC........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...........GTTATGGAGGTCACTGATAAAACGCGT......................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................TTTGAGAATAAGCTACGCCTAT..........	22	1	1.00	1	0	0	0	1	0
............TTATGGAGGTCACTGATAAAAC..........................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
..GTTGAATTCGTTATGGAG........................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
..................AGGTCACTGATAAAACGC........................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
............TTATGGAGGTCACTGATAAAACGC........................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AAGCTACGCCTATTGGAAAT...	20	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................AAGCTACGCCTATTGGAAATTG.	22	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................ATTTGAGAATAAGCTACGCCT............	21	1	1.00	1	0	1	0	0	0
.....GAATTCGTTATGGAGGTCACTG.................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................AAGCTACGCCTATTGGAAATTGC	23	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................ATTTGAGAATAAGCTACGCC.............	20	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................TAAGCTACGCCTATTGGAAATTGC	24	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................TTTGAGAATAAGCTACGCCTATTGGAAA....	28	1	1.00	1	0	0	0	1	0
..............................AAACGCGTGCTGATGTTAAGGGT.......................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...................GGTCACTGATAAAACGCG.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0

droVir3

CATTCGAGTTCGTCATGGAGGTCACCGACAAGACCCGTGCTGATGTCAAGGTGGCTC--------------------CAGTG-----------C-----------------------------------------------------------------------------AGCAA-A--------------------------------------ACT-G--TTTTGTGT----------------GT--GA------------------ATACA------T---------------ATTCTCTCCTTTGTAGGGTGGCACGCTCATACAAATGGAGAACAAGTTGCGCCTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................CACCGACAAGACCCGTGCT...................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CACCGACAAGACCCGTGCTGATGT..............................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................TACAAATGGAGAACAAGTTGCGCC.............	24	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGGGTGGCACGCTCATACA.................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................CTCATACAAATGGAGAACAAGT...................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................GACCCGTGCTGATGTCAAGGGT.......................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......AGTTCGTCATGGAGGTCACCGACA..............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................AGGGTGGCACGCTCATACAAA...............................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGACCCGTGCTGATGTCA............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GACAAGACCCGTGCTGATGTCAA...........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GGTGGCACGCTCATACAAATGGAGAACA......................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAGAACAAGTTGCGCCT............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................CAAGACCCGTGCTGATGTCA............................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................CCGACAAGACCCGTGCTGAT................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGGAGAACAAGTTGCGCC.............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATTCGAGTTCGTCATGGAGGT......................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAGACCCGTGCTGATGTC.............................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................GGAGAACAAGTTGCGCCTGCTGGA......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................GTGGCACGCTCATACAAATGGA...........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
CATTCGAGTTCGTCATGGAG........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................A------------------ATACA------T---------------ATTCTCTCCTTTGT....................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAGAACAAGTTGCGCC.............	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................ACAAGACCCGTGCTGATGTCAAG..........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................ACCGACAAGACCCGTGCTG..................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CATGGAGGTCACCGACAAG............................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........GTCATGGAGGTCACCGACAA.............................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................TGGAGAACAAGTTGCGCCTGC..........	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAGAACAAGTTGCGCCTGC..........	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CATGGAGGTCACCGACAAGACCC........................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CCCGTGCTGATGTCAAGGGT.......................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CATACAAATGGAGAACAAGTTGCGCCT............	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................AATGGAGAACAAGTTGCG...............	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................GACAAGACCCGTGCTGATGTC.............................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................CTGATGTCAAGGTGGCTC--------------------CAG............................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CGTCATGGAGGTCACCGACAA.............................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................AAGACCCGTGCTGATGTCA............................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.ATTCGAGTTCGTCATGGAGGTCA....................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................AGACCCGTGCTGATGTCAA...........................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CCTTCGAATTCGTCATGGAGGTGACCGACAAGACCCGTGCTGATGTCAAGGTAACTA--------------------AGGTGCTGAGGCTG------------------------------------------------------------------------------------------------------------------------------------TCCTGTCAGCATACTC-------A---T---------AT--------------A-CT---------------------CTGTCCTTTTTAGGGTGGCACGCTCATCCAAATGGAGAACAAGCTGCGACTGCTGGAAATTGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................................................................................................................................................ATACTC-------A---T---------AT--------------A-CT---------------------CTGTCCTTTTTA...................................................	25	1	1.00	1	0	0	0	0	1	0

droGri2

CCCCAGAATTCGTTATGGAGGTCACCGACAAGACCCGTGCTGATGTTAAGGTATCCC--------------------C---------AATCCTC-----------------------------------------------------------------------------AGCAACA--------------------------------------ACT--------------ATATTC-------ATATTGT------------------ATTCA------AAT---G----C--C-----GTCGTTTTTTAGGGTGGTACTCTTATTCAAATGGAGAACAAGCTGCGCTTGCTGGAAATCGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................................................................................................................................................................................................................................................AATGGAGAACAAGCTGCGCTT............	21	2	0.50	1	0	1
........................................................................................................................................................................................................................................................................................................................................................CTGCGCTTGCTGGAAATCGC	20	2	0.50	1	0	1
....................................................................................................................................................................................................................................................................................................................................................CAAGCTGCGCTTGCTGGAA.....	19	2	0.50	1	1	0

dsi_9439

3l:9120405-9120470 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-4.1	-4.0	-3.3