ID:

dsi_9426

 Coordinate:

2r:5316586-5316735 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-26.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CTCGTGGTTGGATCTCAATCCGGAGGACCAAATGCGTGTAGCCACATCCTTGCTAACTGGTCTGGAATACAATGCCTTTCTGCTGGCGGATACGATTATCAGGGAGCGCAGTGTGGTGCAAAAAGTCAAAAATATATGTGAGTTCTAAATGTTAGCATTGTTTGCATTTCAAAATACTTATAAAAAACTTTATATCATAGTACTCTCCGTTCGAGTGCTGGAAACCAAGACCATTCAGTCCAGCGTGGTC
**************************************************.....(((....((...((((.((((((((((.(((((....)).))).))))))).))).))))...))...)))..........(((((((...((((((.(((...))).))))))......)))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 M025
embryo
................AATCCGGAGGACCGA........................................................................................................................................................................................................................... 15 1 5 3.60 18 0 4 5 0 9 0 0 0 0 0 0 0
................AATCCGGAGGACCGAA.......................................................................................................................................................................................................................... 16 1 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0
.....................GGAGGACCGAACCCGTGTA.................................................................................................................................................................................................................. 19 3 10 1.70 17 0 0 0 0 0 13 0 4 0 0 0 0
.............................................................................................GATTATCAGGGAGCGCAGTGTGGTG.................................................................................................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................AATCCGGAGGACCGAAT......................................................................................................................................................................................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................GCGGATACGATTATCAGGGAGCGC............................................................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
.....................................................................................................GGGAGCGCAGTGTGGTGCAAAAA.............................................................................................................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................TCTCCGTTCGAGTGCTGGA............................ 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
....................................................................................................AGGGAGCGCAGTGTGGTGCAA................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
................AATCCGGAGGACCGAATG........................................................................................................................................................................................................................ 18 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................ATACGATCATCAGGGAGCG.............................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTCCGTTCGAGTGCTGGAAACC........................ 22 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...............CAATCCGGAGGACCAAATGC....................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................ATCAGGGAGCGCAGTGTG....................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGTTCGAGTGCTGGAAACCAAGACCATT............... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................................CACATCCTTGCTAACTGGTCT........................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................GGAGGACCAAACCCGTGTA.................................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...TTGGTTGGATCTCAATCCGGAGGACCAAA.......................................................................................................................................................................................................................... 29 1 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................TACGATTATCAGGGAGCGCAGTGTGG...................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..........................ACCAATTGGGTGTAGCTAC............................................................................................................................................................................................................. 19 3 19 1.00 19 0 0 0 0 0 0 11 1 0 0 0 7
......................................................................AATGCCTTTCTGCTAGCGGAT............................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
................AATCCGGAGGACCGAG.......................................................................................................................................................................................................................... 16 2 20 0.85 17 0 0 9 0 8 0 0 0 0 0 0 0
.................ATCCGGAGGACCGAGTGC....................................................................................................................................................................................................................... 18 2 10 0.60 6 1 1 2 0 1 0 0 1 0 0 0 0
................AATCCGGAGGACCGAGT......................................................................................................................................................................................................................... 17 2 18 0.56 10 0 2 8 0 0 0 0 0 0 0 0 0
.........................GACCAATTGGGTGTAGCTAC............................................................................................................................................................................................................. 20 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
...................CTGGAGGACCGAATCCGTGT................................................................................................................................................................................................................... 20 3 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0 0
........................GGACCAATTGGGTGTAGCTAC............................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
.................ATCCGGAGGACCGAATGCC...................................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0 0
................AATCCGGAGGACCGAGTGCCT..................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0 0 0
.................ATCCGGAGGACCGAA.......................................................................................................................................................................................................................... 15 1 7 0.29 2 0 0 0 0 2 0 0 0 0 0 0 0
CTCGTAGTTGGATCTCG......................................................................................................................................................................................................................................... 17 2 14 0.29 4 0 0 1 0 3 0 0 0 0 0 0 0
CTCGTAGTTGGATCT........................................................................................................................................................................................................................................... 15 1 10 0.20 2 0 1 1 0 0 0 0 0 0 0 0 0
CTCGTAGTTGGATCTC.......................................................................................................................................................................................................................................... 16 1 5 0.20 1 0 0 1 0 0 0 0 0 0 0 0 0
...............AAATCCGGAGGACCGAGTGC....................................................................................................................................................................................................................... 20 3 11 0.18 2 0 0 0 0 1 1 0 0 0 0 0 0
.................ATCCGGAGGACCGAGTGCCT..................................................................................................................................................................................................................... 20 3 11 0.18 2 0 2 0 0 0 0 0 0 0 0 0 0
.................ATCCGGAGGACCGAGTG........................................................................................................................................................................................................................ 17 2 20 0.15 3 0 0 3 0 0 0 0 0 0 0 0 0
.TCGTAGTTGGATCTC.......................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................AATTGGGTGTAGCTACATCC......................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0 0 0
...............AAATCCGGAGGACCGAA.......................................................................................................................................................................................................................... 17 2 15 0.13 2 0 0 2 0 0 0 0 0 0 0 0 0
................AATCCGGAGGACCGAGTGCC...................................................................................................................................................................................................................... 20 3 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
..................TCCGGAGGACCGAGTGC....................................................................................................................................................................................................................... 17 2 18 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
..............TAAATCCGGAGGACCG............................................................................................................................................................................................................................ 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
..................TCCGGAGGACCGAGTGCCT..................................................................................................................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

GAGCACCAACCTAGAGTTAGGCCTCCTGGTTTACGCACATCGGTGTAGGAACGATTGACCAGACCTTATGTTACGGAAAGACGACCGCCTATGCTAATAGTCCCTCGCGTCACACCACGTTTTTCAGTTTTTATATACACTCAAGATTTACAATCGTAACAAACGTAAAGTTTTATGAATATTTTTTGAAATATAGTATCATGAGAGGCAAGCTCACGACCTTTGGTTCTGGTAAGTCAGGTCGCACCAG
**************************************************.....(((....((...((((.((((((((((.(((((....)).))).))))))).))).))))...))...)))..........(((((((...((((((.(((...))).))))))......)))))))..................************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M023
head
................................................................................................ATGGTCCCCCGCGTTACAC....................................................................................................................................... 19 3 13 0.15 2 1 1 0
..................................................................................................AGTCCCTAGCGTCATACCG..................................................................................................................................... 19 3 18 0.06 1 0 0 1

Generated: 04/23/2015 at 12:56 PM