ID:

dsi_9413

 Coordinate:

3l:2906169-2906328 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [3l_2906329_2906767_+]; CDS [3l_2906329_2906767_+]; exon [3l_2905988_2906168_+]; CDS [3l_2905988_2906168_+]; intron [3l_2906169_2906328_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACAGCAACCACTGCATCTACCAGTCCTACCTCCAAAGAATCCCCGAACAGGTAGGTAAATAGATCTACAGCCCATCAAAGTTAGGAATAGATCATAAACTGCGTATATACCGCTGACGAAACTCTTGCTATTCTGTCGTGAGCTAATCGATTACCTCGTTTCCTTCACCGCCATTTATTGTTACCTCTGTTTTGCTCCGCTCTTTCGCAGAGAGTACCAGACGGACGCTTCAGCAGCGGCGGCGACCCGTCGTGAACGCC
**************************************************((((((......))))))(((....((.((.(((.(((((((........(((.......))).((((((..........))).)))(((((.....(((.....))).....)))))....))))))).))).)).))....)))..((......))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
......................................................................................................................................................................................................................TACCAGACGGACGCTTCAGCAGCGGC.................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................CTCTGTTTATTCTGTCGTGAG...................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................TTACCTCTGTTCTGCT................................................................ 16 1 2 0.50 1 1 0 0 0 0 0 0
..........................................................AGAGTTCTACAGTCCATCAAA..................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................................GTCTTTCGCAGAGAGT............................................. 16 1 3 0.33 1 0 0 0 0 1 0 0
.......................................................................................................................................................................CCGCCATTTGCTGTTCCCTCT........................................................................ 21 3 7 0.29 2 0 0 2 0 0 0 0
..........................TACATTCAAAGAGTCCCCGA...................................................................................................................................................................................................................... 20 3 4 0.25 1 0 1 0 0 0 0 0
......................................................................................................................................................................................ACCTCTGTTCTGCTC............................................................... 15 1 13 0.23 3 3 0 0 0 0 0 0
..........................................................................................................................................................................................................TTTTGCAGAGAGTACCA......................................... 17 1 6 0.17 1 1 0 0 0 0 0 0
..........................................................................................................................................................CTCGTATCCTTCACC........................................................................................... 15 1 6 0.17 1 0 0 1 0 0 0 0
..............................................................................................................................GCAATTCTGTCGTGAGACA................................................................................................................... 19 3 9 0.11 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................................GGGTCCCATCGTGAACGCC 19 3 9 0.11 1 0 0 0 0 0 1 0
........................................................................................................................................................................................................TCTTTCGCAGAGAGG............................................. 15 1 11 0.09 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................CTTCAGCAGCGGCGGCGG............... 18 1 13 0.08 1 0 0 0 0 0 0 1
.....................................................................GCCCATCAATGTTACGA.............................................................................................................................................................................. 17 2 17 0.06 1 0 1 0 0 0 0 0
......................................................................................................................................................................................ACCTCTGTTCTGCTCCA............................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0
.......................................................................................................................................................TACCTCGATTCCGTCA............................................................................................. 16 2 20 0.05 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................TAGAAGCGGCGTCGACCC............ 18 3 20 0.05 1 1 0 0 0 0 0 0
....................................................................................................................................CTGTCGCGAGCTAAGC................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................GACCCGTCTTGAACAC. 16 2 20 0.05 1 0 0 0 0 0 1 0

Anti-sense strand reads

TGTCGTTGGTGACGTAGATGGTCAGGATGGAGGTTTCTTAGGGGCTTGTCCATCCATTTATCTAGATGTCGGGTAGTTTCAATCCTTATCTAGTATTTGACGCATATATGGCGACTGCTTTGAGAACGATAAGACAGCACTCGATTAGCTAATGGAGCAAAGGAAGTGGCGGTAAATAACAATGGAGACAAAACGAGGCGAGAAAGCGTCTCTCATGGTCTGCCTGCGAAGTCGTCGCCGCCGCTGGGCAGCACTTGCGG
**************************************************((((((......))))))(((....((.((.(((.(((((((........(((.......))).((((((..........))).)))(((((.....(((.....))).....)))))....))))))).))).)).))....)))..((......))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
............CGGAAATGGTCAGGATGCAGGT.................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................CGTCTCTCATGGTCTGCCTGCGAAG............................. 25 0 1 1.00 1 1 0 0 0 0 0 0
............................................................TCTACATGGCGGGCAGTTTC.................................................................................................................................................................................... 20 3 3 0.33 1 1 0 0 0 0 0 0
...........................TGGAGCTTTCTTAGGG......................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................ATGGAGACAAAACGA................................................................ 15 0 3 0.33 1 0 0 0 1 0 0 0
..TAGTTGGTGACGTAGAGTGT.............................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................GTCTGCCTTCAAAGTCGTCGT...................... 21 3 7 0.14 1 0 0 1 0 0 0 0
.......................................AGGGGCTTGTCGATCAA............................................................................................................................................................................................................ 17 2 8 0.13 1 0 0 0 0 1 0 0
............................................................................................................TTGCGACTGCTTTGA......................................................................................................................................... 15 1 10 0.10 1 0 0 0 0 0 0 1
..........................................................................................................................................................................................................AAAGCAGCTCTCATGGT......................................... 17 2 12 0.08 1 0 0 0 1 0 0 0
................................................................GATGTCGGGTCGTTTC.................................................................................................................................................................................... 16 1 20 0.05 1 0 0 0 0 0 1 0
.......................AGGATGGAGGTTGCC.............................................................................................................................................................................................................................. 15 2 20 0.05 1 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:2906119-2906378 + dsi_9413 ACAGCAACCAC---TGCATCTACCAGTCCT----ACCTCCAAA------------GAATCCCCGAACAGGTAGGTAA-------------------------------------------------------------------------ATAGATCTACAGCCCA-------------T-------------------------------------------------------CAAAGTTAGGAATAGATCATAAACTGCGTATATACCG------CTGACGAAACT-----C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTATTCTGTC--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------CGTTTCCT-----------------------------TCACCGCCATTTAT---TGT----TACCTCTGTTTTGCTCCGCTCTTTCG---CAGAGAGTACCAGACGGACG--------------------------------------------------------------CTTCA------------------GCAGCGGCG---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GTGAACGCC
droSec2 scaffold_2:3042073-3042332 + ACAGCAACCAC---TGCATCTACGACTCCT----ACCTCCAAA------------GAATCCCCGAACAGGTAGGTAA-------------------------------------------------------------------------ATAGATCTACAGCCCA-------------T-------------------------------------------------------CAAAGTTAGGAATAGATCATAAACTGCGTATATACCG------CTGACGAAACT-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATATTCTGTC--GTGAGCTAATC-GATTACAT------------------------------------------------------------------------------CGTTTCCT-----------------------------TCGCCACCATTTAT---TGT----TACCTCTGTTTTGCTCCGCTCTTTCG---CAGAGAGTACCAGGCGGACG--------------------------------------------------------------CTTCA------------------GCATCGGCG---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GTGAACGCC
dm3 chr3L:3037912-3038175 + ACAGCAACCAC---TGCATCTACAAGTCCT----ACCTCCAAA------------GAATCCCCAAACAGGTAGGTAA-------------------------------------------------------------------------ATCGATTTGCAACCCA-------------T-------------------------------------------------------CAAAGTTAGGAATAGATCATAAACTGCGTATATACCT------CTAACGAAACT-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATATTCTGTC--GTGAGCTAATCTCGTTACCT------------------------------------------------------------------------------CGTTTCCT-----------------------------TCACCGTTTATTAT---TAT----TATCTCTGTTTTGCTCCGCTCTTTCG---TAGAGAG------GCGGACG--------------------------------------------------------------CCTCA---------GCAGCAGCAGCGGCGGCG---------------------------------------GCGACACG---------AC------------------------------------------------------------------------------GTGAACGCC
droEre2 scaffold_4784:3055786-3056065 + ACAGCAACCAC---TGAATCTACAAGTCCT----ACCTCGAAA------------GAATCCCCGAACAGGTAGGTAA-------------------------------------------------------------------------A-----GTACAGCAG---------------------------------------------ACACTCAATCGATT-TAAGTACCACTTAAATAAGCAATAGATCATAAACTG----TATACCT------CTGACGAAAATGATT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATATTCTGCT--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------CGTTTATT-----------------------------TCTCGGCCATTTAT---TGT----TCCATCTGTTTTGCTCCGCTCTTTCG---CAGAGAGCAACAGACGGACG--------------------------------------------------------------CATCA---------------GCAGCAGCAGCG---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GTGAACGCC
droYak3 3L:8899418-8899670 - ACAGCAACCCC---TGCATCTACGAGTCCT----ACCTCGAAA------------GAATCCCCGAACAGGTAGGA---------------------------------------------------------------------------ATAGATCAGGA------------------------------------------------------------------------------ATCAGGAATAGATCATAAACTGTGTATATACCT------TTGACGAAACTGCTTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATATTCTGTC--GTGAGCTAATC-GGTTATCT------------------------------------------------------------------------------GTTTTCTT-----------------------------TCGCCGCCATTTAT---TGT----TACCTCTGTTTTGATCCGCTCCTTCG---CAGAGAGCAGCAAGCGGACG--------------------------------------------------------------CCTCA------------------GCAGCAGCA---------------------------------------GCGACCCG---------AC------------------------------------------------------------------------------GTGAACGCC
droEug1 scf7180000409032:909450-909663 - GCAGCAGCAGC---AGCAAGCGCAACACCA----GCAGCAGCA------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---AGT----TGCA---G--------------------------------------TT-----------------------------------------------------------------GCA------------GCAACAGCAGCAGCAGCATAGCTCGAACAATTTGATTGTGGGCCATCGGGGCAGCTCTTCTGTTCAAGGACGCCTGAGCTCTGCTGTATTTAGCCCCATCTCGCTGCCCTCCTCGTTGCAGAGTTCCTTTGATGGCGACACCAACTCGGTGATGACCAAC
droBia1 scf7180000302422:7402818-7403109 + GCAGCAACATC---TGCAACAGCAACACCT----TG------------------------------TAAGCCCGCAGCAAC---ACCTGC-----------------------TCAAGTCGGAGACGCTGCTCTCCCATGAGGAGGATCAGTTGATCAGCAACCTG-------------A------------------------------CCGACGCGTCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCTCGCACA--GCGAACTCTTC-TCGGATCT------------------------------------------------------------------------------CTTCTTCC---CCTCTGACTCGAACAACTCCCTGCTCT----------------------------------------------------CCCCGACCACCAGTGGCTAT-----CCGGAAAATCCCGCCGAGGACCTCACCAGCTCCATTGAGAATCTCACCAAGTTGACTTGCCT------------------GCGGGACAA---------------------------------------GCGGCTTT---------CC------------------------------------------------------------------------------TCAATCCCC
droTak1 scf7180000415378:391910-392099 - GAACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTATCTGTATCTCAGAAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTGTC--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------TGTTTTCT-----------------------------TCTCTTCCATTTCT---CGTTTACCGTGTGTGTTTTGCTCTACTGTTTCG---CAGAGAGCAACAGGCGGACG--------------------------------------------------------------CCTCAGCAGCAGCGGCAGCAGCAGCAGCAGCG---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GCGAACGCC
droEle1 scf7180000491044:1383796-1384020 - -CAGCAATCGG-----TATCGCCCACACCT----GCAGTCAAG------------GTGTTC-----------------------------------------------------------------------------------------------------------------------------------------------CATCAGCTGAGCCATCCGTT-GGTGCATCAA-----------------------TTG------CAT------CACCATCA-TGCC-----GCCGCAGTGCATCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC--ATGGAC---------------------------------------------------------------------------------------------------------------ATGGACACCATGCTGCCGCTGCCGCCCATCAT---CAT----CACCATCACCAT----CATGCTGCGG---CAGC-AG---------------------------------------------------------------------------CAGCAGCAGCGGCGGCAGCAGCAGCGGCAGCA---------------------------------------GCGGCCCA---------CC------------------------------------------------------------------------------ATC-ATGCC
droRho1 scf7180000779543:18362-18521 + ATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTCGACTGTGTGTGTATCTCAGAAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTGTT--GTGAGCTAATC-GCCTATCG------------------------------------------------------------------------------T--TTCTT-----------------------------T------TATTTCT---GGT----TACCTGTGTTTTGCTCCGCTGTTTCG---CAGAGAGCAACAGGCGGACT--------------------------------------------------------------CCTCA---------------------GCAGCG---------------------------------------GCCACTCG---------TC------------------------------------------------------------------------------GCGAACGCC
droFic1 scf7180000454105:1357655-1357891 + ACGGCAATAGC---TATAGCTACAAATCCT----ACCTCTAAA------------GAATCCCCAAACAGGTATACAA--------------------------------------------------------------------------------TACATACCA-------------T------------------------------------------------------------------ATGGCTAATCGACTGCGT-TGTATCTTAGAAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTGTC--GTGAGCTAATC-GATTGCCT------------------------------------------------------------------------------TGCTTTGT-----------------------------TC-CATCCACTTAT---TGC----TACCTGTGTTTTGCTCCGCTCTTTCGCAGCAGAGAGCAACAGGCGGACG--------------------------------------------------------------GCTCA---------------------GCAGCT---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GCGAACGCC
droKik1 scf7180000302461:1649448-1649697 - ACAGTAAAATC---AACAGCAACAACAACAGTTTACATCAATA--------------GTCAGCAAGTAAAGAGGAAG----AGGAGCTGCAGTCGCCGCCGCGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGTTAATGGCATTAACAACAATATCA-GCAGGAGCTGCTGCAGCAGCAACCAC------ATCATCACCAACAATCGAAG--------------------------------------------------------------------------------------------------------------CAGCCG---------------------------------------------------------------CAGCCGCCGCAACA-----CCA-----------------------------ACA--------------------------------TCGGTAACTGCATCT---ACAGCAGCAATAA---------------------------------------------------------------------GATCA------------------GCAGCTGCC--------------GTC----------------------GCC-ATCG---------TT------------------------------------------------------------------------------GCCGCCGAC
droAna3 scaffold_13337:9071432-9071798 - dan_2516 ACAGCAACCATTACTGCATCTTCCGGTCCT----ACCTCTACA------------GAT------AGCAGGTAAACAAGCCATTAACTTTCAAAGGCAGTTCAAGATCGGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAGAAACTC------------------------------------------AAGAAAATATTGTAAAGGAGTTTATG-------------------TAAGTTTTGTAAAAATAATAGTTTTTTTGGTTTATAACTGAAATAAAATATGTTT----CAAGCCTTAGTCTTATAGT-TTCCA-----TGT---CATTTACGAAATTCTCTT--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------TTT----------------------------------------------TT---TGT----TACCTCTGTTTTGCTCCACTCTTTCG---CAGAGAGCAACAAGTGGACGAGTCG------------------------ACCGTCTCCG-----------------------TCTCCGCCGAAGCAGAAGCAGCAGCAGCAGCA---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GCAAACGCC
droBip1 scf7180000391610:19593-19889 - ACAGCAACAATTACTGCATCTTCCGGTCCT----ACCTCCACA------------GAT------AGCAGGTAAACAAGCCC---A------------------GATCGGTTATTTATGCTA------------T-------------------ATGATATAGCCAGTTTAAGTAAGTTTT-------------------------CAAAATTATTATAAAAATTCAAAAAGTGCA-----------------------TCT------TAA------AGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTTTG--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------TTTTT---------------------------------------------------C----TACTTCTGTTTTGCTCCACTCTTTCG---CAGAGAGCAACAAGTGGACGAGTCGTT----------------G------TCGTCGT-------------------------CAGTGGTCTCCGCCGAAGCAGCAGCAGCAGCA---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GCAAACGCC
dp5 XR_group6:9816968-9817214 + ACAGAAATATC------------GAACTCT----ACTTCCAAA------------GAATCACCGAGCAGGTGGATAATCTC---ACTTTT-----------------------ATATGTTA--------------------------------GTTGTACAGCCGA-------------ACCAATGCATGAGGAAAAAATGTTACTTTGATCATTATATCTGTT-AGAGGTTTCA-----------------------CTG------TAC------AATTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTTTT--GTATACTAATC-GATTAGCCG-----------------------------------------------------------------------------T--T---CATT---------------------------------------T---TAT----CGCCTCTGTTTTGGCTTTCTGCTTCT---TAGAGAGCAACAG--------------------------------------------------------------------------------------------------------------------------------------------TCCACTCG---------AC------------------------------------------------------------------------------GTGAACGCC
droPer2 scaffold_61:93046-93292 + ACAGAAATATC------------GAATTCT----ACTTCCAAA------------GAATCACCGAGCAGGTGGATAATCTC---ACTTTT-----------------------ATATGTTA--------------------------------GTTGTACAGCCGA-------------ACCAATGCATGAGGAAAAAATGTTACTTTGATCATTATATCTGTT-AGAGGTTTCA-----------------------CTG------TAC------AATTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTTTT--GTATACTAATC-GATTAGCCG-----------------------------------------------------------------------------T--T---CATT---------------------------------------T---TAT----CGCCTCTGTTTTGGCTTTCTGCTTCT---TAGAGAGCAACAG--------------------------------------------------------------------------------------------------------------------------------------------TCCACTCG---------AC------------------------------------------------------------------------------GTGAACGCC
droWil2 scf2_1100000004511:10914812-10914989 - ACGGCGACAGC---TGCAGGCACATCAACT----ACCTCGAAA------------TCGTCACCAAACAGGTAGGTCG--------------------------------------------ACGTCTGGGTCTCTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT--GTGTGCTAATC-GATTAACA------------------------------------------------------------------------------T--T---TACT---------------------------------------T---TTT----TGTTTTTGTTTTGCTTTCGTCTTTCG---TAGAGAGCAACTGG-----------------------------------------------------------------------------------------CAGCAGCAGCA---------------------------------------GCCACTCG---------GC------------------------------------------------------------------------------GTGAACGCC
droVir3 scaffold_12855:891352-891571 - GCAGCAGCAGC---TGCAATTACAACAGCC----GCAACAGAC------------GCAGTTGTCTACAACAACAATA-------------------------------------------------------------------------GCAGCTCAGCAGCTAC-------------C-------------------------------------------------------CAAAGC-----------------------------ACCAGCAGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGACCGAATT--GAAAGGTAATT-GATTACTT------------------------------------------------------------------------------AAGAATCT-----------------------------GC-----TATTTCCTCTTGC----TAACTCTA---TCCTCTTCCCATTTG---CAGTTACTAACAACAGAAAG-----CT--------------------------------------------------------GTCC------------------ACACCCGCC---------------------------------------GCGC-------------CC------------------------------------------------------------------------------GCCAGCAAT
droMoj3 scaffold_6540:32375327-32375556 - GCAGCAACAAC---AGCCTCAACAACAGCA----AAAGCATCTGCCATTGGCCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATC-TATCGCAT-CGTTTGCAACAGGTGCAGCAGCGTAACGATCCTAGCCATGTGGGCAGCGTGCAAATGCACTCGCTGGCCACGCAGAA-----CCA-----------------------------ACAGCAGCAGCAAC---AGT----TGCATCTG--------------------------------------GC-----------------------------------------------------------------ACA------------GCAGCAGCAGCAGCCGC--------AACAATT---------GCCAGCGGAGCAGCGCAGCGG---------GC------------------------------------------------------------------------------CTAAGCGCT
droGri2 scaffold_15110:20688673-20689023 + ACAACAACAAC---AATAATATCGACAACT----ACCTCAGTCGCCGCTCGGCAAAGGTCACCGCCCAGGTAAATTG-------------------------------------------------------------------------A-------GTAGTCAA------------------------------------------------------------------------TAA-----------------------------AAAAAAAATTT-------------------------------------------------------TTAAAAGTAGGCTAACTGGAAATAAAATTTTGAATATTATTAACAACTAAAGCATTTACAAGTTTTCAGTTTACCTAAAAAGTGCTGTTTGTTAACGTTCGTTGTTCAATTCTCCATTCTACGTTTGTATTTACGAAATGTCGTTGTGTGTGTCAATC-GTTTACCT------------------------------------------------------------------------------TTCGT--TATT---------------------------------------T---TTC----TGTTTCTGTTTTGATCAATTGTTTCGTCGCAGAGAGCAACAGACAAGCG--------------------------------------------------------------CC---------------------GCTGCAGCA---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GTGAACGAC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAGCAACCAC---TGCATCTACCAGTCCT----ACCTCCAAA------------GAATCCCCGAACAGGTAGGTAA-------------------------------------------------------------------------ATAGATCTACAGCCCA-------------T-------------------------------------------------------CAAAGTTAGGAATAGATCATAAACTGCGTATATACCG------CTGACGAAACT-----C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGCTATTCTGTC--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------CGTTTCCT-----------------------------TCACCGCCATTTAT---TGT----TACCTCTGTTTTGCTCCGCTCTTTCG---CAGAGAGTACCAGACGGACG--------------------------------------------------------------CTTCA------------------GCAGCGGCG---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GTGAACGCCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGACGGACG--------------------------------------------------------------CTTCA------------------GCAGCGGC..................................................................................................................................................2611.00100000000001000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTTTCG---CAGAGAGG...........................................................................................................................................................................................................................................................15110.09100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCA------------------GCAGCGGCG---------------------------------------GCGG......................................................................................................18130.08100000000000100000
droSec2
ACAGCAACCAC---TGCATCTACGACTCCT----ACCTCCAAA------------GAATCCCCGAACAGGTAGGTAA-------------------------------------------------------------------------ATAGATCTACAGCCCA-------------T-------------------------------------------------------CAAAGTTAGGAATAGATCATAAACTGCGTATATACCG------CTGACGAAACT-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATATTCTGTC--GTGAGCTAATC-GATTACAT------------------------------------------------------------------------------CGTTTCCT-----------------------------TCGCCACCATTTAT---TGT----TACCTCTGTTTTGCTCCGCTCTTTCG---CAGAGAGTACCAGGCGGACG--------------------------------------------------------------CTTCA------------------GCATCGGCG---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GTGAACGCCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................GACTCCT----ACCTCCAAA------------GAATCCC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGGCGGACG--------------------------------------------------------------CTTCA------------------GCATCGGCG---------------------------------------G.........................................................................................................2811.0010010
dm3
ACAGCAACCAC---TGCATCTACAAGTCCT----ACCTCCAAA------------GAATCCCCAAACAGGTAGGTAA-------------------------------------------------------------------------ATCGATTTGCAACCCA-------------T-------------------------------------------------------CAAAGTTAGGAATAGATCATAAACTGCGTATATACCT------CTAACGAAACT-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATATTCTGTC--GTGAGCTAATCTCGTTACCT------------------------------------------------------------------------------CGTTTCCT-----------------------------TCACCGTTTATTAT---TAT----TATCTCTGTTTTGCTCCGCTCTTTCG---TAGAGAG------GCGGACG--------------------------------------------------------------CCTCA---------GCAGCAGCAGCGGCGGCG---------------------------------------GCGACACG---------AC------------------------------------------------------------------------------GTGAACGCCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........C---TGCATCTACAAGTCCT----ACCTCCAAA------------GAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGGCGGCG---------------------------------------GCGACACG---------AC------------------------------------------------------------------------------GTGA.....2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTCCGCTCTTTCG---TAG................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
....................TACAAGTCCT----ACCTCCAAA------------GAATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AACCAC---TGCATCTACAAGTCCT----ACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G------GCGGACG--------------------------------------------------------------CCTCA---------GCAGCAGC...........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAGTCCT----ACCTCCAAA------------GAATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................CAAACAGGTAGGTAA-------------------------------------------------------------------------ATCGAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAG------GCGGACG--------------------------------------------------------------CCTCA---------GCAGCAGCAG.........................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................AAAGTTAGGAATAGATCATA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCGGCGGCG---------------------------------------GCGACACG---------AC------------------------------------------------------------------------------G........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................TCATAAACTGCGTATATACCT------CTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAGCAGCAGCGGCGGCG---------------------------------------GCGACAC...................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................TCCT----ACCTCCAAA------------GAATCCCCAAACAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAGCAGCAGCGGCGGCG---------------------------------------GCGAC.....................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................ACAAGTCCT----ACCTCCAAA------------GAAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGCAACCAC---TGCATCTACAAGTCCT----ACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................GAAACT-----G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTGATATTCTGTC--G..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................CTACAAGTCCT----ACCTCCAAA------------GAATC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTCTGTTTTGCTCCGCTCTTTCG---T..................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAGTCCT----ACCTCCAAA------------GAATCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCA---------GCAGCAGCAGCGGCGGCG---------------------------------------GC........................................................................................................2420.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCA---------GCAGCAGCAGCGGCGG...................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCA---------GCAGCAGCAGCGGCGGCG---------------------------------------..........................................................................................................2220.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA---------GCAGCAGCAGCGGCGG...................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCGGCGGCG---------------------------------------GCG.......................................................................................................2190.3330000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................AAA------------GAATCCCCAAACAGAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1950.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------GCAGCAGCAGCGGCGGCG---------------------------------------G.........................................................................................................21120.1720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000010000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAGCAGCAGCGGCGGCG---------------------------------------GCG.......................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCGGCGGCG---------------------------------------GCG.......................................................................................................2090.1110000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCGGCGGCG---------------------------------------GC........................................................................................................20190.1120000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCGGCGGCG---------------------------------------GC........................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------GCAGCAGCAGCGGCGGCG---------------------------------------GC........................................................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
droEre2
ACAGCAACCAC---TGAATCTACAAGTCCT----ACCTCGAAA------------GAATCCCCGAACAGGTAGGTAA-------------------------------------------------------------------------A-----GTACAGCAG---------------------------------------------ACACTCAATCGATT-TAAGTACCACTTAAATAAGCAATAGATCATAAACTG----TATACCT------CTGACGAAAATGATT-G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATATTCTGCT--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------CGTTTATT-----------------------------TCTCGGCCATTTAT---TGT----TCCATCTGTTTTGCTCCGCTCTTTCG---CAGAGAGCAACAGACGGACG--------------------------------------------------------------CATCA---------------GCAGCAGCAGCG---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GTGAACGCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GTGAACGC.1911.0010100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG--------------------------------------------------------------CATCA---------------GCAGCAGCAGCG---------------------------------------GC........................................................................................................2111.0010100000
...............................................................................................................................................................................................................................................................AAACTG----TATACCT------CTGACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACGGACG--------------------------------------------------------------CATCA---------------GCAGCAGCA....................................................................................................................................................2411.0011000000
droYak3
ACAGCAACCCC---TGCATCTACGAGTCCT----ACCTCGAAA------------GAATCCCCGAACAGGTAGGA---------------------------------------------------------------------------ATAGATCAGGA------------------------------------------------------------------------------ATCAGGAATAGATCATAAACTGTGTATATACCT------TTGACGAAACTGCTTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATATTCTGTC--GTGAGCTAATC-GGTTATCT------------------------------------------------------------------------------GTTTTCTT-----------------------------TCGCCGCCATTTAT---TGT----TACCTCTGTTTTGATCCGCTCCTTCG---CAGAGAGCAGCAAGCGGACG--------------------------------------------------------------CCTCA------------------GCAGCAGCA---------------------------------------GCGACCCG---------AC------------------------------------------------------------------------------GTGAACGCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................GAGTCCT----ACCTCGAAA------------GAATCCCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
droEug1
GCAGCAGCAGC---AGCAAGCGCAACACCA----GCAGCAGCA------------GC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAC---AGT----TGCA---G--------------------------------------TT-----------------------------------------------------------------GCA------------GCAACAGCAGCAGCAGCATAGCTCGAACAATTTGATTGTGGGCCATCGGGGCAGCTCTTCTGTTCAAGGACGCCTGAGCTCTGCTGTATTTAGCCCCATCTCGCTGCCCTCCTCGTTGCAGAGTTCCTTTGATGGCGACACCAACTCGGTGATGACCAACSizeHit CountTotal NormTotal
No Reads
droBia1
GCAGCAACATC---TGCAACAGCAACACCT----TG------------------------------TAAGCCCGCAGCAAC---ACCTGC-----------------------TCAAGTCGGAGACGCTGCTCTCCCATGAGGAGGATCAGTTGATCAGCAACCTG-------------A------------------------------CCGACGCGTCTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGTCTCGCACA--GCGAACTCTTC-TCGGATCT------------------------------------------------------------------------------CTTCTTCC---CCTCTGACTCGAACAACTCCCTGCTCT----------------------------------------------------CCCCGACCACCAGTGGCTAT-----CCGGAAAATCCCGCCGAGGACCTCACCAGCTCCATTGAGAATCTCACCAAGTTGACTTGCCT------------------GCGGGACAA---------------------------------------GCGGCTTT---------CC------------------------------------------------------------------------------TCAATCCCCSizeHit CountTotal NormTotal
No Reads
droTak1
GAACCTAC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTGTATCTGTATCTCAGAAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTGTC--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------TGTTTTCT-----------------------------TCTCTTCCATTTCT---CGTTTACCGTGTGTGTTTTGCTCTACTGTTTCG---CAGAGAGCAACAGGCGGACG--------------------------------------------------------------CCTCAGCAGCAGCGGCAGCAGCAGCAGCAGCG---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GCGAACGCCSizeHit CountTotal NormTotal
No Reads
droEle1
-CAGCAATCGG-----TATCGCCCACACCT----GCAGTCAAG------------GTGTTC-----------------------------------------------------------------------------------------------------------------------------------------------CATCAGCTGAGCCATCCGTT-GGTGCATCAA-----------------------TTG------CAT------CACCATCA-TGCC-----GCCGCAGTGCATCAT------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATC--ATGGAC---------------------------------------------------------------------------------------------------------------ATGGACACCATGCTGCCGCTGCCGCCCATCAT---CAT----CACCATCACCAT----CATGCTGCGG---CAGC-AG---------------------------------------------------------------------------CAGCAGCAGCGGCGGCAGCAGCAGCGGCAGCA---------------------------------------GCGGCCCA---------CC------------------------------------------------------------------------------ATC-ATGCCSizeHit CountTotal NormTotal
No Reads
droRho1
ATGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTTCGACTGTGTGTGTATCTCAGAAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTGTT--GTGAGCTAATC-GCCTATCG------------------------------------------------------------------------------T--TTCTT-----------------------------T------TATTTCT---GGT----TACCTGTGTTTTGCTCCGCTGTTTCG---CAGAGAGCAACAGGCGGACT--------------------------------------------------------------CCTCA---------------------GCAGCG---------------------------------------GCCACTCG---------TC------------------------------------------------------------------------------GCGAACGCCSizeHit CountTotal NormTotal
No Reads
droFic1
ACGGCAATAGC---TATAGCTACAAATCCT----ACCTCTAAA------------GAATCCCCAAACAGGTATACAA--------------------------------------------------------------------------------TACATACCA-------------T------------------------------------------------------------------ATGGCTAATCGACTGCGT-TGTATCTTAGAAACTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTGTC--GTGAGCTAATC-GATTGCCT------------------------------------------------------------------------------TGCTTTGT-----------------------------TC-CATCCACTTAT---TGC----TACCTGTGTTTTGCTCCGCTCTTTCGCAGCAGAGAGCAACAGGCGGACG--------------------------------------------------------------GCTCA---------------------GCAGCT---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GCGAACGCCSizeHit CountTotal NormTotal
No Reads
droKik1
ACAGTAAAATC---AACAGCAACAACAACAGTTTACATCAATA--------------GTCAGCAAGTAAAGAGGAAG----AGGAGCTGCAGTCGCCGCCGCGGCA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCATTGTTAATGGCATTAACAACAATATCA-GCAGGAGCTGCTGCAGCAGCAACCAC------ATCATCACCAACAATCGAAG--------------------------------------------------------------------------------------------------------------CAGCCG---------------------------------------------------------------CAGCCGCCGCAACA-----CCA-----------------------------ACA--------------------------------TCGGTAACTGCATCT---ACAGCAGCAATAA---------------------------------------------------------------------GATCA------------------GCAGCTGCC--------------GTC----------------------GCC-ATCG---------TT------------------------------------------------------------------------------GCCGCCGACSizeHit CountTotal NormTotal
No Reads
droAna3
ACAGCAACCATTACTGCATCTTCCGGTCCT----ACCTCTACA------------GAT------AGCAGGTAAACAAGCCATTAACTTTCAAAGGCAGTTCAAGATCGGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAGAAACTC------------------------------------------AAGAAAATATTGTAAAGGAGTTTATG-------------------TAAGTTTTGTAAAAATAATAGTTTTTTTGGTTTATAACTGAAATAAAATATGTTT----CAAGCCTTAGTCTTATAGT-TTCCA-----TGT---CATTTACGAAATTCTCTT--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------TTT----------------------------------------------TT---TGT----TACCTCTGTTTTGCTCCACTCTTTCG---CAGAGAGCAACAAGTGGACGAGTCG------------------------ACCGTCTCCG-----------------------TCTCCGCCGAAGCAGAAGCAGCAGCAGCAGCA---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GCAAACGCCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................ATCTTCCGGTCCT----ACCTCTACA------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCCGAAGCAGAAGCAGCAGCAGC.....................................................................................................................................................2511.001010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGAGCAACAAGTGGACGAGTCG------------------------ACC...............................................................................................................................................................................................................2711.001000001
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGCTCCACTCTTTCG---CAG................................................................................................................................................................................................................................................................2111.001100000
................................................................................................AGTTCAAGATCGGTTA-------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGAGCAACAAGTGGAC................................................................................................................................................................................................................................................1920.501000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAGAAGCAGCAGCAGCAG...................................................................................................................................................22100.101000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCAGAAGCAGCAGCAGC.....................................................................................................................................................20140.071000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGAAGCAGCAGCAGCA....................................................................................................................................................19200.051000001
droBip1
ACAGCAACAATTACTGCATCTTCCGGTCCT----ACCTCCACA------------GAT------AGCAGGTAAACAAGCCC---A------------------GATCGGTTATTTATGCTA------------T-------------------ATGATATAGCCAGTTTAAGTAAGTTTT-------------------------CAAAATTATTATAAAAATTCAAAAAGTGCA-----------------------TCT------TAA------AGTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTTTG--GTGAGCTAATC-GATTACCT------------------------------------------------------------------------------TTTTT---------------------------------------------------C----TACTTCTGTTTTGCTCCACTCTTTCG---CAGAGAGCAACAAGTGGACGAGTCGTT----------------G------TCGTCGT-------------------------CAGTGGTCTCCGCCGAAGCAGCAGCAGCAGCA---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GCAAACGCCSizeHit CountTotal NormTotal
No Reads
dp5
ACAGAAATATC------------GAACTCT----ACTTCCAAA------------GAATCACCGAGCAGGTGGATAATCTC---ACTTTT-----------------------ATATGTTA--------------------------------GTTGTACAGCCGA-------------ACCAATGCATGAGGAAAAAATGTTACTTTGATCATTATATCTGTT-AGAGGTTTCA-----------------------CTG------TAC------AATTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTTTT--GTATACTAATC-GATTAGCCG-----------------------------------------------------------------------------T--T---CATT---------------------------------------T---TAT----CGCCTCTGTTTTGGCTTTCTGCTTCT---TAGAGAGCAACAG--------------------------------------------------------------------------------------------------------------------------------------------TCCACTCG---------AC------------------------------------------------------------------------------GTGAACGCCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAG--------------------------------------------------------------------------------------------------------------------------------------------TCCACTCG---------AC------------------------------------------------------------------------------GT.......1911.0010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--T---CATT---------------------------------------T---TAT----CGCCTCTGTTT.....................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................................................................................................................................ATCATTATATCTGTT-AGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
ACAGAAATATC------------GAATTCT----ACTTCCAAA------------GAATCACCGAGCAGGTGGATAATCTC---ACTTTT-----------------------ATATGTTA--------------------------------GTTGTACAGCCGA-------------ACCAATGCATGAGGAAAAAATGTTACTTTGATCATTATATCTGTT-AGAGGTTTCA-----------------------CTG------TAC------AATTG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACGAAATTCTTTT--GTATACTAATC-GATTAGCCG-----------------------------------------------------------------------------T--T---CATT---------------------------------------T---TAT----CGCCTCTGTTTTGGCTTTCTGCTTCT---TAGAGAGCAACAG--------------------------------------------------------------------------------------------------------------------------------------------TCCACTCG---------AC------------------------------------------------------------------------------GTGAACGCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACTCG---------AC------------------------------------------------------------------------------GTGAACGCC1811.001100000
droWil2
ACGGCGACAGC---TGCAGGCACATCAACT----ACCTCGAAA------------TCGTCACCAAACAGGTAGGTCG--------------------------------------------ACGTCTGGGTCTCTTCTC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAT--GTGTGCTAATC-GATTAACA------------------------------------------------------------------------------T--T---TACT---------------------------------------T---TTT----TGTTTTTGTTTTGCTTTCGTCTTTCG---TAGAGAGCAACTGG-----------------------------------------------------------------------------------------CAGCAGCAGCA---------------------------------------GCCACTCG---------GC------------------------------------------------------------------------------GTGAACGCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................CATCAACT----ACCTCGAAA------------TCGTCACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.00330000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA---------------------------------------GCCACTCG---------GC------------------------------------------------------------------------------GT.......2111.00100010
droVir3
GCAGCAGCAGC---TGCAATTACAACAGCC----GCAACAGAC------------GCAGTTGTCTACAACAACAATA-------------------------------------------------------------------------GCAGCTCAGCAGCTAC-------------C-------------------------------------------------------CAAAGC-----------------------------ACCAGCAGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTAAGACCGAATT--GAAAGGTAATT-GATTACTT------------------------------------------------------------------------------AAGAATCT-----------------------------GC-----TATTTCCTCTTGC----TAACTCTA---TCCTCTTCCCATTTG---CAGTTACTAACAACAGAAAG-----CT--------------------------------------------------------GTCC------------------ACACCCGCC---------------------------------------GCGC-------------CC------------------------------------------------------------------------------GCCAGCAATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................CAACAGCC----GCAACAGAC------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.002000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC------------------ACACCCGCC---------------------------------------GCGC-------------CC------------------------------------------------------------------------------GCC......2011.001000000000000000000000000000000000000000000000000000000100000000
.....................................................................................................................................................................C-------------C-------------------------------------------------------CAAAGC-----------------------------ACCAGCAGCGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000010000
.....................................................................CAACAATA-------------------------------------------------------------------------GCAGCTCAGCAGCT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000100000000000000000000000000
..........................AGCC----GCAACAGAC------------GCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
GCAGCAACAAC---AGCCTCAACAACAGCA----AAAGCATCTGCCATTGGCCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATC-TATCGCAT-CGTTTGCAACAGGTGCAGCAGCGTAACGATCCTAGCCATGTGGGCAGCGTGCAAATGCACTCGCTGGCCACGCAGAA-----CCA-----------------------------ACAGCAGCAGCAAC---AGT----TGCATCTG--------------------------------------GC-----------------------------------------------------------------ACA------------GCAGCAGCAGCAGCCGC--------AACAATT---------GCCAGCGGAGCAGCGCAGCGG---------GC------------------------------------------------------------------------------CTAAGCGCTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................ATCTGCCATTGGCCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCTAGCCATGTGGGCAGCGTGCAAAT..................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.................................................GGCCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGAATC-TATCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
....................................AGCATCTGCCATTGGCCACA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATC-TATCGCAT-CGTTTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAA-----CCA-----------------------------ACAGCAGCAGCAAC---A......................................................................................................................................................................................................................................................................................................2420.501000010
droGri2
ACAACAACAAC---AATAATATCGACAACT----ACCTCAGTCGCCGCTCGGCAAAGGTCACCGCCCAGGTAAATTG-------------------------------------------------------------------------A-------GTAGTCAA------------------------------------------------------------------------TAA-----------------------------AAAAAAAATTT-------------------------------------------------------TTAAAAGTAGGCTAACTGGAAATAAAATTTTGAATATTATTAACAACTAAAGCATTTACAAGTTTTCAGTTTACCTAAAAAGTGCTGTTTGTTAACGTTCGTTGTTCAATTCTCCATTCTACGTTTGTATTTACGAAATGTCGTTGTGTGTGTCAATC-GTTTACCT------------------------------------------------------------------------------TTCGT--TATT---------------------------------------T---TTC----TGTTTCTGTTTTGATCAATTGTTTCGTCGCAGAGAGCAACAGACAAGCG--------------------------------------------------------------CC---------------------GCTGCAGCA---------------------------------------GCGACCCG---------TC------------------------------------------------------------------------------GTGAACGACSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:27 PM