ID:

dsi_938

 Coordinate:

3l:15991725-15991882 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-31.1 -30.9 -30.6

Flybase annnotation

five_prime_UTR [3l_15991719_15991724_-]; CDS [3l_15991538_15991718_-]; exon [3l_15991538_15991724_-]; five_prime_UTR [3l_15991883_15992081_-]; exon [3l_15991883_15992081_-]; intron [3l_15991725_15991882_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTTTCTTTTAACTTGGCCGCGTGCTTTTGATTGAAGAAAACGCAGCTCGTGTGAGTGCGGGAACCTTGTGTAGTGGTCATAAACTATGTGTTCCACCGTCGGGACCATAAAGTGCGGGTTTACGAGCACTACCGGGGGAACAACCTACAATTAAAGTAGTGATTACGTAAAGACAGCCGTTTTATTGGTTAAACATCGCTATTTGCAGATCAAAATGGGTTCCCTGGAGAAGCTGAAACAATTGAGACTGATACACCT
*************************************************************..(((((.((((((.((.(((((((((.(((((......))))))))........)))))).)).))))))))))).......((((.......)))).....................****************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR902008
ovaries
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
.................................................................................................................................................................................................................................GGAGAAGCTGAAACAATTGAGACT......... 24 0 1 4.00 4 2 2 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TGAAACAATTGAGACTGAT...... 19 0 1 3.00 3 2 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTCCCTGGAGAAGCTGAAACAAT................ 23 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
CTTTCTTTTAACTTGGCCG............................................................................................................................................................................................................................................... 19 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TGAAACAATTGAGACTGATACAC.. 23 0 1 2.00 2 0 0 0 0 0 0 2 0 0 0 0 0
................................................................................................................................................................................................................ATCAAAATGGGTTCCCTGGAGA............................ 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................TTCCCTGGAGAAGCTGAAA.................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................CAAAATGGGTTCCCTGGAGAAGCT........................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................ATTGAGACTGATACACCT 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......TTTAACTTGGCCGCGTGCTTTTGATTG................................................................................................................................................................................................................................. 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................AACGCAGCTCGTGTGAGTG......................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................TCAAAATGGGTTCCCTGGAGAAGCTGA...................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................AAAGATCAAAATGGGTTCCCTGGAGAAG.......................... 28 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................GAAACAATTGAGACTGAT...... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................ATGGGTTCCCTGGAGAAGC......................... 19 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................TGGGTTCCCTGGAGAAGCTGAAACAAT................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TGGGTTCCCTGGAGAAGCTGAAACAATT............... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ATCAAAATGGGTTCCCTGGA.............................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................CTGAAACAATTGAGACTGAT...... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.........................TTTGATTGAAGAAAACGCAG..................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GAAGCTGAAACAATTGAGACTGAT...... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................AACCTTGTGTAGTGGTCATAAACTATG.......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................AGTGATTACGTAAAGACAGCCGT.............................................................................. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
...............................................................................TAAACTATGTGTTCCACCGTCGGGACCA....................................................................................................................................................... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
....................................AATACGCAGCTCGTGTCAG........................................................................................................................................................................................................... 19 2 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................TTGGGACTGATACAC.. 15 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0
....................................................................TGTAGCGGTCATAAA............................................................................................................................................................................... 15 1 10 0.20 2 0 0 0 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................AGAAGCTGAAACAACGGACAC.......... 21 3 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................AGTTCGACCCTCGGGACCA....................................................................................................................................................... 19 3 16 0.13 2 0 0 0 1 0 0 0 0 0 0 0 1
.........................................................................................GTCCGACCCTCGGGACCA....................................................................................................................................................... 18 3 20 0.10 2 0 0 0 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................CGTTATATTGGTTAAA................................................................. 16 1 13 0.08 1 0 0 0 0 1 0 0 0 0 0 0 0
.............................TTTGAAGAAAACGCA...................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..........................................................................................TTCGACCCTCGGGACC........................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGGCTGGTCAAAATGGGTT..................................... 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................GGGGGAACAACCCAGA............................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

GAAAGAAAATTGAACCGGCGCACGAAAACTAACTTCTTTTGCGTCGAGCACACTCACGCCCTTGGAACACATCACCAGTATTTGATACACAAGGTGGCAGCCCTGGTATTTCACGCCCAAATGCTCGTGATGGCCCCCTTGTTGGATGTTAATTTCATCACTAATGCATTTCTGTCGGCAAAATAACCAATTTGTAGCGATAAACGTCTAGTTTTACCCAAGGGACCTCTTCGACTTTGTTAACTCTGACTATGTGGA
******************************************************************************..(((((.((((((.((.(((((((((.(((((......))))))))........)))))).)).))))))))))).......((((.......)))).....................************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 GSM343915
embryo
...........................................................................................................................CTCGTGATAGGCCCCTTGTT................................................................................................................... 20 2 1 1.00 1 1 0 0 0 0 0
...................................................................................................................................................................TTGCATTTCTGTCGGAAAAATAAG....................................................................... 24 3 3 0.33 1 0 1 0 0 0 0
.....................ACGAAAACTCACTTC.............................................................................................................................................................................................................................. 15 1 17 0.18 3 0 0 3 0 0 0
........................................................................................................................ATACTCATGATGGCCCGC........................................................................................................................ 18 3 10 0.10 1 0 0 0 1 0 0
.......................................................................................................................................CCCTTGTTGGTTGTAAATG........................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1
.....................................TTTGCGACGAGGACACTAAC......................................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0

Generated: 04/24/2015 at 12:45 AM