ID:

dsi_9358

 Coordinate:

3l:7641458-7641607 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-30.2 -30.0 -30.0

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CGACTGCATCAGTCCGGACACGCTAAATCCGCCATCGCCGGCCGAGTCAAGTGAGTATAGCTAGCTATCGCGCTATAGATACATCGATAAAAAGTCAATTGAGATCGTAAAACAAACCATTATCACATGTAATGTCTATTGAGATCGTCAGTCACAGTTTCGAGCTGTCGAGAACAATCGATTTCCGAAATCGAGATCGAAATAATCGGTAAATTTAATATGTTACTTTTGTAAAGCTGAAGTACTTGTA
**************************************************(((..((((((..((....))))))))..)))...............(((((((((.(((.......((((((.....))))))....))).)))).))))).....((((((....))))))....((((((((.......))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M023
head
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
......................CTAAATCCGCCATCGCCGGC................................................................................................................................................................................................................ 20 0 1 4.00 4 3 1 0 0 0 0 0 0
........................AAATCCGCCATCGCCGGCC............................................................................................................................................................................................................... 19 0 1 2.00 2 0 2 0 0 0 0 0 0
...........................TCCGCCATCGCCGGCCGAGTC.......................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
.................ACACGCTAAATCCGCCATCGCCGGC................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0
..........AGTCCGGACACGCTAAAT.............................................................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................GCTAAATCCGCCATCGCCGGCCGAG............................................................................................................................................................................................................ 25 0 1 1.00 1 0 0 1 0 0 0 0 0
.................ACACGCTAAATCCGCCATCGCCGGCC............................................................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 1 0 0 0
........................AAATCCGCCATCGCCGGCCGA............................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0
...........................TCCGCCGTCGTCGGCCGAG............................................................................................................................................................................................................ 19 2 1 1.00 1 0 0 0 1 0 0 0 0
..........AGTCCGGACACGCTAAATCC............................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0
............TCCGGACACGCTAAATCCGCCA........................................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0
.......................................................................GCTATAGATACATCGATAA................................................................................................................................................................ 19 0 1 1.00 1 0 0 0 0 0 1 0 0
..........................ATCCGCCATCGCCGCGCGA............................................................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 0 0 0 1
......................................................................................................................................................GTCACAGTTTCGAGCCCT.................................................................................. 18 2 7 0.14 1 0 1 0 0 0 0 0 0
..........................................................................................................................................TTGACATCGTCACTAACAGT............................................................................................ 20 3 8 0.13 1 0 0 0 0 0 0 1 0
............................CCGCCGTCGTCGGCCGAG............................................................................................................................................................................................................ 18 2 10 0.10 1 0 0 0 0 0 0 1 0
.................................................AGTAAGTATCGCTAGCT........................................................................................................................................................................................ 17 2 11 0.09 1 0 0 0 0 0 0 1 0
.............................CGCGCTCGCCGGCCGAG............................................................................................................................................................................................................ 17 2 13 0.08 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................TTGTAAAGCTAAAGT....... 15 1 19 0.05 1 0 0 0 0 0 0 0 1
.............................CGCCCTCGTCGGCCGAG............................................................................................................................................................................................................ 17 2 19 0.05 1 0 0 1 0 0 0 0 0
..............................................................................................TCACTTGAGTTCGTAAA........................................................................................................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0
................................................................................................................................TTAATGTGTATTGAGA.......................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

GCTGACGTAGTCAGGCCTGTGCGATTTAGGCGGTAGCGGCCGGCTCAGTTCACTCATATCGATCGATAGCGCGATATCTATGTAGCTATTTTTCAGTTAACTCTAGCATTTTGTTTGGTAATAGTGTACATTACAGATAACTCTAGCAGTCAGTGTCAAAGCTCGACAGCTCTTGTTAGCTAAAGGCTTTAGCTCTAGCTTTATTAGCCATTTAAATTATACAATGAAAACATTTCGACTTCATGAACAT
**************************************************(((..((((((..((....))))))))..)))...............(((((((((.(((.......((((((.....))))))....))).)))).))))).....((((((....))))))....((((((((.......))))))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................TGTCAGAGCTTGACAGCT............................................................................... 18 2 2 6.50 13 8 5 0 0 0 0 0
.........................................................................................................................................................TGTCAGAGCTTGACAGCTG.............................................................................. 19 3 9 4.00 36 19 16 0 0 1 0 0
.........................................................................................................................................................TGTCAGAGCTTGACAGCTGT............................................................................. 20 3 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................GCTTTAGCTCTAGCTT................................................. 16 0 4 0.25 1 0 0 0 1 0 0 0
.......................................................................................................................................................AGTGTCCAAGCTTGACACCT............................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0
.....................................GGGCGGCTCAGTACCCTCAT................................................................................................................................................................................................. 20 3 5 0.20 1 0 0 1 0 0 0 0
.......................................................................................................................................................AGTGTCCAAGCTTGACATCT............................................................................... 20 3 5 0.20 1 0 0 1 0 0 0 0
.........................................................................................................................................................TGTCAGAGCTCGACAGCTGG............................................................................. 20 3 5 0.20 1 1 0 0 0 0 0 0
.........................TTAGGCGGGAGCGGCAGGTT............................................................................................................................................................................................................. 20 3 11 0.09 1 0 1 0 0 0 0 0
.......................................................................................................................................................ACTGTCAGAGCTTGACAGC................................................................................ 19 3 11 0.09 1 1 0 0 0 0 0 0
..................................................................................................................TTAGTAATAGTGTAAATCACA................................................................................................................... 21 3 17 0.06 1 0 0 0 0 0 1 0
..............................................................................................................................................CTAGCCGTCAGGGTCAA........................................................................................... 17 2 19 0.05 1 0 0 0 0 0 0 1
...................................GCGGCCGGCTCCGCTC....................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0

Generated: 04/24/2015 at 10:26 AM