ID:

dsi_9355

 Coordinate:

3l:14195943-14196092 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.1 -11.0 -11.0

Flybase annnotation

exon [3l_14196093_14196529_-]; five_prime_UTR [3l_14196093_14196529_-]; intron [3l_14195722_14196092_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GCCAGAAGTCAAAAGTGAAGCGGAAAACAGAGTGGAGATAACAATTAACGGTTAGTTGTGAAGCTAAAACTGCACAATAAACATATCATGAACATAAGAAGAGGGGCATTTGGTTTTTTGATATTTTGGGTATCAGCATCTACATCAACTTGTTTTGAATCGAACTGATTTTAACATGCATTTGGACCAAACTAACAACGTTTCGAATGTTATCTCTTATGGAAATGGTATTGCTATATTATACCATCAT
************************************************************************************..((((....(((((..((.....((((((((...((((..(((((((........))).))))..))))..))))))))))..))))).))))......****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 O002
Head
 SRR902009
testis
 GSM343915
embryo
..................................................................................................................................................................................................................TATCTCTTTTGGAAATGGTGTTGT................ 24 3 1 3.00 3 2 0 1 0 0 0 0 0 0 0
.........................AACAGAGTGGAGATAA................................................................................................................................................................................................................. 16 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0
................................................................................................................................................................CGAACTGATTTTAACATGCATTTG.................................................................. 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................ATTTGGTTTTTTGATATTCT........................................................................................................................... 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................ATCATGAACATAAGAAGA.................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........TCAAAAGTGAAGCGGAAAACAGAGT......................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..........................ACAGAGTGGAGATAACAATTAACGC....................................................................................................................................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............TGAAGCGGAAAACAGAGTGGAGATAA................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................TATCTCTTTTGGAAATGGTGTTGTT............... 25 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........TCAAAAGTGAAGCGGAAAACAGAGTGGA...................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................TATCTCTTTTGGAAATGGTGTTGTTA.............. 26 3 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...........................CAGAGTGGAGATAACAATTAACGGGGC.................................................................................................................................................................................................... 27 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..CAGAAGTCAAAAGTGAA....................................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................................TGCTATATTATACCATA.. 17 1 2 0.50 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TCTCTTTTGGAAATGGTGTTGT................ 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................AGGGTATCTCTTTTGGAAATG....................... 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0 0
................................................................................................AGAAGAGGGGTGTTTGGTTT...................................................................................................................................... 20 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................................CTTTTGGAAATGGTGTTGTTA.............. 21 3 8 0.13 1 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................GATAATTTGAGGATCAGCAT............................................................................................................... 20 3 8 0.13 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................AGAGGGGAATTTGTTTTTT.................................................................................................................................... 19 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1
...........................................................................................................ATTTGGTTTTTTGAT................................................................................................................................ 15 0 20 0.05 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................TGTAACGAACTGATTTTAAAA.......................................................................... 21 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
........................................................................................GGAACATAAGAAGAGGA................................................................................................................................................. 17 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.....AAGTCAGAAGTGAAACG.................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0

Anti-sense strand reads

CGGTCTTCAGTTTTCACTTCGCCTTTTGTCTCACCTCTATTGTTAATTGCCAATCAACACTTCGATTTTGACGTGTTATTTGTATAGTACTTGTATTCTTCTCCCCGTAAACCAAAAAACTATAAAACCCATAGTCGTAGATGTAGTTGAACAAAACTTAGCTTGACTAAAATTGTACGTAAACCTGGTTTGATTGTTGCAAAGCTTACAATAGAGAATACCTTTACCATAACGATATAATATGGTAGTA
******************************************************************..((((....(((((..((.....((((((((...((((..(((((((........))).))))..))))..))))))))))..))))).))))......************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 GSM343915
embryo
....................................................................................................................................................................................................................AGAGAAAACCTTTACCACAACAAT.............. 24 3 1 89.00 89 85 4 0 0 0 0 0
....................................................................................................................................................................................................................AGAGAAAACCTTTACCACAAC................. 21 2 1 4.00 4 4 0 0 0 0 0 0
...................................................................................................................................TAGTCGTAGATGTAGTTGAAC.................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0
......................CTTTTGTCTCACCTCTATTGT............................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................................ATGGAGAATACCTTT......................... 15 1 4 0.25 1 0 0 0 0 1 0 0
......................................................................ACTTGTTAGTTGTATTGTACTT.............................................................................................................................................................. 22 3 5 0.20 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................................TGCTTTCAATTGAGAATAC............................. 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:14195893-14196142 - dsi_9355 GCCA---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-AATTAACGGTTAGTTGTGAA-GCTAA-----A-ACTGC------ACAATAAACA---------------------TA-------TCATGA-----------------------------------------------------------------------------------------------------------------ACATAAGAAG--------------------------------------------------------------------------------------AGGGGCATTT-GGT----------------TTT---T---TGA---T---ATTT-----TGGG------TATCAGCATCT--------ACATCAACTTGTTTTGAATCGAACT-----GATTTTAACA--TGCATTTGGACCAAACTAACAACGTTTCGAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCAT
droSec2 scaffold_0:6668671-6668932 - GCCA---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-AATTAACGGTTAGTTGTGAA-GCTGA-----A-ACTGC------ACAATAAACA---------------------TA-------TCATG-------AAAAA-------------------------------------------------------------------------------------CTCTAT--------AAAACATA-CAAG--------------------------------------------------------------------------------------GGGGGAATTT-CGT----------------CTT---T---TAA---T---ATTT-----TGGG------TATCAGCATCT--------ACATCACCTGGTTTCGAATCAAACT-----GATTTTAACA--TGCATTTGGACCAAACTAACAACGTTTCGAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCAT
dm3 chr3L:14543431-14543686 - GCCA---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-AATTAACGGTTAGTTGTAAA-GCTAA-----A-ACTAC------ACAATAAACA---------------------TA-------TCATG-------AAAAA-------------------------------------------------------------------------------------CTTTAT--------AAAACATAAGAAG--------------------------------------------------------------------------------------GGGGGCATTT------------------------------TAT---T---ATTT-----TGGG------TATCAGCATTT--------ACATCACCTTGTTTCGAATCAAACT-----GATTTTAACA--TGCATTTGGACCAAACTAACAACGTTTCGAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCAT
droEre2 scaffold_4784:14509877-14510123 - ACCA---GAAGTCAA---AAG--TGAAGTG--------------AA----------------------------GAGG----AAAACAGAGAGGAG----------ATAAC-AATTTACGGTTAGTTGAGAG-C-TGA-----G-ACTGCC-----AC----------------TGTCAAATAAACATA-------CCATACAAATTGGAAAA---------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------GGGAA---AGGGGCCTTT------------------------------T------------------------------TTAGCATCG--------ACATCACCTCGTTTTGAAACAAACT-----GATTTTAACA--TGCATTTGGACCAAACTAATAACGTTTCGAGTG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCAT
droYak3 3L:14629042-14629311 - GCCA---GAAGTCAA---AAG--TGAAGAG-----------------------------------------------G----AAAACAGAGAGGAG----------ATAAC-AGTTAACGGTTAGTTGAAAG-C-TTA-----A-ACTGC------AAAATAAACA---------------------TACATA---TCATACAAATTGGAAAA-------------------------------------------------------------------------------------CTTTTT--------CAAACATA---CG--------------------------------------------------------------------------------------AGGGGCATTTTCG-----------------------------ATATTTCAATTT-----TGGC------TCTAAGCATCA--------ACATCACCTTGTTTTGAAGCAAACC-----GATTTTAACA--TGCATTTGGACCAAACTAATAGCGTTTCGAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCAT
droEug1 scf7180000409456:773838-774120 - GCCA---GAAGTTAA---AAG--TGAAGCG-----------------------------------------------G----AAAGCAGAGAGGAG----------ATAAC-AGCTAACGGTTAGTTGGGAAGCTTTA-----A-AACGA------AAAATAAACAAAGTTTATAG-----------------------------------------------------------------CTGTGCTTTGTAACATATACATA------------------------------------------------CAAATATC---AG--------------------------------------------------------------------------------------CAGGGGGTTTCTGC----------------CTG---A---TGA---T---ATTT-----TTAT------TATCAA-------------ACATCATCTTT-TTCGA-----TTT-----CATTTTAACA--TGAATTTGGCCTAAACTAATCAAATTTTGAATA-----------------------ACTAT-----GA------------ATATGTAGATCGTTTTATGAACATTATAT-------AT------AC-ACGCTCTGTATACATCAT
droBia1 scf7180000302428:5352021-5352284 + ACCA---GAAGTTAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGAGGAG----------ATAAC-AACTAACGGTTAGTTGCAGA-CCTTA-----A-TCTAT------AA-----AAA---------------------TA-------CCA-----------------------------------------------------------------------------------------------------------------------------GGCAGAGCTAAAAACCATCATCAAAATTGTAT--A-CTATTAGA--------------------------------------------------------TTTTTTTTT--------------------G---------------TACCATGCCAA-------A---------------------------TACCAAATG-----ATTTTTGATA--TGAATTCGGACCAAACTAATGGCATTTCGAAAGAAACAATA---------------------------------------ATATGTACATTTCGTTATGATAATGGTAGTGCTA-TAC------ATAGCGCCGTGTGGACATCAT
droTak1 scf7180000415135:220261-220523 - ACCA---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGA--GGAG----------ATAAC-AACTAACGGTTAGTTGCAAA-CTTCC-----A-ACTGA------GAAATAAACAAAGC-TAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------GCTAAAAAATATCATCAAAATAGTCG--AGATATGAGG--------------------------------------------------------TTTTTTTTACCATGTCACTGTTAATAATAA---------------TATCATGCCAA-------ATCT--------TCATCACCTTGTTTTGA----------------------------ATCTGGACCAAACTAATA------------------------------------------------------------TATGCAAATCTCATTATGGAAATGGTATTGCTC-TACT-----ATACCCCCGTTTATACATCAT
droEle1 scf7180000491199:1683556-1683870 - A------------------AG--CGAAGCG-----------------------------------------------A----AAAACAGAGAGGAG----------ATAAC-AACTAACGGTTAGTTGCGAA-CTTCA-----G-AACGA------AACATAAACAAAAGTTATTGTA----------------------------------------------------------------------------------------------------TA-----ATTAATTCGTATATTTTATAGTAATTAAAAATATC---AG--------------------------------------------------------------------------------------AGGGGTATTTTTA---------CCACAGCTTTA---A---TGA---T---ATCT-----TCAT------AATTCA--CTAAAATATTTTTAAAACCTTGTTTCGATTTCATTTAATAAGATATTTTTA--TGAATTCGGACCAAACCAATAACATTTCGAATG-----------------------ACATT-----AAA-------AAATAGATGTGGATCTTACTATGGAATTAGTGTTGCTA-TAC------AC----ATGTGTGCACATCAT
droFic1 scf7180000453784:879443-879723 - A------------------AG--CGAAGTG-----------------------------------------------G----AAAACAGAAAGGAG----------ATAAC-AACTAACGGTTAGT-GCGAA-CTTCA-----A-ACCGA------AACATAAACAAAAGTTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------GC-------TATCATCTAAATTGTTT--A-ACATAATCTATACCCTACTA-CCTCACTTAAAAATTCAAAAAGTACTCAATATCGACAGTT-GAT----------------ATG---C---TGA---T---ATTT-----TAGT------A-------ACC--------AAACCACCC---------------------------CATA--AGAATTTGAAACAAACTCATACGATTTCGAATG-----------------------ACACT-----AAAATTATGAAAA--------------------AAGATGGTGT---T-C-ACTGTAAT------CTGTGTTTACATCAT
droKik1 scf7180000302383:660618-660847 - AGCA---GAAGAAGA---TAG--CGAAGAG-----------------------------------------------T----A-GACGCAGAAGAG----------ATAAGAAAATAACGGTTAGTGGCGAA-CTTCA-----C-CTCAA------AACATAAACAAAAGTAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------AC-------TAAAATCA----------------------------------------------------------------------------------------------------T---AAA---T---TATTCAGTTATCATACCAA-------AATT--------TTATTAAATT-------A-CTGAGT-----GGCTTT---A--TTAAATCAGGCCAAAAAATTAACATTAAAAAT-------------------TATTATTAAC-------CA------------------------TTTCGGACAT--CATTAGTG-TGTG-----T-----------AAACACCAT
droAna3 scaffold_13337:4548953-4549151 + CCCATCAGAAGAAGA---AAG--CAGAGAG-----------------------------------------------G----AAATAAGCCATAAG----------ATAAC-CACTAACGGTTAGTTGCGAA-CTTTA-----C-TTCGA------AACATAAACAA---------------------TAACTAAAAAA----------TACACTGACAT------------------------------AAAA-------------------------------------------------------------------------------------TGTTGTCTAAACAGTATTTAGAAATCATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACATTATCT---TCTCACTGGTA------------------------TTTTGGCCATGCTGTTGCCC-TTTG-----A-----------AAACATCAT
droBip1 scf7180000395450:668279-668482 + CCCAGCAGAAGAAGC---GAG--CAGAGAG-----------------------------------------------G----AATTAAGCCGAAAG----------ATAAC-CACTAACGGTTAGTTGCGAA-CTTTA-----C-TTCGA------AACATAAACAA---------------------TAACTAAATAA----------TACACTGACGT------------------------------TAAA----------------------------------------------------------------------------GTTT-----AGTTGTCTAAACCATACCTCGAA------ATCACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACATTATCG---TCACCCTGGTA------------------------TTTTGGCCATGCTCTTGCCC-TCCG-----G-----------AAACATCAT
dp5 XR_group6:7239579-7239844 - GCAA---AA-GAAGA---AAC--CAAAGGA-----------------------------------------------GACGGAAGACAAGAAAGAGCGCGACTTACGCAGC-AAATAACGGTTAGTTTCATC-C-----ACCAGCATTC-CACCCCAAAACCAAAC----------------C----AAAACAAAATAA----------AAAAAAA----TATGTTTGGAACTCATCGGACGAGTGTTATAAAATATATACATATATGT------ATGTGTAAAACATAAA----------------------------------------------------------------------------CAACACTTTTGATCATCCGCTTAAAAAATGTACAAGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACACGCTGT---G-C-AGCAAAAT------GCATCGAAAAATCAC
droPer2 scaffold_41:592643-592904 - GCAA---AA-GAAGA---AAC--CAAAGGA-----------------------------------------------GACGGAAGACAAGAAAGAGCGCGACTTACGCAGC-AAATAACGGTTAGTTTCATC-C-----ACCAGCATTC-CACCCCAAACCAAACC---------------------AAAACAAAATAA----------AAAAAAAAAATTATGTTTGGAACTCATCGGACGAGTGTCATAAAATATGT--ATATATGTACATATATGTGTAAAACATAAA----------------------------------------------------------------------------CAACACTTTTGATCATCCGCTTAAAAAATGTACAAGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAAGACGCTGT---G-C-AGC-----------------AAAATGCAT
droWil2 scf2_1100000004768:431912-432141 - AACA---AACGGAAAGCCGAG--TGAAACA--AGAAATAAAGCGAGAGAGAAAGAAAGGAAAGAG------------A----GCCTAAGGAGCGCC----------CTAAC-AACTAACGGTTAGTTAGATA-AGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATATGGTAT-------------------------------------------------------------------------------------ATA---A---TAA---T---AATT-----TTAA------T-----------------------------------AACAAATC-----TTTCTTGACGTATGTAATAATAACGTAATAGAAACAT--------------TAATTTGTTTATTATTT---TCTACCCTATA------------------------ATTGGAC-----TATTGCAA-T---------C-----------GCCTTTTT
droVir3 scaffold_13049:16624909-16625114 - CACA---GAGATTCA---AAGATAGAAACGAAGAGAATAAGGCGAGCAAGAAAGAGAGAAA---GAGCTAAGACGA-GA---AACACAACAAAG----TCAT----TTACC-CACAAACGGTAAGTTTCTTA-GCAAAAGCTAATATTC-AACTCAAAAATAAACG---------------------TAAACAAAATG----------------------------------------------------------------TATATGC------ATATG-----TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA-----------------------TTGTT-------TT------------------------TTATAATAATT---T------TCCA-----TT-----------ACAATCAA
droGri2 scaffold_15110:16484600-16484660 + GACA---GAGAAAGA---GAG--AACTAAG--------------------------------------------GA-AA---ACCACAACAAAG--------TTAAATACC-AACTAACGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCCA---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-AATTAACGGTTAGTTGTGAA-GCTAA-----A-ACTGC------ACAATAAACA---------------------TA-------TCATGA-----------------------------------------------------------------------------------------------------------------ACATAAGAAG--------------------------------------------------------------------------------------AGGGGCATTT-GGT----------------TTT---T---TGA---T---ATTT-----TGGG------TATCAGCATCT--------ACATCAACTTGTTTTGAATCGAACT-----GATTTTAACA--TGCATTTGGACCAAACTAACAACGTTTCGAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................AACAGAGTGGAG----------ATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1613.00300000000003000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAACT-----GATTTTAACA--TGCATTTG.........................................................................................................................................2411.00100010000000000000
............................................................................................................................................................................................A-------TCATGA-----------------------------------------------------------------------------------------------------------------ACATAAGAAG--------------------------------------------------------------------------------------A..................................................................................................................................................................................................................................................................................1811.00100000100000000000
...........TCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000100000000
.....................................................................................ACAGAGTGGAG----------ATAAC-AATTAACGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000001000000
.......................TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100000000000000
...........TCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000100000000
......................................................................................CAGAGTGGAG----------ATAAC-AATTAACGGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
..CA---GAAGTCAA---AAG--TGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000001000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTA-TATT-----AT-----------ACCATA..1720.50100000001000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................ATTT-GGT----------------TTT---T---TGA---T---.................................................................................................................................................................................................................................15200.05100000000001000000
droSec2
GCCA---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-AATTAACGGTTAGTTGTGAA-GCTGA-----A-ACTGC------ACAATAAACA---------------------TA-------TCATG-------AAAAA-------------------------------------------------------------------------------------CTCTAT--------AAAACATA-CAAG--------------------------------------------------------------------------------------GGGGGAATTT-CGT----------------CTT---T---TAA---T---ATTT-----TGGG------TATCAGCATCT--------ACATCACCTGGTTTCGAATCAAACT-----GATTTTAACA--TGCATTTGGACCAAACTAACAACGTTTCGAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................AACAGAGTGGAG----------ATAAC-AATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
..................AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
..................AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
.........................AAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010010
....................G--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
....................................................................................................................................................................................................................................................................................................................................................................................................................................T-CGT----------------CTT---T---TAA---T---ATTT-----TGGG------..............................................................................................................................................................................................................2011.0011000
...........................................................................................TGGAG----------ATAAC-AATTAACGGTTT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
.....................................................................................ACAGAGTGGAG----------ATAAC-AA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
....................................................................................AACAGAGTGGAG----------ATAAC-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010001
dm3
GCCA---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-AATTAACGGTTAGTTGTAAA-GCTAA-----A-ACTAC------ACAATAAACA---------------------TA-------TCATG-------AAAAA-------------------------------------------------------------------------------------CTTTAT--------AAAACATAAGAAG--------------------------------------------------------------------------------------GGGGGCATTT------------------------------TAT---T---ATTT-----TGGG------TATCAGCATTT--------ACATCACCTTGTTTCGAATCAAACT-----GATTTTAACA--TGCATTTGGACCAAACTAACAACGTTTCGAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...A---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................AG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2513.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................TGGAG----------ATAAC-AATTAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000
..............A---AAG--TGAAGCG-----------------------------------------------G----AAAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AACAGAGTGGAG----------ATAAC-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................AAAACATAAGAAG--------------------------------------------------------------------------------------GGGGGCATTT------------------------------...........................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................GTGGAG----------ATAAC-AATTAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000
....................G--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000
.......GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
............................CG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CG-----------------------------------------------G----AAAACAGAGTGGAG----------ATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..............A---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................AAAACAGAGTGGAG----------ATAAC-AATTAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000
..................AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGAAGCG-----------------------------------------------G----AAAACAGAGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............AA---AAG--TGAAGCG-----------------------------------------------G----AAAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............AA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACA--TGCATTTGGACCA....................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................AGCG-----------------------------------------------G----AAAACAGAGTGGAG----------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GAAGCG-----------------------------------------------G----AAAACAGAGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................A-------------------------------------------------------------------------------------CTTTAT--------AAAACATAAGAAG--------------------------------------------------------------------------------------GG.................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..................AAG--TGAAGCG-----------------------------------------------G----AAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GAAGCG-----------------------------------------------G----AAAACAGAGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........TCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................TGTAAA-GCTAA-----A-ACTAC------ACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-AAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTAACA--TGCATTTGGACC.....................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AACAGAGTGGAG----------ATAAC-AATTAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TC------------------------TTATGGAAATGGTATTGCTA-..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............A---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...A---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................AAACAGAGTGGAG----------ATAAC-AA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.........................AAGCG-----------------------------------------------G----AAAACAGAGTGG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.............AA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGTGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................AACAGAGTGGAG----------ATAAC-AATTAACGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..........................AGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGCATTT--------ACATCACC...................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
...................AG--TGAAGCG-----------------------------------------------G----AAAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................GAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-AA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATC-------TC------------------------TTATGGAAATGGTATTGC.................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
..........................AGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.CCA---GAAGTCAA---AAG--TGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TGAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................GAAGCG-----------------------------------------------G----AAAACAGAGTGGAG----------ATAAC-..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
ACCA---GAAGTCAA---AAG--TGAAGTG--------------AA----------------------------GAGG----AAAACAGAGAGGAG----------ATAAC-AATTTACGGTTAGTTGAGAG-C-TGA-----G-ACTGCC-----AC----------------TGTCAAATAAACATA-------CCATACAAATTGGAAAA---------------------------------------------------------------------------------------------------------------G------------------------------------------------------------------------------GGGAA---AGGGGCCTTT------------------------------T------------------------------TTAGCATCG--------ACATCACCTCGTTTTGAAACAAACT-----GATTTTAACA--TGCATTTGGACCAAACTAATAACGTTTCGAGTG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................AGAG-C-TGA-----G-ACTGCC-----AC----------------TG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
.............................................A----------------------------GAGG----AAAACAGAGAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000000
droYak3
GCCA---GAAGTCAA---AAG--TGAAGAG-----------------------------------------------G----AAAACAGAGAGGAG----------ATAAC-AGTTAACGGTTAGTTGAAAG-C-TTA-----A-ACTGC------AAAATAAACA---------------------TACATA---TCATACAAATTGGAAAA-------------------------------------------------------------------------------------CTTTTT--------CAAACATA---CG--------------------------------------------------------------------------------------AGGGGCATTTTCG-----------------------------ATATTTCAATTT-----TGGC------TCTAAGCATCA--------ACATCACCTTGTTTTGAAGCAAACC-----GATTTTAACA--TGCATTTGGACCAAACTAATAGCGTTTCGAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGTATTGCTA-TATT-----AT-----------ACCATCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................G-----------------------------------------------G----AAAACAGAGAGGAG----------ATAAC-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200000020000
.........AGTCAA---AAG--TGAAGAG-----------------------------------------------G----AAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGT......................................2511.00100000010000
..........................AGAG-----------------------------------------------G----AAAACAGAGAGGAG----------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................AAGAG-----------------------------------------------G----AAAACAGAGAGGAG----------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.....................................................................................ACAGAGAGGAG----------ATAAC-AGTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATG-----------------------TTATC-------TC------------------------TTATGGAAATGGTA.....................................2611.00100010000000
.....................................................................................ACAGAGAGGAG----------ATAAC-AGTTAACGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
..CA---GAAGTCAA---AAG--TGAAGAG-----------------------------------------------G----A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
GCCA---GAAGTTAA---AAG--TGAAGCG-----------------------------------------------G----AAAGCAGAGAGGAG----------ATAAC-AGCTAACGGTTAGTTGGGAAGCTTTA-----A-AACGA------AAAATAAACAAAGTTTATAG-----------------------------------------------------------------CTGTGCTTTGTAACATATACATA------------------------------------------------CAAATATC---AG--------------------------------------------------------------------------------------CAGGGGGTTTCTGC----------------CTG---A---TGA---T---ATTT-----TTAT------TATCAA-------------ACATCATCTTT-TTCGA-----TTT-----CATTTTAACA--TGAATTTGGCCTAAACTAATCAAATTTTGAATA-----------------------ACTAT-----GA------------ATATGTAGATCGTTTTATGAACATTATAT-------AT------AC-ACGCTCTGTATACATCATSizeHit CountTotal NormTotal
No Reads
droBia1
ACCA---GAAGTTAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGAGAGGAG----------ATAAC-AACTAACGGTTAGTTGCAGA-CCTTA-----A-TCTAT------AA-----AAA---------------------TA-------CCA-----------------------------------------------------------------------------------------------------------------------------GGCAGAGCTAAAAACCATCATCAAAATTGTAT--A-CTATTAGA--------------------------------------------------------TTTTTTTTT--------------------G---------------TACCATGCCAA-------A---------------------------TACCAAATG-----ATTTTTGATA--TGAATTCGGACCAAACTAATGGCATTTCGAAAGAAACAATA---------------------------------------ATATGTACATTTCGTTATGATAATGGTAGTGCTA-TAC------ATAGCGCCGTGTGGACATCATSizeHit CountTotal NormTotal
No Reads
droTak1
ACCA---GAAGTCAA---AAG--TGAAGCG-----------------------------------------------G----AAAACAGA--GGAG----------ATAAC-AACTAACGGTTAGTTGCAAA-CTTCC-----A-ACTGA------GAAATAAACAAAGC-TAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------GCTAAAAAATATCATCAAAATAGTCG--AGATATGAGG--------------------------------------------------------TTTTTTTTACCATGTCACTGTTAATAATAA---------------TATCATGCCAA-------ATCT--------TCATCACCTTGTTTTGA----------------------------ATCTGGACCAAACTAATA------------------------------------------------------------TATGCAAATCTCATTATGGAAATGGTATTGCTC-TACT-----ATACCCCCGTTTATACATCATSizeHit CountTotal NormTotal
No Reads
droEle1
A------------------AG--CGAAGCG-----------------------------------------------A----AAAACAGAGAGGAG----------ATAAC-AACTAACGGTTAGTTGCGAA-CTTCA-----G-AACGA------AACATAAACAAAAGTTATTGTA----------------------------------------------------------------------------------------------------TA-----ATTAATTCGTATATTTTATAGTAATTAAAAATATC---AG--------------------------------------------------------------------------------------AGGGGTATTTTTA---------CCACAGCTTTA---A---TGA---T---ATCT-----TCAT------AATTCA--CTAAAATATTTTTAAAACCTTGTTTCGATTTCATTTAATAAGATATTTTTA--TGAATTCGGACCAAACCAATAACATTTCGAATG-----------------------ACATT-----AAA-------AAATAGATGTGGATCTTACTATGGAATTAGTGTTGCTA-TAC------AC----ATGTGTGCACATCATSizeHit CountTotal NormTotal
No Reads
droFic1
A------------------AG--CGAAGTG-----------------------------------------------G----AAAACAGAAAGGAG----------ATAAC-AACTAACGGTTAGT-GCGAA-CTTCA-----A-ACCGA------AACATAAACAAAAGTTGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------GC-------TATCATCTAAATTGTTT--A-ACATAATCTATACCCTACTA-CCTCACTTAAAAATTCAAAAAGTACTCAATATCGACAGTT-GAT----------------ATG---C---TGA---T---ATTT-----TAGT------A-------ACC--------AAACCACCC---------------------------CATA--AGAATTTGAAACAAACTCATACGATTTCGAATG-----------------------ACACT-----AAAATTATGAAAA--------------------AAGATGGTGT---T-C-ACTGTAAT------CTGTGTTTACATCATSizeHit CountTotal NormTotal
No Reads
droKik1
AGCA---GAAGAAGA---TAG--CGAAGAG-----------------------------------------------T----A-GACGCAGAAGAG----------ATAAGAAAATAACGGTTAGTGGCGAA-CTTCA-----C-CTCAA------AACATAAACAAAAGTAGAA-----------------------------------------------------------------------------------------------------------------------------------------------------------AC-------TAAAATCA----------------------------------------------------------------------------------------------------T---AAA---T---TATTCAGTTATCATACCAA-------AATT--------TTATTAAATT-------A-CTGAGT-----GGCTTT---A--TTAAATCAGGCCAAAAAATTAACATTAAAAAT-------------------TATTATTAAC-------CA------------------------TTTCGGACAT--CATTAGTG-TGTG-----T-----------AAACACCATSizeHit CountTotal NormTotal
No Reads
droAna3
CCCATCAGAAGAAGA---AAG--CAGAGAG-----------------------------------------------G----AAATAAGCCATAAG----------ATAAC-CACTAACGGTTAGTTGCGAA-CTTTA-----C-TTCGA------AACATAAACAA---------------------TAACTAAAAAA----------TACACTGACAT------------------------------AAAA-------------------------------------------------------------------------------------TGTTGTCTAAACAGTATTTAGAAATCATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACATTATCT---TCTCACTGGTA------------------------TTTTGGCCATGCTGTTGCCC-TTTG-----A-----------AAACATCATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................AG--CAGAGAG-----------------------------------------------G----AAATAAGCCATAAG----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000010
...................AG--CAGAGAG-----------------------------------------------G----AAATAAGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...........AAGA---AAG--CAGAGAG-----------------------------------------------G----AAAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000100
.......GAAGAAGA---AAG--CAGAGAG-----------------------------------------------G----............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.............GA---AAG--CAGAGAG-----------------------------------------------G----AAATAAGCCATA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
..................AAG--CAGAGAG-----------------------------------------------G----AAATAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
......................................................................................AAGCCATAAG----------ATAAC-CACTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
droBip1
CCCAGCAGAAGAAGC---GAG--CAGAGAG-----------------------------------------------G----AATTAAGCCGAAAG----------ATAAC-CACTAACGGTTAGTTGCGAA-CTTTA-----C-TTCGA------AACATAAACAA---------------------TAACTAAATAA----------TACACTGACGT------------------------------TAAA----------------------------------------------------------------------------GTTT-----AGTTGTCTAAACCATACCTCGAA------ATCACTT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTACATTATCG---TCACCCTGGTA------------------------TTTTGGCCATGCTCTTGCCC-TCCG-----G-----------AAACATCATSizeHit CountTotal NormTotal
No Reads
dp5
GCAA---AA-GAAGA---AAC--CAAAGGA-----------------------------------------------GACGGAAGACAAGAAAGAGCGCGACTTACGCAGC-AAATAACGGTTAGTTTCATC-C-----ACCAGCATTC-CACCCCAAAACCAAAC----------------C----AAAACAAAATAA----------AAAAAAA----TATGTTTGGAACTCATCGGACGAGTGTTATAAAATATATACATATATGT------ATGTGTAAAACATAAA----------------------------------------------------------------------------CAACACTTTTGATCATCCGCTTAAAAAATGTACAAGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAACACGCTGT---G-C-AGCAAAAT------GCATCGAAAAATCACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..................AAC--CAAAGGA-----------------------------------------------GACGGAAGACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
.........................................................................................GAAAGAGCGCGACTTACGCAGC-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001000
..................AAC--CAAAGGA-----------------------------------------------GACGGAAGACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
droPer2
GCAA---AA-GAAGA---AAC--CAAAGGA-----------------------------------------------GACGGAAGACAAGAAAGAGCGCGACTTACGCAGC-AAATAACGGTTAGTTTCATC-C-----ACCAGCATTC-CACCCCAAACCAAACC---------------------AAAACAAAATAA----------AAAAAAAAAATTATGTTTGGAACTCATCGGACGAGTGTCATAAAATATGT--ATATATGTACATATATGTGTAAAACATAAA----------------------------------------------------------------------------CAACACTTTTGATCATCCGCTTAAAAAATGTACAAGTACT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATCAAGACGCTGT---G-C-AGC-----------------AAAATGCATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
AACA---AACGGAAAGCCGAG--TGAAACA--AGAAATAAAGCGAGAGAGAAAGAAAGGAAAGAG------------A----GCCTAAGGAGCGCC----------CTAAC-AACTAACGGTTAGTTAGATA-AGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTATATGGTAT-------------------------------------------------------------------------------------ATA---A---TAA---T---AATT-----TTAA------T-----------------------------------AACAAATC-----TTTCTTGACGTATGTAATAATAACGTAATAGAAACAT--------------TAATTTGTTTATTATTT---TCTACCCTATA------------------------ATTGGAC-----TATTGCAA-T---------C-----------GCCTTTTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................GAAATAAAGCGAGAGAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00200200
.................................................GAAAGAAAGGAAAGAG------------A----GCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
............................................................AAGAG------------A----GCCTAAGGAGCGCC----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200
.....................................................GAAAGGAAAGAG------------A----GCCTAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..CA---AACGGAAAGCCGAG--TGAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
.......................................................................................................................GGTTAGTTAGATA-AGAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT.....................................................................................................................................................................................................................................................................................................................................................1911.00100100
................................................................G------------A----GCCTAAGGAGCGCC----------CTAT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
...................................AATAAAGCGAGAGAGAAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
......................................AAAGCGAGAGAGAAAGAAAGGAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
.....................................................................................TAAGGAGCGCC----------CTAAC-AACTAACGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100010
.................................................GAAAGAAAGGAAAGAG------------A----GCCTAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
.....................................TAAAGCGAGAGAGAAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
.............................A--AGAAATAAAGCGAGAGAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
.....................................................GAAAGGAAAGAG------------A----GCCTAAGGAGCGCC----------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
.......................................................AAGGAAAGAG------------A----GCCTAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...........................................GAGAGAGAAAGAAAGGAAAGAG------------A----GC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
..............................................................GAG------------A----GCCTAAGGAGCGCC----------CTAAC-A.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100001
.......................................................AAGGAAAGAG------------A----GCCTAAGGAGCGCC----------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
........................................................AGGAAAGAG------------A----GCCTAAGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100
..............AGCCGAG--TGAAACA--AGAAATAAAGCGAGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100
...........................................................AAAGAG------------A----GCCTAAGGAGCGCC----------CT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..................................................................................GCCTAAGGAGCGCC----------CTAAC-AACTAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAC-----TATTGCAA-T---------C-----------GCC.....1920.50110000
......................................AAAGCGAGAGAGAAAGAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33100010
droVir3
CACA---GAGATTCA---AAGATAGAAACGAAGAGAATAAGGCGAGCAAGAAAGAGAGAAA---GAGCTAAGACGA-GA---AACACAACAAAG----TCAT----TTACC-CACAAACGGTAAGTTTCTTA-GCAAAAGCTAATATTC-AACTCAAAAATAAACG---------------------TAAACAAAATG----------------------------------------------------------------TATATGC------ATATG-----TAT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATA-----------------------TTGTT-------TT------------------------TTATAATAATT---T------TCCA-----TT-----------ACAATCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................................................AGAAA---GAGCTAAGACGA-GA---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000001000000000000000000000000000000000000000000000
.........................................................................CGA-GA---AACACAACAAAG----TCAT----....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000100000000000000000000000000000000000000000
.................................AGAATAAGGCGAGCAAGAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000010
..........ATTCA---AAGATAGAAACGAAGAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000100000000000000000000000000000000000000000000000000000
.......................................................................GACGA-GA---AACACAACAAAG----T...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
....................................................AGAGAGAAA---GAGCTAAGACGA-GA---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
.......................................AGGCGAGCAAGAAAGAGAGAAA---G.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
............................................AGCAAGAAAGAGAGAAA---GAG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000010000000000000000000000000000000000000000000000000000000
.........GATTCA---AAGATAGAAACGAAGA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
...............................................AAGAAAGAGAGAAA---GAGCTAAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000001000000000000000000000000000000
...................................................................CTAAGACGA-GA---AACACAACAAAG----TCAT----T...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
..........................................................AAA---GAGCTAAGACGA-GA---AACACAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................ACACAACAAAG----TCAT----TTACC-CACAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
droGri2
GACA---GAGAAAGA---GAG--AACTAAG--------------------------------------------GA-AA---ACCACAACAAAG--------TTAAATACC-AACTAACGGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...........AAGA---GAG--AACTAAG--------------------------------------------GA-AA---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101
...A---GAGAAAGA---GAG--AACTAAG--------------------------------------------GA-AA---ACC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110
..............................................................................A---ACCACAACAAAG--------TTAAATA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110
........................................................................................ACAAAG--------TTAAATACC-AACTAACG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00110
.............GA---GAG--AACTAAG--------------------------------------------GA-AA---ACCACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101
GACA---GAGAAAGA---GAG--AACTAA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00110

Generated: 05/18/2015 at 11:22 PM