ID:

dsi_9339

Coordinate:

3l:11849331-11849392 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-6.1	-6.1	-5.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTGGTACTGAACGGATTGTGGGTGGACAATAGCGGCACTTGCCACAGCAGTAAGTGTGGAATATCCTGTATTCCTGTAGAATTTCGTATTTTCATTTAACGTTTGTGATAGTTTTTATTTTCTGTTGAAACAAACTGAGCGGACGACGACCATATCGATAA ************************************************.((((((.(((((((.....((((.....))))...))))))))))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M053 female body	SRR553487 NRT_0-2 hours eggs	M024 male body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
........................................................................TCCTGTAGAATTTCGT..........................................................................	16	0	1	1.00	1	0	1	0	0	0
......AATGAACCGATTGTGGGGGGA.......................................................................................................................................	21	3	1	1.00	1	1	0	0	0	0
....................................................AAGTCTGGAGGATCCTGTAT..........................................................................................	20	3	5	0.20	1	0	0	1	0	0
...GCTAATGAACCGATTGTGGG...........................................................................................................................................	20	3	5	0.20	1	1	0	0	0	0
.............................................................................................................................GTCAAACAAACTGCGCGGAC.................	20	3	6	0.17	1	0	0	0	1	0
......................................................................................................TTTGTGAAAGTTTTTATCT.........................................	19	2	9	0.11	1	0	0	0	0	1
...CGTACTGAACGGATTGCT.............................................................................................................................................	18	3	20	0.10	2	0	0	2	0	0
......................................................................................................TTTGTGAAAGTTTTTATC..........................................	18	2	20	0.05	1	0	0	0	0	1
.....................................................................................................................................AACTGAGCGGACCGCG.............	16	2	20	0.05	1	0	1	0	0	0

Anti-sense strand reads

AAACCATGACTTGCCTAACACCCACCTGTTATCGCCGTGAACGGTGTCGTCATTCACACCTTATAGGACATAAGGACATCTTAAAGCATAAAAGTAAATTGCAAACACTATCAAAAATAAAAGACAACTTTGTTTGACTCGCCTGCTGCTGGTATAGCTATT ************************************************.((((((.(((((((.....((((.....))))...))))))))))))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	M053 female body	SRR618934 dsim w501 ovaries
...........................................................................................................................................TGCCTGCTGCTGGTATAGCTAT.	22	1	1	1.00	1	1	0	0	0	0
.........................................................................................................................................CTCGCCTGCTGTTGGT.........	16	1	4	0.25	1	0	1	0	0	0
....................ACCACCTCTTATCGCCGT............................................................................................................................	18	2	4	0.25	1	0	0	0	1	0
.........................................................................................................................................CTCGACTGCTGCCGGTAT.......	18	2	4	0.25	1	0	0	1	0	0
.........................................................................................................................................CTCGACTGCTGTTGGTATGG.....	20	3	7	0.14	1	0	1	0	0	0
.........................................................................................................................................CTCCCCTGCTGCCGGTA........	17	2	17	0.06	1	0	0	1	0	0
...................ACCCACTTGTTATCGATGT............................................................................................................................	19	3	20	0.05	1	0	0	0	0	1

Generated: 04/24/2015 at 10:39 AM