ID:

dsi_9300

 Coordinate:

3r:7760239-7760388 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.9 -17.9 -17.9 -17.9

Flybase annnotation

five_prime_UTR [3r_7760090_7760238_+]; exon [3r_7760090_7760238_+]; intron [3r_7760239_7764266_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAGTATAGAGGCTGTTGATAAGAAGGGTAGAGCGGTGTATGTGTATGTGTGTAAGTGCAGTGCGACGCCCTTTTGTCTTGAGAGGAAAAAGGAAGCCACTACTTTATTTATCGGTGTGCAATTATTCAAGCTGCCAATTAGCAGCCGACACACTTTCACTGCTCCCCATTGCTTAATTATGAGCAAAGGGGACAGCTGACTGCTTTGAATTGCCAAAAATCTCGGGCGCCGCCGTCTGGCCGGGCCCTTG
******************************************************************.................((......(((..................((((((...........(((((......)))))...)))))))))......))************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 M024
male body		 SRR1275487
Male larvae
........................................................................................................................................................................................................TGCTTTGAATAGCCAAAAATCTCGGG........................ 26 1 1 3.00 3 2 0 1 0 0 0 0 0 0 0 0 0
............TGTTGATAGGAAGGGTGGAG.......................................................................................................................................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGCTTTGAATAGCCAAAAATCTCGGGC....................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................................................................GCCCTTTTGTCTTGAGAGG..................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................ACACACTTTCACTGCTCC..................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
.............GTTGATAAGAAGGGTAGAGCGGTGTATG................................................................................................................................................................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................CTGACTGCTTTGAATTGCCAA.................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................GATAAGAAGGGTAGAGCGGTG..................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........AGGCTGTTGATAAGAAGGGTAA............................................................................................................................................................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.................ATAAGAAGGGTAGAGCGGTGC.................................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.......................AAGGTAGAACAGTGTATGTGT.............................................................................................................................................................................................................. 21 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................GCAAAGGGGACAGCTGACTGCTTTGA.......................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................AGCCACTACTTTATTTATCGG........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................AATTATGAGCAAAGGGGACAGT...................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................GTAAGTGCAGTGCGACGCC..................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...................................................TAAGTGCAGAGCGACGTC..................................................................................................................................................................................... 18 2 2 0.50 1 0 0 0 0 0 0 0 1 0 0 0 0
....ATAGAGGGTGTAGATAAGT................................................................................................................................................................................................................................... 19 3 11 0.27 3 0 0 0 0 0 0 0 0 0 0 2 1
...........................................GATGTGTGTAAGTGGAGTG............................................................................................................................................................................................ 19 2 5 0.20 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................TGTTTGTAAGGGCAGTGAGA......................................................................................................................................................................................... 20 3 5 0.20 1 0 0 0 0 0 1 0 0 0 0 0 0
......................ATGGTTAGAGCGGTGTA................................................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................TTTTTTCTCGTTGTGCAATTAT............................................................................................................................. 22 3 8 0.13 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CTCTCGGGCGCCGCCT................ 16 2 20 0.10 2 0 0 0 0 0 0 0 0 2 0 0 0
.................ATAAGGACAGTAGAGCGGT...................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0 0 0
..............................................................CGAGGCCCTTTCGTCTTCA......................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 1 0 0 0 0
..........................GTAGAGCGTTGTATGTA............................................................................................................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
........................AGGTAGAGCGTTGTATG................................................................................................................................................................................................................. 17 2 15 0.07 1 0 0 0 0 0 1 0 0 0 0 0 0
................................ATGTGTATGTGTATGTGTGTAA.................................................................................................................................................................................................... 22 2 19 0.05 1 1 0 0 0 0 0 0 0 0 0 0 0
........................GGTTAGAGCGGTGGAT.................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTCATATCTCCGACAACTATTCTTCCCATCTCGCCACATACACATACACACATTCACGTCACGCTGCGGGAAAACAGAACTCTCCTTTTTCCTTCGGTGATGAAATAAATAGCCACACGTTAATAAGTTCGACGGTTAATCGTCGGCTGTGTGAAAGTGACGAGGGGTAACGAATTAATACTCGTTTCCCCTGTCGACTGACGAAACTTAACGGTTTTTAGAGCCCGCGGCGGCAGACCGGCCCGGGAAC
*************************************************************************************.................((......(((..................((((((...........(((((......)))))...)))))))))......))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
........................CCCATCTCGCCACATACACATAGTCT........................................................................................................................................................................................................ 26 3 1 2.00 2 2 0 0 0 0 0 0 0
...................................................................................................................................ACGGTTAATCGTCGGCTGTGT.................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0
.........................CCATCTCGCCACATACACATAGTCT........................................................................................................................................................................................................ 25 3 1 1.00 1 1 0 0 0 0 0 0 0
............................................................................................................................................GGTCGGCTGTGTGAAAGTGAC......................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0
..............................................................GCTCCGGGAAAGCAGAA........................................................................................................................................................................... 17 2 11 0.64 7 0 7 0 0 0 0 0 0
............................................................ATGCTCCGGGAAAGCAGAA........................................................................................................................................................................... 19 3 10 0.50 5 0 5 0 0 0 0 0 0
................................................................................................................................................................................................................................CCGCGGCTGCAGTCCGTCCCG..... 21 3 2 0.50 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................................AGACGGGCCCGGGAAC 16 1 2 0.50 1 0 1 0 0 0 0 0 0
..........................................................................................CCTTAGGGGATGAAATATATA........................................................................................................................................... 21 3 11 0.27 3 0 0 0 0 0 0 3 0
...........................................................................AGAACTCACCTTGGTCCTTC........................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................CGACGATACTTAACGGTTATT............................... 21 3 6 0.17 1 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................GGTTTTTAGAGCTCGTGGCA.................. 20 3 8 0.13 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................................CTGCGGCGCCAGTCCGGC........ 18 3 20 0.10 2 0 0 0 0 0 0 0 2
.............................................................................................TAGGTGTTGAAATAAATAG.......................................................................................................................................... 19 2 13 0.08 1 0 1 0 0 0 0 0 0
...............................................................CTCCGGGAAAGCAGAAGTC........................................................................................................................................................................ 19 3 14 0.07 1 0 1 0 0 0 0 0 0
..............................................................................................................................................TCGGCTGTGTGAAACGG........................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................................................................................AGCAAACGGGCCCGGGAAC 19 3 20 0.05 1 0 1 0 0 0 0 0 0
.....................................................TCAGGTCACTCTGCGG..................................................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................AAATTGACGTGGGGTAAGGA............................................................................. 20 3 20 0.05 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................CAAACGGGCCCGGGAAC 17 2 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:7760189-7760438 + dsi_9300 AAGTAT-------------------------AGAGGCTGTTGATA--AGAAGGGT----AGAGCGGT---------------------------------G--TA----------------------------TGTGT--ATGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCAGC------------------------------------------------------------CGACACACTTTCACTGCT----CCCCA-------TTG---CTTAATTATGAGCAAAGGGGACAGCTGAC---------------------------------------TGCTTTGAA--TTGCC-AAAA--ATCTCGGGCGCCGCCGTCTGGCCGGG----------------------CCCT-TG-
droSec2 scaffold_12:654570-654819 + AAGTAT-------------------------AGAGGCTGTTGATA--AGAAGGGT----AGAGCGGT---------------------------------G--TA----------------------------TGTGC--ATGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCAGC------------------------------------------------------------CGACACACTTTCACTGCT----CCCCA-------TTG---CTTAATTATGAGCAAAGGGGACAGCTGAC---------------------------------------TGCTTTGAA--TTGCC-AAAA--ATCTCGGTCGCCGCCGTCTGGCCGGG----------------------CCCT-TG-
dm3 chr3R:13507617-13507866 - AAGTAT-------------------------AGAGACTGGAGATA--AGAAGGGG----AGAGCGGT---------------------------------G--TA----------------------------CATGT--ATGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTTATTTATCGGTGTGCAATTATTCAAGG------TGCCAATTAGTAGT------------------------------------------------------------CGACACACTTTCACTGCT----CCCCA-------TTG---CTTAATTATGAGCAAAGGGGACAGCTGAC---------------------------------------TGCTTTGAT--TTGCC-AAAA--ATCTCGGGCGCCGCCGTCTGGCCGGG----------------------GCCC-TG-
droEre2 scaffold_4770:8123544-8123796 + AAATAT-------------------------ATAGGAAGGTGGTA--AGAAAGGG----AGAGCGGT---------------------------------G--TA----------------------------CGTGTGTGTGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTCATTTATCGGTGTGCAATTATTCAAGC------TGTCAATTAGCAGG------------------------------------------------------------CGACACACTTTCACTGCT----CCCCA-------TTG---CTTAATTATGAGCAAAATGGACAGCTGAC---------------------------------------TGCTTTGAT--TTGCC-AAAA--ATCTCGGGCGCCGCCGTCTGGCCGGG----------------------CCCT-AAC
droYak3 3R:2079954-2080197 - AAATAG-------------------------ATAGGGAGGTGAAA--AGAAAGGG----AGAGCGGT---------------------------------G--TA----------------------------CGTG----TGTGTGT-----------AAGTGCAGT---------------------------------------------------------GTGACGCCCTTTTGCCT---------TA-----------------A----------------------------------------------GAGGAAATAGGAA-GCT-----TTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCAGG------------------------------------------------------------CGACACACTTTCACTGCT----CCCAA-------CTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TGCTTCGAT--TTGCC-AAAA--ATCTCGGACGCCGCCGTCTGGCCGGG----------------------CCCT-AAC
droEug1 scf7180000409562:28096-28343 - ATAAAG-------------------------AAAG--AGGTGCAAGTTGAAAGGG----AGAGCGGT---------------------------------C--TA----------------------------TGTG----TGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAGAGGAA-GCCACTATTTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACTGGT----TCTCA-------TTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TAGTTTGAT--TTGCC-AAAA--ATTTCGGGCGCCGCCGTCTGGCTTGC----------------------CCCT-CC-
droBia1 scf7180000302402:8173503-8173761 - ACGCATCGG------GAGAGGGG------GT---------GATAA--AGAAAGGG----AGAGCGGT---------------------------------G--TGTTTG------------------------CGTGT--GTGTGTGT------------AGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------G----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACTGCC----TCTCG-------TTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TGGTTTGAT--TTGCC-AAAA-AATCTCGGCCGCCGCCGTCTGGCCTGC-A--------------------CCCC-CT-
droTak1 scf7180000415811:91655-91913 + AGAGAGGAGGAGAAAGAGAGGGG------GA---------CATAA--AGAAAGGG----AGAGCGGT---------------------------------G--TG----------------------------TGTG----TGGTTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------G----------------------------------------------GAGGAAAAAGGAA-GCCACTATTTTATTTATCGGTGTGCAATAATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACCGCT----TCTCA-------CTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TTGTTTGAT--TTGCC-AAAAAAATCTCGGCCGCCGCCGTCTGGCCCAC-A----G---------------CCC-----
droEle1 scf7180000491080:2772465-2772707 + AGAGAC-------------------------AGAGAGAGGCAGAA--GGAAATGA----AGAGCGGT---------------------------------G--CA----------------------------TGAA------GGTTT-----------AAGTGCGGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TC-----------------A----------------------------------------------GAGGCAAAAGGAA-GTTATAA--TTATTTATCGGTGTCCAATTATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACTGTT----TCTCA-------TTG---CTGATTTATGAGCTAAAGGGACAGGTGAC---------------------------------------TTGTTTAGT--TTGCC-AAAA--A-CTCGGGCGCCACCGTCTGGCCTTC----------------------TCTT-AA-
droRho1 scf7180000778039:55028-55274 + GAGGAG-------------------------GG------GGAGAA--AGAAAGGG----GGAGCGGT---------------------------------G--TA----------------------------TGTA------GGTTT-----------AAGTGCGGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------C---------------------------------AATTGA-------AAGGAAAAAGGAA-GCCACTA--TTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAACGGC------------------------------------------------------------CGACATACTTTCACTACT----TCTCA-------TTG---CTTAATTATGAGCAAAAGGGACAGGTGAC---------------------------------------TTGTTTCAT--TTGCC-AAAA--ATTTCGGGCG---CCGTCTGGCCTGC-T----CTGGC-----------CCCC-CT-
droFic1 scf7180000453912:1969228-1969463 + AGAGAC-------------------------------AGGTAGAA--AGAAAGGG----AGAGCAGT---------------------------------G--TA------------------------------------TGTGTGC-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACGAC--TATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACTGCT----TCTTA-------TTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TTATTTGAT--TTGCC-AAAA--ATCTCGGGCGCCGTCGTCTGGCCGTC----------------------TCCC-CG-
droKik1 scf7180000302461:1007764-1008073 + AAAAAT-------------------------GG--------------AGAAGGGC----CGAGCGGT---------------------------------G--TG----------------------------GGCG----AGTGTGC-----------AACTGCAGTAGATTT-GTT--GATT---TTTTTAAG-------------------------CGGCAGCGACGCCCTTTTGTCT---------TG-----------------T-------------------------------CTTATCGAAATCGAAGAGGAAA-------TCCA-----TGATTTATCAGTGTGCAATTATT-------------CCAATTAGCGGC------------GAAGAAGAGGAAGAAGCCTCGAC---CAAC----------------ACCGACATACTTTCACTGCT----CCAC----------T---CTTAATTATGAGTAAAAGGGACAGCTGACACAAA--GGC-------------CTGGCA-------GATTTATTTGAT--TTGCC-AAAA--ATTTCGGACGCCGCCGTCTGGCCTGC-T----A--------CCGTGC-CCCC-TT-
droAna3 scaffold_13340:5798219-5798583 - AGAGAG-----------------------------------------------TC----CGAGCGGCATTAGTGCAAA-----------------------TGTGTTTGTGTGTGTGTGAGAGTGAGTGTGTCT----------GTGTATG---TGCTGAGGTGCACTGCATTTTGT---TGTT---TTTCTAAG-------------------------AG--AGAGACGCCCTTTTGTCT---------TC-----------------G------------------------------------C---------GATGCCAAAGAAA-GCG-GTAT----TTTATGGGTTTGCAATTATTCTTTG------TGCCAATTAGAAGTCCAATTAGCGCAGGAGAGGAGGAAGGTGGGGGGGC---GAAAATCT----------------CGCCACTTTCACTGTCTTGCTGCCACCACAACTTGCCACTTAATTATGAGTAAAAGGGACAGCTGACACAAA--GGC-------------CTTGCA-------GATTTATTTGAT--TTTCC-CGAA--AAGTCGGGCGCCGCCGTCTGGCCACC-T----A--------C------CACT-CC-
droBip1 scf7180000396708:3015927-3016305 + AAAAACTAATAGGAAATTACAGGGACAGAGC---------GATGG--AGAGAGAC----CGAGCGGCATTAGTGCAAG-----------------------TGTGTTG----------------------------------GTGTGTATGCGCTGCTGAGGTGCACTGCATTTTGT---TGTT---TTTATAAG-----------------------------AGAGACGCCCTTTTGTCT---------TC-----------------T------------------------------------TGAAGT----CAG--CAAA-GAAAG-CGGTAT----TTTATGGGTTTGCAATTATTCTTTG------TGCCAATTAGAAGTCCAATTAGCGCCGAAGGGGAGGAGG--------GCGAGGAAAATCTCGCCACGGCATTCGT-GTGTACTTTCACTGTC----CCAAC-------TTGCCACTTAATTATGAGTAAAAGGGACAGCTGACACAAA--GGC-------------CTTGCA-------GATTTATTAGATTTTT-CCCA-AA--AAGTCGGGCGCCGTCGTCTGGCCACC----------------------TCCTATG-
dp5 2:23681444-23681853 + AGAGAA-------------------------T----------------------TCGAC--------TGTGCGGCAAG-----------------------TGGG-----------------------------GT----GTCTGTGT-----------GAGTGCAGTGCATGGTGT---TGTGGTGTTTGTGTGTCGGACAGACGGCTTGTGGCGACGGTGGCAGCGACGCCCTTTTGTCT---------TC-----CTTCCACTCGTGACAGACACAA-------AGCGGCTCTCGGGCTCTTGC------------------A-GAA-ACCACT-----ATTTATTCGGGTGCAATTATCAAAGG-T-GTTTGCCAATTAGATGCCTAATTAG-----------A-----------------GGAAAATATCTCAATGGGATGAATGGCATACTTTCACTCGTGTGCCCCGA-------TTACGATTTAATTATGAGCAAAAGGGACAGCTGACACAAA--GAAAACCAGCAGCCAGCGAGCAGA--ATTTATTTGTTTGAT--TTGCC-AAAA--A-CTTGTGCGCCGCCGTCTGGGCTGC-T----CCGCCGCTGCGCTACGCCCT-TG-
droPer2 scaffold_3:6459497-6459906 + AGAGAA-------------------------T----------------------TCGAC--------TGTGCGGCAAG-----------------------TGGG-----------------------------GT----GTCTGTGT-----------GAGTGCAGTGCATGGTGT---TGTGGTGTTTGTGTGTCGGACAGACGGCTTGTGGCGACGGTGGCAGCGACGCCCTTTTGTCT---------TC-----CTTCCACTCGTGACAGACACAA-------AGCGGCTCTCAGGCTCTTGC------------------A-GAA-ACCACT-----ATTTATTCGGGTGCAATTATCAAAGG-T-GTTTGCCAATTAGATGCCTAATTAG-----------A-----------------GGAAAATATCTCAATGGGATGAATGGCATACTTTCACTCGTGTGCCCCGA-------TTACGATTTAATTATGAGCAAAAGGGACAGCTGACACAAA--GAAAACCAGCAGCCAGCGAGCTGA--ATTTATTTGTTTGAT--TTGCC-AAAA--A-CTTGTGCGCCGCCGTCTGGGCTGC-T----CCGCCGCTGCGCTACGCCCT-TG-
droWil2 scf2_1100000004943:3609595-3609947 + ATGCAC-------------------------TGAT-----CATTA--ATAGCGTG----TGTGCGGC--------AGTTTCTGTATTGTTTCTGCCCAATGTGTGTCAG------------------------TGT----GTGTTTGT-----------GAGTGCAGTGCATTTTGT---TGTT---TTC----------------------------GGTG--TGCGACGCCCTTT-GACTGCGCTGCTTTGTGCTGATTCTAC------GAGACACGAGTCTCAACTCGT-------------------------------------------------------TTCTAATGCAATTATTATTTGGTATTTTGTCAATTAAA---------------------------------------------------------------TTGCATACTTTCACTTCA-----------------------------AAACGAAAAAGGGACAGCTGAGACGAGACGCACACACACATCAAGAGAGAAGAAAATTAATTTATTTGAT--TTGCC-AAGA--A-CTTGTGCGCCGCCGTCTGGCCTGTCTACATATGTCTCTGTCCTGT-CCTT-TG-
droGri2 scaffold_14906:12147295-12147402 + TTGCAT-------------------------AAAG--------TA--AAAGCAGG----TCCACGGA---------------------------------A--CGTGTG------------------------CGTATGTTTGTGTAT------------TGTGCAGGGCATTT-GTTGTTGT---------------------------GTAGCGACAACAGCAGCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGTAT-------------------------AGAGGCTGTTGATA--AGAAGGGT----AGAGCGGT---------------------------------G--TA----------------------------TGTGT--ATGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCAGC------------------------------------------------------------CGACACACTTTCACTGCT----CCCCA-------TTG---CTTAATTATGAGCAAAGGGGACAGCTGAC---------------------------------------TGCTTTGAA--TTGCC-AAAA--ATCTCGGGCGCCGCCGTCTGGCCGGG----------------------CCCT-TG-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................GCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGG..........................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACACTTTCACTGCT----CC...................................................................................................................................................................1811.00100001000000000000
......................................GTTGATA--AGAAGGGT----AGAGCGGT---------------------------------G--TA----------------------------TG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAC---------------------------------------TGCTTTGAA--TTGCC-AA............................................................2111.00100000010000000000
.........................................GATA--AGAAGGGT----AGAGCGGT---------------------------------G--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000010000
.................................AGGCTGTTGATA--AGAAGGGT----AA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000010000
..........................................ATA--AGAAGGGT----AGAGCGGT---------------------------------G--C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGGGACAGCTGAC---------------------------------------TGCTTTGA.......................................................................2611.00100000000000001000
.........................................................................................................................................................................................................................................................................................................................................A-GCCACTACTTTATTTATCGG............................................................................................................................................................................................................................................................................................2111.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTATGAGCAAAGGGGACAGT..........................................................................................................................2211.00100000000000001000
..................................................................................................................................................GT-----------AAGTGCAGT---------------------------------------------------------GCGACGCC..................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000000000000000
droSec2
AAGTAT-------------------------AGAGGCTGTTGATA--AGAAGGGT----AGAGCGGT---------------------------------G--TA----------------------------TGTGC--ATGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCAGC------------------------------------------------------------CGACACACTTTCACTGCT----CCCCA-------TTG---CTTAATTATGAGCAAAGGGGACAGCTGAC---------------------------------------TGCTTTGAA--TTGCC-AAAA--ATCTCGGTCGCCGCCGTCTGGCCGGG----------------------CCCT-TG-SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................AGGCTGTTGATA--AGAAGGGT----AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.....................................................GT----AGAGCGGT---------------------------------G--TA----------------------------TGTGC--ATGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
dm3
AAGTAT-------------------------AGAGACTGGAGATA--AGAAGGGG----AGAGCGGT---------------------------------G--TA----------------------------CATGT--ATGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTTATTTATCGGTGTGCAATTATTCAAGG------TGCCAATTAGTAGT------------------------------------------------------------CGACACACTTTCACTGCT----CCCCA-------TTG---CTTAATTATGAGCAAAGGGGACAGCTGAC---------------------------------------TGCTTTGAT--TTGCC-AAAA--ATCTCGGGCGCCGCCGTCTGGCCGGG----------------------GCCC-TG-SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGCGCCGCCGTCTGGCCGGG----------------------G.......2312.0020000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTG---CTTAATTATGAGCAAAGGGGAC.............................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---CTTAATTATGAGCAAAGGGGACAGC..........................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................CTACTTTATTTATCGGTGTGC.......................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCC-AAAA--ATCTCGGGCGC.............................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................ATTCAAGG------TGCCAATTAG...........................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................GT------------------------------------------------------------CGACACACTTTCACTGCT----CCCC.................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGC...................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................A--AGAAGGGG----AGAGCGGT---------------------------------G--....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
................................GAGACTGGAGATA--AGAAGGGG----................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGGCGCCGCCGTCTGGCC.................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACAGCTGAC---------------------------------------TGCTTTGAT--TTGC................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGCGCCGCCGTCTGGCCGG...............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAAAGGGGACAGCTGAC---------------------------------------...............................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.AGTAT-------------------------AGAGACTGGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACACACTTTCACTGCT----CCCCA-------TT.......................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................AGT------------------------------------------------------------CGACACACTTTCACTGCT----.....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATGAGCAAAGGGGACAGCT.........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................TGTGCAATTATTCAAGG------TGC..................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................AGCGGT---------------------------------G--TA----------------------------CATGT--ATGTGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................GACTGGAGATA--AGAAGGGG----AGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
......................................................................................................................................ATGT--ATGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCG.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
................................................................................................................................................................................................................................................CT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCC.............................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................GCCAATTAGTAGT------------------------------------------------------------CGACAC.....................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
........................................................................................................................................GT--ATGTGTGT-----------AAGTGCAGT---------------------------------------------------------GC........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGAGCAAAGGGGACAGC..........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.AGTAT-------------------------AGAGACTGGAGATA--AG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................G----AGAGCGGT---------------------------------G--TA----------------------------CATGT--ATGTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAAAGGGGACAGCTGA.......................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................................................................................GT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------.............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGGCGCCGCCGTCTGGCCGGG----------------------........2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................G------TGCCAATTAGTAGT------------------------------------------------------------CGACAA.....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGCAAAGGGGACAGCTGAC---------------------------------------TGC............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGCAAAGGGGACAGGG.........................................................................................................................1940.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AAATAT-------------------------ATAGGAAGGTGGTA--AGAAAGGG----AGAGCGGT---------------------------------G--TA----------------------------CGTGTGTGTGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTCATTTATCGGTGTGCAATTATTCAAGC------TGTCAATTAGCAGG------------------------------------------------------------CGACACACTTTCACTGCT----CCCCA-------TTG---CTTAATTATGAGCAAAATGGACAGCTGAC---------------------------------------TGCTTTGAT--TTGCC-AAAA--ATCTCGGGCGCCGCCGTCTGGCCGGG----------------------CCCT-AACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................ATTAGCAGG------------------------------------------------------------CGACACACTTTC...............................................................................................................................................................................2111.0011000000
......................................GGTGGTA--AGAAAGGG----AGAGCGGT---------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
droYak3
AAATAG-------------------------ATAGGGAGGTGAAA--AGAAAGGG----AGAGCGGT---------------------------------G--TA----------------------------CGTG----TGTGTGT-----------AAGTGCAGT---------------------------------------------------------GTGACGCCCTTTTGCCT---------TA-----------------A----------------------------------------------GAGGAAATAGGAA-GCT-----TTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCAGG------------------------------------------------------------CGACACACTTTCACTGCT----CCCAA-------CTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TGCTTCGAT--TTGCC-AAAA--ATCTCGGACGCCGCCGTCTGGCCGGG----------------------CCCT-AACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................GTGAAA--AGAAAGGG----AGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
.....................................AGGTGAAA--AGAAAGGG----AGAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGGACGCCGCCGTCTGGCCGGT----------------------........2411.00101000000000
droEug1
ATAAAG-------------------------AAAG--AGGTGCAAGTTGAAAGGG----AGAGCGGT---------------------------------C--TA----------------------------TGTG----TGTGTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAGAGGAA-GCCACTATTTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACTGGT----TCTCA-------TTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TAGTTTGAT--TTGCC-AAAA--ATTTCGGGCGCCGCCGTCTGGCTTGC----------------------CCCT-CC-SizeHit CountTotal NormTotal
No Reads
droBia1
ACGCATCGG------GAGAGGGG------GT---------GATAA--AGAAAGGG----AGAGCGGT---------------------------------G--TGTTTG------------------------CGTGT--GTGTGTGT------------AGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------G----------------------------------------------GAGGAAAAAGGAA-GCCACTACTTTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACTGCC----TCTCG-------TTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TGGTTTGAT--TTGCC-AAAA-AATCTCGGCCGCCGCCGTCTGGCCTGC-A--------------------CCCC-CT-SizeHit CountTotal NormTotal
No Reads
droTak1
AGAGAGGAGGAGAAAGAGAGGGG------GA---------CATAA--AGAAAGGG----AGAGCGGT---------------------------------G--TG----------------------------TGTG----TGGTTGT-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------G----------------------------------------------GAGGAAAAAGGAA-GCCACTATTTTATTTATCGGTGTGCAATAATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACCGCT----TCTCA-------CTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TTGTTTGAT--TTGCC-AAAAAAATCTCGGCCGCCGCCGTCTGGCCCAC-A----G---------------CCC-----SizeHit CountTotal NormTotal
No Reads
droEle1
AGAGAC-------------------------AGAGAGAGGCAGAA--GGAAATGA----AGAGCGGT---------------------------------G--CA----------------------------TGAA------GGTTT-----------AAGTGCGGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TC-----------------A----------------------------------------------GAGGCAAAAGGAA-GTTATAA--TTATTTATCGGTGTCCAATTATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACTGTT----TCTCA-------TTG---CTGATTTATGAGCTAAAGGGACAGGTGAC---------------------------------------TTGTTTAGT--TTGCC-AAAA--A-CTCGGGCGCCACCGTCTGGCCTTC----------------------TCTT-AA-SizeHit CountTotal NormTotal
No Reads
droRho1
GAGGAG-------------------------GG------GGAGAA--AGAAAGGG----GGAGCGGT---------------------------------G--TA----------------------------TGTA------GGTTT-----------AAGTGCGGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------C---------------------------------AATTGA-------AAGGAAAAAGGAA-GCCACTA--TTATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAACGGC------------------------------------------------------------CGACATACTTTCACTACT----TCTCA-------TTG---CTTAATTATGAGCAAAAGGGACAGGTGAC---------------------------------------TTGTTTCAT--TTGCC-AAAA--ATTTCGGGCG---CCGTCTGGCCTGC-T----CTGGC-----------CCCC-CT-SizeHit CountTotal NormTotal
No Reads
droFic1
AGAGAC-------------------------------AGGTAGAA--AGAAAGGG----AGAGCAGT---------------------------------G--TA------------------------------------TGTGTGC-----------AAGTGCAGT---------------------------------------------------------GCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------GAGGAAAAAGGAA-GCCACGAC--TATTTATCGGTGTGCAATTATTCAAGC------TGCCAATTAGCGGC------------------------------------------------------------CGACATACTTTCACTGCT----TCTTA-------TTG---CTTAATTATGAGCAAAAGGGACAGCTGAC---------------------------------------TTATTTGAT--TTGCC-AAAA--ATCTCGGGCGCCGTCGTCTGGCCGTC----------------------TCCC-CG-SizeHit CountTotal NormTotal
No Reads
droKik1
AAAAAT-------------------------GG--------------AGAAGGGC----CGAGCGGT---------------------------------G--TG----------------------------GGCG----AGTGTGC-----------AACTGCAGTAGATTT-GTT--GATT---TTTTTAAG-------------------------CGGCAGCGACGCCCTTTTGTCT---------TG-----------------T-------------------------------CTTATCGAAATCGAAGAGGAAA-------TCCA-----TGATTTATCAGTGTGCAATTATT-------------CCAATTAGCGGC------------GAAGAAGAGGAAGAAGCCTCGAC---CAAC----------------ACCGACATACTTTCACTGCT----CCAC----------T---CTTAATTATGAGTAAAAGGGACAGCTGACACAAA--GGC-------------CTGGCA-------GATTTATTTGAT--TTGCC-AAAA--ATTTCGGACGCCGCCGTCTGGCCTGC-T----A--------CCGTGC-CCCC-TT-SizeHit CountTotal NormTotal
No Reads
droAna3
AGAGAG-----------------------------------------------TC----CGAGCGGCATTAGTGCAAA-----------------------TGTGTTTGTGTGTGTGTGAGAGTGAGTGTGTCT----------GTGTATG---TGCTGAGGTGCACTGCATTTTGT---TGTT---TTTCTAAG-------------------------AG--AGAGACGCCCTTTTGTCT---------TC-----------------G------------------------------------C---------GATGCCAAAGAAA-GCG-GTAT----TTTATGGGTTTGCAATTATTCTTTG------TGCCAATTAGAAGTCCAATTAGCGCAGGAGAGGAGGAAGGTGGGGGGGC---GAAAATCT----------------CGCCACTTTCACTGTCTTGCTGCCACCACAACTTGCCACTTAATTATGAGTAAAAGGGACAGCTGACACAAA--GGC-------------CTTGCA-------GATTTATTTGAT--TTTCC-CGAA--AAGTCGGGCGCCGCCGTCTGGCCACC-T----A--------C------CACT-CC-SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------GATTTATTTGAT--TTTCC-CG............................................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTTCACTGTCTTGCTGCCA................................................................................................................................................................2111.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCT----------------CGCCACTTTCACTG...........................................................................................................................................................................2011.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTAAAAGGGACAGCTGA.......................................................................................................................2111.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAA--AAGTCGGGCGCCGCCGTC......................................2111.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGAAGGTGGGGGT......................................................................................................................................................................................................................1670.433000300
............................................................................................................GTGTGTGTGTGAGAGTGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.111000100
droBip1
AAAAACTAATAGGAAATTACAGGGACAGAGC---------GATGG--AGAGAGAC----CGAGCGGCATTAGTGCAAG-----------------------TGTGTTG----------------------------------GTGTGTATGCGCTGCTGAGGTGCACTGCATTTTGT---TGTT---TTTATAAG-----------------------------AGAGACGCCCTTTTGTCT---------TC-----------------T------------------------------------TGAAGT----CAG--CAAA-GAAAG-CGGTAT----TTTATGGGTTTGCAATTATTCTTTG------TGCCAATTAGAAGTCCAATTAGCGCCGAAGGGGAGGAGG--------GCGAGGAAAATCTCGCCACGGCATTCGT-GTGTACTTTCACTGTC----CCAAC-------TTGCCACTTAATTATGAGTAAAAGGGACAGCTGACACAAA--GGC-------------CTTGCA-------GATTTATTAGATTTTT-CCCA-AA--AAGTCGGGCGCCGTCGTCTGGCCACC----------------------TCCTATG-SizeHit CountTotal NormTotal
No Reads
dp5
AGAGAA-------------------------T----------------------TCGAC--------TGTGCGGCAAG-----------------------TGGG-----------------------------GT----GTCTGTGT-----------GAGTGCAGTGCATGGTGT---TGTGGTGTTTGTGTGTCGGACAGACGGCTTGTGGCGACGGTGGCAGCGACGCCCTTTTGTCT---------TC-----CTTCCACTCGTGACAGACACAA-------AGCGGCTCTCGGGCTCTTGC------------------A-GAA-ACCACT-----ATTTATTCGGGTGCAATTATCAAAGG-T-GTTTGCCAATTAGATGCCTAATTAG-----------A-----------------GGAAAATATCTCAATGGGATGAATGGCATACTTTCACTCGTGTGCCCCGA-------TTACGATTTAATTATGAGCAAAAGGGACAGCTGACACAAA--GAAAACCAGCAGCCAGCGAGCAGA--ATTTATTTGTTTGAT--TTGCC-AAAA--A-CTTGTGCGCCGCCGTCTGGGCTGC-T----CCGCCGCTGCGCTACGCCCT-TG-SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACTTTCACTCGTGTGCCC...................................................................................................................................................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACTTTCACTCGTGTGCCCC..................................................................................................................................................................2111.0010000001000
..................................................................................................................................................................................................................................................................................ACACAA-------AGCGGCTCTCGGGC..............................................................................................................................................................................................................................................................................................................................................2011.0010100000000
.............................................................................................................................................................................................................................................TGTCT---------TC-----CTTCCACTCGTGAC...........................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................GACGGCTTGTGGCGACGGT..............................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
..........................................................................................................................................................................................................................................................................CGTGACAGACACAA-------AGCGGC......................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-AAAA--A-CTTGTGCGCCGCCG........................................2111.0010100000000
....................................................................................................................................................................................................CGGACAGACGGCTTGTGGCGA..................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
................................................................................................................................................................................................................................................................................AGACACAA-------AGCGGCTCTCGG................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A--ATTTATTTGTTTGAT--TTGCC-..............................................................2111.0010100000000
...........................................................................................................................................................................................TTTGTGTGTCGGACAGACGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGCAAAAGGGACAGCTGAC......................................................................................................................2111.0010000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCTCAATGGGATGAATGGC.......................................................................................................................................................................................2311.0010100000000
droPer2
AGAGAA-------------------------T----------------------TCGAC--------TGTGCGGCAAG-----------------------TGGG-----------------------------GT----GTCTGTGT-----------GAGTGCAGTGCATGGTGT---TGTGGTGTTTGTGTGTCGGACAGACGGCTTGTGGCGACGGTGGCAGCGACGCCCTTTTGTCT---------TC-----CTTCCACTCGTGACAGACACAA-------AGCGGCTCTCAGGCTCTTGC------------------A-GAA-ACCACT-----ATTTATTCGGGTGCAATTATCAAAGG-T-GTTTGCCAATTAGATGCCTAATTAG-----------A-----------------GGAAAATATCTCAATGGGATGAATGGCATACTTTCACTCGTGTGCCCCGA-------TTACGATTTAATTATGAGCAAAAGGGACAGCTGACACAAA--GAAAACCAGCAGCCAGCGAGCTGA--ATTTATTTGTTTGAT--TTGCC-AAAA--A-CTTGTGCGCCGCCGTCTGGGCTGC-T----CCGCCGCTGCGCTACGCCCT-TG-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................CGGCTCTCAGGCTCTTGC------------------......................................................................................................................................................................................................................................................................................................................1811.001010000
......................................................................................................................................................................................TGGTGTTTGTGTGTCGGACA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droWil2
ATGCAC-------------------------TGAT-----CATTA--ATAGCGTG----TGTGCGGC--------AGTTTCTGTATTGTTTCTGCCCAATGTGTGTCAG------------------------TGT----GTGTTTGT-----------GAGTGCAGTGCATTTTGT---TGTT---TTC----------------------------GGTG--TGCGACGCCCTTT-GACTGCGCTGCTTTGTGCTGATTCTAC------GAGACACGAGTCTCAACTCGT-------------------------------------------------------TTCTAATGCAATTATTATTTGGTATTTTGTCAATTAAA---------------------------------------------------------------TTGCATACTTTCACTTCA-----------------------------AAACGAAAAAGGGACAGCTGAGACGAGACGCACACACACATCAAGAGAGAAGAAAATTAATTTATTTGAT--TTGCC-AAGA--A-CTTGTGCGCCGCCGTCTGGCCTGTCTACATATGTCTCTGTCCTGT-CCTT-TG-SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................GTTTCTGTATTGTTTCTGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00330000
......................................................................................TGTTTCTGCCCAATGTGTGTCT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
..........................................................................................................................................................................................................................................................TTGTGCTGATTCTAC------GAGACA......................................................................................................................................................................................................................................................................................................................................................................2111.00100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTACATATGTCTCTGTCCT...........2111.00101000
...........................................................................................................................................................................................................................................TT-GACTGCGCTGCTTTGTGCT..........................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGA--A-CTTGTGCGCCGCCGTC......................................2111.00100100
..................................................................................................ATGTGTGTCAG------------------------TGT----GTGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.25100010
...........................................................................................................AG------------------------TGT----GTGTTTGT-----------GAGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.13101000
droGri2
TTGCAT-------------------------AAAG--------TA--AAAGCAGG----TCCACGGA---------------------------------A--CGTGTG------------------------CGTATGTTTGTGTAT------------TGTGCAGGGCATTT-GTTGTTGT---------------------------GTAGCGACAACAGCAGCGACGCCCTTTTGTCT---------TG-----------------A----------------------------------------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:48 PM