dsi_9237

exon [2r_19819073_19819192_-]; CDS [2r_19819073_19819192_-]; intron [2r_19819193_19819563_-]

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGGCAGTAATTTTATTTGAAAACATTTGCGGACACTGCGGGCGATGGCGGGGGAGGGGTCAGCTGCTACCCAGCATTATTATTTCCGTGAAATATATTTTAATACAATTTTCATTTATCACCCCCGTTCACCTGCTGCATGCGCTGTCCTCGTCCTTTGCAAGTAATTCCCCCAACTCACGAACCTCCCTCCATTCGCAGGCGAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTACAAGTCCGTCCA ************************************************((((((((.((((.((....(((((...........((((...........................))))...........)))))...)))))).))((((...(((.............)))...)))).))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	M023 head
...................................................................................................................................................................................................................GGTCAAGGTGGTCCAGGC.....................	18	1	3	0.33	1	1	0
........................................................................................................................................................TCCTTTGGAAGTAAGACCC...............................................................................	19	3	12	0.08	1	0	1

ACCGTCATTAAAATAAACTTTTGTAAACGCCTGTGACGCCCGCTACCGCCCCCTCCCCAGTCGACGATGGGTCGTAATAATAAAGGCACTTTATATAAAATTATGTTAAAAGTAAATAGTGGGGGCAAGTGGACGACGTACGCGACAGGAGCAGGAAACGTTCATTAAGGGGGTTGAGTGCTTGGAGGGAGGTAAGCGTCCGCTCCTCGCTCCGGTTCCACCAGGTCCGGGTGTTCATGTTCAGGCAGGT ************************************************((((((((.((((.((....(((((...........((((...........................))))...........)))))...)))))).))((((...(((.............)))...)))).))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M024 male body	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs
....................................................................................................................................................................TTAAGTGGGGTCAGTGCTTG..................................................................	20	3	2	0.50	1	1	0	0	0	0	0	0
......................................................................................................................................................................AAGTGGGGTCAGTGCTTGG.................................................................	19	3	12	0.33	4	4	0	0	0	0	0	0
.........................................................................................................................................................................................ATGGATGTAAGCGTCCGCT..............................................	19	2	4	0.25	1	0	1	0	0	0	0	0
..................................................................................................................................................................CATAAATTGGGTTGAGTGC.....................................................................	19	3	20	0.20	4	0	0	4	0	0	0	0
..........................................................................................................................................................................GGGTTGAGTGCATGG.................................................................	15	1	5	0.20	1	0	0	0	1	0	0	0
...........................................................................................................................................................................GGTTGAGTGCATGGA................................................................	15	1	7	0.14	1	1	0	0	0	0	0	0
.........................................................................................TTTATATAAAATTATG.................................................................................................................................................	16	0	7	0.14	1	0	1	0	0	0	0	0
..........................................................................................................................................................................GGGTTGAGTGCATGGCG...............................................................	17	2	9	0.11	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................GGTCCTGGTGTTCAAGTTT........	19	3	20	0.05	1	0	0	0	0	0	1	0
.......................................................................................................................................................CTGGAAAGGTTCAGTAAGG................................................................................	19	3	20	0.05	1	1	0	0	0	0	0	0
....................................CGCCCGCTACCGCCG.......................................................................................................................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0
.....................................................................GGTCGTAACAATAAA......................................................................................................................................................................	15	1	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................ATAAAACTATGTTAA.............................................................................................................................................	15	1	20	0.05	1	0	0	0	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	2r:19819143-19819392 -	dsi_9237	TG-GC------------------AGTAATTTTATTT---GAAAACATTTGCGGACACTGCGGGCGAT--------GGC------------GGG------------------GGA---GGGGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-TATTTCCG----TGAAATATATTTTAATACAATTTTCATTTA---------------T---------------CACCCC-CG-----------------------------------------------TTCAC------CTGCTGCATGCGCTGTCC---TCG------------------------------------------------------------T--------------------CCTTTGCAAGTAATT--C--C-------------------CCCA------------------ACTCACGAAC--CTCC-------CTCCATTC--GCAG------GCGAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTAC---AAG---TCCGTCCA
droSec2	scaffold_9:2590522-2590772 -		TG-GC------------------ACTAATTTTATTT---GAAAACATTTGCGGACACTGCGGGCGAT--------GGC------------GGC------------------GGA---GGGGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-TATTTCCG----TGAAATATATTTTAATACAATTTTCATTTA---------------T---------------CACCCCCCG-----------------------------------------------TTCAC------CTGCTGCATGCGCTGTCC---TCG------------------------------------------------------------T--------------------CCTTTGCATGCAATT--C--C-------------------CCCA------------------ACTCACGAAC--CTCC-------CTCCATTC--GCAG------GCGAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTAC---AAG---TCCGTCCA
dm3	chr2R:19300607-19300860 -		TG-GC------------------AGTAATTTTATTT---GAAAACATTTGCGGACACTGCGGGCGAT--------GGT------------GGG------------------GGA---GGGGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-GATTTCCG----TGAAATATATTTTAATACAATTTTCATTTA---------------T---------------CACCCCCCG--------------------------------------------TCGTTCAC------CTGCTGCACGTCCTGTTC---TCG------------------------------------------------------------T--------------------CCTTTGCAAGTAATT--C--C-------------------CCCA------------------ACTCACGAAC--CTTC-------CTCCATTC--GCAG------GCAAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTAC---AAG---TCCGTCCA
droEre2	scaffold_4845:20666626-20666871 -		TG-GC------------------CGTAATTTTATTT---GAAAACATTTGCGGGC---GTGGGAGGG--------GGA------------GGG------------------GG----AGGGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-TATTTCCG----TGAAATATATTTTAATACAACTTTCATTTA---------------T---------------CCCCC---G--------------------------------------------TC----GC------CTGCTGCATGTCCCGCCC----CG------------------------------------------------------------T--------------------GCTTTGAACGTAACG--C--C---------------------CC------------------ACTCACGACT--GCTC-CAACTCCTCCATTC--GCAG------ACGAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTAC---AAG---TTCGTCCA
droYak3	2R:19266787-19267035 -		TG-GC------------------AGTAATTTTATTT---GAAAACATTTGCGGACACTGTGGGCGTA--------GGA------------GGTGGA---------------GGAGTAGAAGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-TATTTCCG----TGAAATATATTTTAATACAATTTTCATTTA---------------T---------------CACCCCC---------------------------------------------------------------CTGCATGTCCTGCCC---TCG------------------------------------------------------------T--------------------CCTTTGAAAGTAACTGCC--C-------------------CCCA------------------ACTCACGAAC--TCCC-------CTCCATTC--GCAG------GCGAGAAGCGATGCCAAGGTGGTTCAGGCGCACAAGTAC---AAG---GCTGTCCA
droEug1	scf7180000409474:356666-356957 +		AG-GC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGGTGAAA----GGA------------GGAGGAAGGTGGGCGGAAAAGATG-T-GGGGTCA----------GCTGGTG------------CTAC---------CG------TAGC---CTTAT-TATTTCTG----TGAAATATATTTTAATACAATTTTAATTTG---------------T---------------CTTCCCCAAAACA----------CTCTTTTT------------------------ACTCAT------C-TCTGCATGTGGTGCTTTC-TCG------------------------------------------------------------T--------------------CCTGTGAAAGTAATT--T--T-------------------CCTA------------------ACTTATGAAT--ATCT-------TACCATCC--ACAG------ACTAAGAGCGAGGCAAAGGTGGTCCAAGCCCACAAGTAC---AAG---GCTGTCCA
droBia1	scf7180000301754:3723322-3723581 -		AG-GC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGGT--------GGT------------TGG------------------GGC---TGTGCCA----------CCTGCTG------------CTAC---------CG------TGGC---ATTAT--ATTTCTG----TGAAATATATTTTAATACAATTTTAATTTA---------------T---------------CCCCCC--G--------------CCCTTTCC------------------------GTTCGT-------TTTTGCATGCGCTGCCC---TCG------------------------------------------------------------C--------------------CCTTTGAAAGTAATT--T--G-------------------CGTA------------------ACTTATGAAT--ATCC-------CTCCGTCC--GCAG------GTGAAGAGCGAGGCCAAGGCGGTGACCGCCCACAAGTAC---AAG---ACCGTCCA
droTak1	scf7180000414439:3817-3983 -		AG-GC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTAGGCGGT--------GGTT-----------GGA------------------GGC---GGGGCCA----------CCTGCTG------------CTAC---------CG------AGGCAATATTAT-TATTTCTG----TGAAACATATTTTAATACAATTTTAATTTG---------------C---------------AAACCCCCG--------------------------------------------CC--TCA---------CCAGCATGTGATGCCCTC-TCG------------------------------------------------------------T--------------------CCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1	scf7180000491201:1522577-1522842 +		AG-CC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGAA--------GGA------------GGAGGAGGAGGAGGAGGAGGGGTG---TGGGTCA----------GCTGGCG------------CTAC-------------------------------ATTTCCG----TGAAATATATTTTAATATAATTTTAATTTA---------------T---------------CCCCCC-AG-------------------------------------------------------TACTGCTTGCATGTGATGCTC---TGG------------------------------------------------------------T--------------------TCTTTACAAATAGTT--T--T-------------------CGTA------------------ACTTATGAAT--ATCC-------CACCATCCCCACAGGTGCCGGAGAAGAGCGAGGCCAAGGTCGTCCAGGCCCACAAGTAC---AAG---TCTGTCCA
droRho1	scf7180000780066:572064-572332 -		AG-GC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCAAA--------GGA------------GGA------------------GGTTTGGGGGTCA----------GCTGGTG------------CTAC---------CG------CGGC---ATTAT-TATTTCTG----TGAAATATATTTTAATACAATTTTAATTTA---------------T---------------CCCCCC--T--------------CC--------------------------------CCATCAGTTCTGCTTGCATGTGATGCTC---TCG------------------------------------------------------------T--------------------TCTTTACAAGTAATT--T--T-------------------CGTA------------------ACTTATAAAT--ATCC-------CGCCATCC--ACAGGTGCCGGTGAAGAGCGAGGCCAAGGCCGTTCAGGCCCACAAGTAC---AAT---TCCGTCCA
droFic1	scf7180000453809:931865-932140 +		AG-GC------------------CGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGGA--------TGC------------GAAAAAAAAGAAGGAGGAGAAGGG---ACAGTCA----------GCTGCTG------------CTAC---------CG------TAGC---ATTAT-TATTTCTG----TGAAATA-ATTTTAATACAATTTTAATTTA---------------T---------------CCCCCC--G--------------------------------------------CT--TC--------CCCTTGCATGTGATGCCTTC-TC-------------------------------------------------------------C--------------------CCCCGAAAAGTAATT--T--C-------------------GGTA------------------ACTTATGAAT--ATCC-------CACCATCC--ACAGGTGCCGCTGAAGAGTAATGCCAAGGTGGTCCACGCCCACAAGGTG---AAG---ACCGTCCA
droKik1	scf7180000302398:282264-282616 -		AG-GCGAAATAACATTTT-GGGCTGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGACAGA--------GGG------------GTT------------------GGT---TGGGTCA----------GCTGCCGTTGGTTTGGCTGCTACTATTGCGTTC-------TGGC---TTTAT-TATTTCAG----TGAAATTTATTTTAATACAATTTTAATTTC---------------CTCAACCTGAA--------CC---------CCGAAACCCAA------ACCCAACTTGAAAATTTCTT--CC----TT------TTTGTGCATGTGGTGTTCGC-T-G------------------------------------------------------------G--------------------CCTTTGAAAGCAATT--T--TC-TTGTTAAAAAT-TTAGCCCTA------------------ACTTATGAATATATAT-------CTTTATGCACACAGGTGCCAGTGAAGAGCGCGGCCAAGGTGGTACAGACCCATAAGTAC---AAG---TCTGTGCA
droAna3	scaffold_13266:7932747-7933038 -		GG-GC------------------TGTAATTTTGTTTTCGAAAAACATTTGCGAACGGTGTGGGCGGG--------G------------------------------------CT---TGGGTCA----------GCTGCTC------------C---------------------------TTTAT-TATTTCTG----TGAATTATATTTTAATACAATTTAAATATT---------------A---------------CTTCCCCCGGACGAGCGA---TTCC------CT------------------CG--------AAGTTTTTCGTGCATGTGATGCTC---ACC---------------------------------------C-TTATT--------------T--------------------CCTTTAAAAGTTATT--T--TCATTGTTA-TTAT-TTATCCGGA------------------ACTGA-AAAT--ATCTCAT----TACCATTC--GTAGGCGCCAGTGAAGAGCGAGGCGAAGGCGGTCCAGACCACCAAATAC---AAG---GCGGTCCA
droBip1	scf7180000396759:890228-890520 +		AG-GC------------------TGTAATTTTGTTTTT-GAAAACATTTGCGGACAATGTGGGCGGG--------G------------------------------------CT---TGGGTCA----------GCTGCTC------------C---------------------------TTTAT-TATTTCCG----TGAATTATATTTTAATACAATTTAAATATT---------------A---------------CTTCCCCCGGTCGGGCGA---TTCCC-----CT------------------CG--------AAGTTTTTCGTGCATGTGATGCTC---TCC---------------------------------------T-TTATT--------------T-------------------GGCTTGAAAAGTTATT--T--TCATTGTTA-TTAT-TTATCCGGA------------------ACCTA-AAAT--ATCTCAT----TACCATTC--GCAGGCGCCAGTGAAGAGCGAGGCCAAGGCGGTGCAGACCCACAAATAC---AAG---GCTGCCCA
dp5	3:9098029-9098384 +		GG-GCGGAATTACATTTTCCTGCTGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGTG--------GT----------------------------------------CAGGTCAGGCTGCCGGACATGCGG------------CCAT---------CGACTTGTTGAA---ATTACATATTTCCAAATCCAAAACATATTCATATATACTCGTACCTAGTATTTTTGC-CTTGCCTTAACT-----------------------------------------------------------T--TC----GT------TTGATGCATGTGACTTTTTGTTTGCTTTTTGGTGGCAGCAGTGGCG-GCAGTGGCTTCCGGCAT-T--------------------------------------------------------CAGTT-CCTTTATTGCC-TCACA-CTAACCTGAATATCCTCT-------------------CCG----CCCCTCCC--ACAGTCACCAGTGAAGACCGATGTGAAGACCGTGCAGACCCACAAGTACTCGAAG---ACCGTCCA
droPer2	scaffold_4:4419854-4420211 +		GG-GCGGAATTACATTTTCCTGCTGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGTG--------GT----------------------------------------CAGGTCAGGCTGCCGGACATGCGG------------CCAT---------CGACTTGTTGAA---ATTACATATTTCCAAATCCAAAACATATTCATATATACTCGTACCTAGTATTTTTGC-CTTGCCTTAACT-----------------------------------------------------------T--TA----GT------TTGATGCATGTGACTTTTTGTTTGCTTTTTGGTGGCAGCAGTGGCGGGCAGTGGATTCCGGCATTT--------------------------------------------------------CAGTT-CCTTTATTGCCTTTACA-CTAACCTGAATATCCTCT-------------------CC-----GCCCTCCC--ACAGTCACCAGTGAAGACCGATGTGAAGACCGTGCAGACCCACAAGTACTCGAAG---ACCGTCCA
droWil2	scf2_1100000004954:2628186-2628382 -		TTTAG------------------TTTAATTTTATTT---TTGCTCGTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGGTGGCAGTTGA------AC------------------TG--------AAGTG-------------------------------------------------------TTTTTGGCAT-TTATTTAATTTTTGGGTTGT--------------------TGGTTGAATGCAACT--T--C----------------GTA-GTAAAC---------------A-TCATAATC--ATCTCT-----TCCCAATG--CCAGGTGCCGTTGAAAAGTGAAGCCAAAGTGGTCCATACCCATAGGTACACCAAA---ACGGTTGA
droVir3	scaffold_12875:18575568-18575638 -		CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--ACAGGCGACGCCCAAGAGTGAGGCCAAGGTGGTGCAAACGCGCAAGTACGCAAAGGTCGCCAGCCA
droMoj3	scaffold_6496:12230521-12230883 -		GG-GTCAAAATATTTG-----------------------ACCAACGTTTGCTGTAAAATTATTTAAA----TTGTGGTTTATTTTGGGCCGGC------------------GC----ATTGCCA----------AC----------------------------------TTGTTGGA---AA--CATTTTCAATAATTTTTGTTGTAT-TATTTCTCTTCTTATTTTGTATATTTTTGTTTGCATGAATTTTCATTACGTTCT--------CGGTGGCAGCTAA------ATATAACTTTT-------------------------------------------------------------------------------------GCAT-TTGTTAAGCTTTCGGTTGGCGCATTGTTTGCGTTTGTTCGTTTTTGTCTGCCATT--TGTTA-TTGTTAAATTT-CTGCA-GCCATTTGATCGTTTTCTCTCGCCCACAAAC--A---------------GAC--GCAGTCGTCGCCCAAAAGTGAAGCCAAGGCGGTCCACAAATCCGC------AAAGGGCCCTCGCCA
droGri2	scaffold_15245:4678630-4678682 -		------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGTGATGCAAAGGTGGTGCACCAGCACAAGTATTCCCAGGTTGCCGCACA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TG-GC------------------AGTAATTTTATTT---GAAAACATTTGCGGACACTGCGGGCGAT--------GGC------------GGG------------------GGA---GGGGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-TATTTCCG----TGAAATATATTTTAATACAATTTTCATTTA---------------T---------------CACCCC-CG-----------------------------------------------TTCAC------CTGCTGCATGCGCTGTCC---TCG------------------------------------------------------------T--------------------CCTTTGCAAGTAATT--C--C-------------------CCCA------------------ACTCACGAAC--CTCC-------CTCCATTC--GCAG------GCGAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTAC---AAG---TCCGTCCA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

TG-GC------------------ACTAATTTTATTT---GAAAACATTTGCGGACACTGCGGGCGAT--------GGC------------GGC------------------GGA---GGGGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-TATTTCCG----TGAAATATATTTTAATACAATTTTCATTTA---------------T---------------CACCCCCCG-----------------------------------------------TTCAC------CTGCTGCATGCGCTGTCC---TCG------------------------------------------------------------T--------------------CCTTTGCATGCAATT--C--C-------------------CCCA------------------ACTCACGAAC--CTCC-------CTCCATTC--GCAG------GCGAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTAC---AAG---TCCGTCCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TG-GC------------------AGTAATTTTATTT---GAAAACATTTGCGGACACTGCGGGCGAT--------GGT------------GGG------------------GGA---GGGGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-GATTTCCG----TGAAATATATTTTAATACAATTTTCATTTA---------------T---------------CACCCCCCG--------------------------------------------TCGTTCAC------CTGCTGCACGTCCTGTTC---TCG------------------------------------------------------------T--------------------CCTTTGCAAGTAATT--C--C-------------------CCCA------------------ACTCACGAAC--CTTC-------CTCCATTC--GCAG------GCAAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTAC---AAG---TCCGTCCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGCGAGGCCAAGGT....................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCCAAGGTGGTCCAG.............................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAGGAGCGAGGCCAAGGTGGT.................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................CGGGCGAT--------GGT------------GGG------------------GGA---GGGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGCGAGGCCAAGGTGGT.................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCCAAGGTGGTCCAGG............................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGTCCAGGCCCACA......................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCGAGGCCAAGGTGGTCCA..............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC--CTTC-------CTCCATTC--GCAG------........................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................TGC---------------TAC---------C-------CAGC---ATTAT-GATTTCCG----TGA.......................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................TGC---------------TAC---------C-------CAGC---ATTAT-GATTTCCG----..........................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGGTGGTCCAGGC...........................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGAGCGAGGCCAAGGTGGTCCAGGCCCAC.......................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGAGCGAGGCCAAGGTGGTCCA..............................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................GCGGGCGAT--------GGT------------GGG------------------GGG---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TG-GC------------------CGTAATTTTATTT---GAAAACATTTGCGGGC---GTGGGAGGG--------GGA------------GGG------------------GG----AGGGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-TATTTCCG----TGAAATATATTTTAATACAACTTTCATTTA---------------T---------------CCCCC---G--------------------------------------------TC----GC------CTGCTGCATGTCCCGCCC----CG------------------------------------------------------------T--------------------GCTTTGAACGTAACG--C--C---------------------CC------------------ACTCACGACT--GCTC-CAACTCCTCCATTC--GCAG------ACGAGGAGCGAGGCCAAGGTGGTCCAGGCCCACAAGTAC---AAG---TTCGTCCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGAGGCCAAGGTGGTCCAG.............................	20	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGCCCACAAGTAC---AAG---TTCGTC..	26	1	1.00	1	0	0	0	0	0	1	0
..............................................................GAGGG--------GGA------------GGG------------------GG----AGGGTCA----------GAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAGGAGCGAGGCCAAGGTGGTCC...............................	25	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAGCGAGGCCAAGGTGGTCCA..............................	24	1	1.00	1	0	0	1	0	0	0	0

droYak3

TG-GC------------------AGTAATTTTATTT---GAAAACATTTGCGGACACTGTGGGCGTA--------GGA------------GGTGGA---------------GGAGTAGAAGTCA----------GCTGC---------------TAC---------C-------CAGC---ATTAT-TATTTCCG----TGAAATATATTTTAATACAATTTTCATTTA---------------T---------------CACCCCC---------------------------------------------------------------CTGCATGTCCTGCCC---TCG------------------------------------------------------------T--------------------CCTTTGAAAGTAACTGCC--C-------------------CCCA------------------ACTCACGAAC--TCCC-------CTCCATTC--GCAG------GCGAGAAGCGATGCCAAGGTGGTTCAGGCGCACAAGTAC---AAG---GCTGTCCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCGATGCCAAGGTGGTTCAGGCGCA........................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCACAAGTAC---AAG---GCTGTCC.	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCGCACAAGTAC---AAG---GCTGG...	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0

droEug1

AG-GC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGGTGAAA----GGA------------GGAGGAAGGTGGGCGGAAAAGATG-T-GGGGTCA----------GCTGGTG------------CTAC---------CG------TAGC---CTTAT-TATTTCTG----TGAAATATATTTTAATACAATTTTAATTTG---------------T---------------CTTCCCCAAAACA----------CTCTTTTT------------------------ACTCAT------C-TCTGCATGTGGTGCTTTC-TCG------------------------------------------------------------T--------------------CCTGTGAAAGTAATT--T--T-------------------CCTA------------------ACTTATGAAT--ATCT-------TACCATCC--ACAG------ACTAAGAGCGAGGCAAAGGTGGTCCAAGCCCACAAGTAC---AAG---GCTGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AG-GC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGGT--------GGT------------TGG------------------GGC---TGTGCCA----------CCTGCTG------------CTAC---------CG------TGGC---ATTAT--ATTTCTG----TGAAATATATTTTAATACAATTTTAATTTA---------------T---------------CCCCCC--G--------------CCCTTTCC------------------------GTTCGT-------TTTTGCATGCGCTGCCC---TCG------------------------------------------------------------C--------------------CCTTTGAAAGTAATT--T--G-------------------CGTA------------------ACTTATGAAT--ATCC-------CTCCGTCC--GCAG------GTGAAGAGCGAGGCCAAGGCGGTGACCGCCCACAAGTAC---AAG---ACCGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AG-GC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTAGGCGGT--------GGTT-----------GGA------------------GGC---GGGGCCA----------CCTGCTG------------CTAC---------CG------AGGCAATATTAT-TATTTCTG----TGAAACATATTTTAATACAATTTTAATTTG---------------C---------------AAACCCCCG--------------------------------------------CC--TCA---------CCAGCATGTGATGCCCTC-TCG------------------------------------------------------------T--------------------CCTTT------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AG-CC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGAA--------GGA------------GGAGGAGGAGGAGGAGGAGGGGTG---TGGGTCA----------GCTGGCG------------CTAC-------------------------------ATTTCCG----TGAAATATATTTTAATATAATTTTAATTTA---------------T---------------CCCCCC-AG-------------------------------------------------------TACTGCTTGCATGTGATGCTC---TGG------------------------------------------------------------T--------------------TCTTTACAAATAGTT--T--T-------------------CGTA------------------ACTTATGAAT--ATCC-------CACCATCCCCACAGGTGCCGGAGAAGAGCGAGGCCAAGGTCGTCCAGGCCCACAAGTAC---AAG---TCTGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AG-GC------------------TGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCAAA--------GGA------------GGA------------------GGTTTGGGGGTCA----------GCTGGTG------------CTAC---------CG------CGGC---ATTAT-TATTTCTG----TGAAATATATTTTAATACAATTTTAATTTA---------------T---------------CCCCCC--T--------------CC--------------------------------CCATCAGTTCTGCTTGCATGTGATGCTC---TCG------------------------------------------------------------T--------------------TCTTTACAAGTAATT--T--T-------------------CGTA------------------ACTTATAAAT--ATCC-------CGCCATCC--ACAGGTGCCGGTGAAGAGCGAGGCCAAGGCCGTTCAGGCCCACAAGTAC---AAT---TCCGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AG-GC------------------CGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGGA--------TGC------------GAAAAAAAAGAAGGAGGAGAAGGG---ACAGTCA----------GCTGCTG------------CTAC---------CG------TAGC---ATTAT-TATTTCTG----TGAAATA-ATTTTAATACAATTTTAATTTA---------------T---------------CCCCCC--G--------------------------------------------CT--TC--------CCCTTGCATGTGATGCCTTC-TC-------------------------------------------------------------C--------------------CCCCGAAAAGTAATT--T--C-------------------GGTA------------------ACTTATGAAT--ATCC-------CACCATCC--ACAGGTGCCGCTGAAGAGTAATGCCAAGGTGGTCCACGCCCACAAGGTG---AAG---ACCGTCCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AG-GCGAAATAACATTTT-GGGCTGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGACAGA--------GGG------------GTT------------------GGT---TGGGTCA----------GCTGCCGTTGGTTTGGCTGCTACTATTGCGTTC-------TGGC---TTTAT-TATTTCAG----TGAAATTTATTTTAATACAATTTTAATTTC---------------CTCAACCTGAA--------CC---------CCGAAACCCAA------ACCCAACTTGAAAATTTCTT--CC----TT------TTTGTGCATGTGGTGTTCGC-T-G------------------------------------------------------------G--------------------CCTTTGAAAGCAATT--T--TC-TTGTTAAAAAT-TTAGCCCTA------------------ACTTATGAATATATAT-------CTTTATGCACACAGGTGCCAGTGAAGAGCGCGGCCAAGGTGGTACAGACCCATAAGTAC---AAG---TCTGTGCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

GG-GC------------------TGTAATTTTGTTTTCGAAAAACATTTGCGAACGGTGTGGGCGGG--------G------------------------------------CT---TGGGTCA----------GCTGCTC------------C---------------------------TTTAT-TATTTCTG----TGAATTATATTTTAATACAATTTAAATATT---------------A---------------CTTCCCCCGGACGAGCGA---TTCC------CT------------------CG--------AAGTTTTTCGTGCATGTGATGCTC---ACC---------------------------------------C-TTATT--------------T--------------------CCTTTAAAAGTTATT--T--TCATTGTTA-TTAT-TTATCCGGA------------------ACTGA-AAAT--ATCTCAT----TACCATTC--GTAGGCGCCAGTGAAGAGCGAGGCGAAGGCGGTCCAGACCACCAAATAC---AAG---GCGGTCCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGAAGAGCGAGGCGAAGGC....................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAGCGAGGCGAAGGC....................................	18	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGAAGGCGGTCCAGACCACCA......................	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGCGAGGCGAAGGCGGTCCAGA............................	25	1	1.00	1	1	0	0	0	0	0

droBip1

AG-GC------------------TGTAATTTTGTTTTT-GAAAACATTTGCGGACAATGTGGGCGGG--------G------------------------------------CT---TGGGTCA----------GCTGCTC------------C---------------------------TTTAT-TATTTCCG----TGAATTATATTTTAATACAATTTAAATATT---------------A---------------CTTCCCCCGGTCGGGCGA---TTCCC-----CT------------------CG--------AAGTTTTTCGTGCATGTGATGCTC---TCC---------------------------------------T-TTATT--------------T-------------------GGCTTGAAAAGTTATT--T--TCATTGTTA-TTAT-TTATCCGGA------------------ACCTA-AAAT--ATCTCAT----TACCATTC--GCAGGCGCCAGTGAAGAGCGAGGCCAAGGCGGTGCAGACCCACAAATAC---AAG---GCTGCCCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

GG-GCGGAATTACATTTTCCTGCTGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGTG--------GT----------------------------------------CAGGTCAGGCTGCCGGACATGCGG------------CCAT---------CGACTTGTTGAA---ATTACATATTTCCAAATCCAAAACATATTCATATATACTCGTACCTAGTATTTTTGC-CTTGCCTTAACT-----------------------------------------------------------T--TC----GT------TTGATGCATGTGACTTTTTGTTTGCTTTTTGGTGGCAGCAGTGGCG-GCAGTGGCTTCCGGCAT-T--------------------------------------------------------CAGTT-CCTTTATTGCC-TCACA-CTAACCTGAATATCCTCT-------------------CCG----CCCCTCCC--ACAGTCACCAGTGAAGACCGATGTGAAGACCGTGCAGACCCACAAGTACTCGAAG---ACCGTCCA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................TTTGCGGACAATGTGGGCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCAGTGAAGACCGATGTGAA.......................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGAAGACCGTGCAGACCC.........................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGATGTGAAGACCGTGCAG.............................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GG-GCGGAATTACATTTTCCTGCTGTAATTTTATTT---GAAAACATTTGCGGACAATGTGGGCGTG--------GT----------------------------------------CAGGTCAGGCTGCCGGACATGCGG------------CCAT---------CGACTTGTTGAA---ATTACATATTTCCAAATCCAAAACATATTCATATATACTCGTACCTAGTATTTTTGC-CTTGCCTTAACT-----------------------------------------------------------T--TA----GT------TTGATGCATGTGACTTTTTGTTTGCTTTTTGGTGGCAGCAGTGGCGGGCAGTGGATTCCGGCATTT--------------------------------------------------------CAGTT-CCTTTATTGCCTTTACA-CTAACCTGAATATCCTCT-------------------CC-----GCCCTCCC--ACAGTCACCAGTGAAGACCGATGTGAAGACCGTGCAGACCCACAAGTACTCGAAG---ACCGTCCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................CCGGACATGCGG------------CCAT---------CGACTTGTTG.................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCGTGCAGACCCACAAGTA..................	21	1	1.00	1	0	1	0	0	0	0

droWil2

TTTAG------------------TTTAATTTTATTT---TTGCTCGTTTC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATTGGGTGGCAGTTGA------AC------------------TG--------AAGTG-------------------------------------------------------TTTTTGGCAT-TTATTTAATTTTTGGGTTGT--------------------TGGTTGAATGCAACT--T--C----------------GTA-GTAAAC---------------A-TCATAATC--ATCTCT-----TCCCAATG--CCAGGTGCCGTTGAAAAGTGAAGCCAAAGTGGTCCATACCCATAGGTACACCAAA---ACGGTTGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAAAAGTGAAGCCAAAGTGG..................................	23	1	1.00	1	0	0	0	0	1
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCGTTGAAAAGTGAAGCCA........................................	20	1	1.00	1	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAAGTGAAGCCAAAGT....................................	18	1	1.00	1	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAGGTACACCAAA---ACG.....	18	1	1.00	1	0	1	0	0	0

droVir3

CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC--ACAGGCGACGCCCAAGAGTGAGGCCAAGGTGGTGCAAACGCGCAAGTACGCAAAGGTCGCCAGCCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTGAGGCCAAGGTG...................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGCGCAAGTACGCAAAGGTCGC......	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAGGCCAAGGTGGTGCA..............................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGAGGCCAAGGTGGTGCAAACG..........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droMoj3

GG-GTCAAAATATTTG-----------------------ACCAACGTTTGCTGTAAAATTATTTAAA----TTGTGGTTTATTTTGGGCCGGC------------------GC----ATTGCCA----------AC----------------------------------TTGTTGGA---AA--CATTTTCAATAATTTTTGTTGTAT-TATTTCTCTTCTTATTTTGTATATTTTTGTTTGCATGAATTTTCATTACGTTCT--------CGGTGGCAGCTAA------ATATAACTTTT-------------------------------------------------------------------------------------GCAT-TTGTTAAGCTTTCGGTTGGCGCATTGTTTGCGTTTGTTCGTTTTTGTCTGCCATT--TGTTA-TTGTTAAATTT-CTGCA-GCCATTTGATCGTTTTCTCTCGCCCACAAAC--A---------------GAC--GCAGTCGTCGCCCAAAAGTGAAGCCAAGGCGGTCCACAAATCCGC------AAAGGGCCCTCGCCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C--GCAGTCGTCGCCCAAAAGTGAAGCCAA.......................................	28	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCACAAAC--A---------------GAC--GCAGTCG...........................................................	21	1	1.00	1	0	0	0	1	0	0

droGri2

------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGTGATGCAAAGGTGGTGCACCAGCACAAGTATTCCCAGGTTGCCGCACA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGGTGCACCAGCACA......................	19	1	3.00	3	3	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTGATGCAAAGGTGGTGCACCA...........................	26	1	2.00	2	2	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTATTCCCAGGTTGCCG....	19	1	2.00	2	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATTCCCAGGTTGCCGCACA	22	1	2.00	2	0	2
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATTCCCAGGTTGCCGCA..	20	1	2.00	2	2	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAGTGATGCAAAGGTGGT.................................	20	1	2.00	2	2	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGATGCAAAGGTGGTGCA..............................	22	1	2.00	2	1	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGTGCACCAGCACAAGTATTC...............	25	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGATGCAAAGGTGGTGCACC............................	24	1	1.00	1	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGGTGCACCAGCACAAGTATT................	25	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGTGCACCAGCACAAGTATTCC..............	26	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTGGTGCACCAGCACAAG....................	22	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAAGTATTCCCAGGTTGCCG....	22	1	1.00	1	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAAAGGTGGTGCACCAGCA........................	20	1	1.00	1	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCAAAGGTGGTGC...............................	18	1	1.00	1	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATTCCCAGGTTGCCGCA..	19	1	1.00	1	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATGCAAAGGTGGTGCA..............................	19	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGATGCAAAGGTGGT.................................	19	1	1.00	1	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACAAGTATTCCCAGGTTG.......	20	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGGTGCACCAGCACAAGTATTC...............	26	1	1.00	1	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGATGCAAAGGTGGTGCAC.............................	23	1	1.00	1	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGTGATGCAAAGGTGGTGCACCA...........................	25	1	1.00	1	0	1
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTGGTGCACCAGCACA......................	20	1	1.00	1	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATTCCCAGGTTGCCG....	18	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGGTGGTGCACCAGCA........................	19	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGTGGTGCACCAGCACA......................	18	1	1.00	1	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTATTCCCAGGTTGCCGC...	19	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGTGGTGCACCAGCACAAGTATTCC..............	27	1	1.00	1	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCAAAGGTGGTGCACCAG..........................	22	1	1.00	1	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGGTGGTGCACCAGCA........................	18	1	1.00	1	1	0

dsi_9237

2r:19819193-19819342 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads