ID:

dsi_9231

 Coordinate:

3r:416101-416250 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.6 -7.6

Flybase annnotation

CDS [3r_416088_416100_+]; five_prime_UTR [3r_416066_416087_+]; exon [3r_416066_416100_+]; intron [3r_416101_417640_+]; five_prime_UTR [3r_416066_416487_+]; exon [3r_416066_416515_+]

No Repeatable elements found

Sense Strand Reads

---------------###########################################################################################################################################################################################################################################
ACAGAAGTAGGGTTGTCGCCGGCCATCAACAATCCAAATGAACTCCTACGGTTTGTAGACAATATTAAAAACTGAATTTAACTGCCTTCCCACAAGAAATCACCAACACAAAGGGAGCGACAACCCACCGCCTGCGCCCAGAAACCTGGTCGACTGTTTTCCCCAGTTTTCTTTTGACCCGCAACCTGCGTTTGCTCTGTGCAGCCATACATTTTATTTCATTAGCAAAGCGCATATTTTTATAATTTTA
**************************************************************************************************************************.................(((((.((((..((......)).)))).)))))......************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR902009
testis
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 SRR902008
ovaries
 M053
female body
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
..............................................TACGGTTTGTAGACAATATTAAAAAC.................................................................................................................................................................................. 26 0 1 5.00 5 3 0 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................TTTCCCCAGTTTTCTTTTGAC........................................................................ 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0 0
................................TCCAAATGAACTCCTACGGTTTG................................................................................................................................................................................................... 23 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................ACCCACCGCCTGCGCCCAGAAACCTGG..................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..AGAAGTAGGGTTGTCGCCGGCC.................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................AAGAAATCACCAACACAAA.......................................................................................................................................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TCTTTTGACCCACAACCTGCG............................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TGCTCTGTGCAGCCATACATTTTATT................................ 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
..............................................TACGGTTTGTAGACAATATTAAAAA................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................................TCCAAATGAACTCCTACGGTT..................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TTTCCCCAGTTTTCTTTTGA......................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TTATTTCATTAGCAAAGCGCA................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................AGACAATATTAAAAACTG................................................................................................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................TTGTAGACAATATTAAAAACTGAAT............................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................TTTGTAGACAATATTAAAAACT................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................CAACAATCCAAATGAACTC............................................................................................................................................................................................................. 19 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................CAAATGAACTCCTACGGTTTGT.................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................................................................................................ATTAGCAAAGCGCATATTTTT......... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................CCCGGAAACCTGGTCGACTGT............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................ACATTTTATTTCATTAGCA....................... 19 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......GTAGGGTGGTCTCCGGCCGT................................................................................................................................................................................................................................ 20 3 2 0.50 1 0 0 0 0 0 0 0 0 0 1 0 0
........................................................................................................................................CCCAGAAACCCGGTCGT................................................................................................. 17 2 7 0.29 2 0 0 0 0 2 0 0 0 0 0 0 0
.....AGTAGGGTTGTCGCCGGTTT................................................................................................................................................................................................................................. 20 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................CACTAAGGGAGCGAGAAC.............................................................................................................................. 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 0 1 0
..............................................................................TAGCTGCATTCCCAAAAGAAA....................................................................................................................................................... 21 3 8 0.13 1 0 0 0 0 0 0 0 0 0 0 0 1
........................ATCAACTATCCAATTGGACT.............................................................................................................................................................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 1 0 0 0 0 0
.....................................ATGAAGTCCTTCGGGTTGTA................................................................................................................................................................................................. 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................CTTTAGACCCGAAACCTGA............................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0
......................................CGAGCTCCTTCGGTTTGTA................................................................................................................................................................................................. 19 3 17 0.06 1 0 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

TGTCTTCATCCCAACAGCGGCCGGTAGTTGTTAGGTTTACTTGAGGATGCCAAACATCTGTTATAATTTTTGACTTAAATTGACGGAAGGGTGTTCTTTAGTGGTTGTGTTTCCCTCGCTGTTGGGTGGCGGACGCGGGTCTTTGGACCAGCTGACAAAAGGGGTCAAAAGAAAACTGGGCGTTGGACGCAAACGAGACACGTCGGTATGTAAAATAAAGTAATCGTTTCGCGTATAAAAATATTAAAAT
************************************************************************.................(((((.((((..((......)).)))).)))))......************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
.....................CGGTAGTTGTTAGGTTTACT................................................................................................................................................................................................................. 20 0 1 6.00 6 6 0 0 0 0 0
.....................CGGTAGTTGTTAGGTTTACTT................................................................................................................................................................................................................ 21 0 1 4.00 4 4 0 0 0 0 0
....................CCGGTAGTTGTTAGGTTTACT................................................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0
..................GGCCGGTAGTTGTTAGGTTTA................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0
................GCGGCCGGTAGTTGTTAGGT...................................................................................................................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0
................................................................................................................................................................GGGGTCAAAAGAAAACTGGGT..................................................................... 21 1 1 1.00 1 1 0 0 0 0 0
...............AGCGGCCGGTAGTTGTTAGGT...................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
................GCGGCCGGTGGTTGTTAGGT...................................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
.............................GTTAGGTTTGCTTGAGGATG......................................................................................................................................................................................................... 20 1 1 1.00 1 1 0 0 0 0 0
......................GGTAGTTGTTAGGTTTACT................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
..................GGCCGGTAGTTGTTAGGTTT.................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
.....................CGGTAGTTGTTAGGTTTACTTG............................................................................................................................................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
......................GGTAGTTGTTAGGTTTACTTG............................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
.....................CGGTAGTTGTTAGGTTTGCT................................................................................................................................................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................CAAACATCTGTTATAATTTTT................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0
........................TAGTAGTTAGGTTTACTAGAGT............................................................................................................................................................................................................ 22 3 1 1.00 1 0 1 0 0 0 0
........................................................................ACTTAAATTGACGGAAGGGTGTTC.......................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0
........................TAGTTGTTAGTTTTACTTGAGT............................................................................................................................................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0
........................TAGTGGGTAGGTTTACTAGAGG............................................................................................................................................................................................................ 22 3 1 1.00 1 0 1 0 0 0 0
........................TAGTCGATAGTTTTACTTGAGG............................................................................................................................................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0
...........................................AGGATGACGAACATCCGTTAT.......................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 0 1 0
...................TTTGGTAGTTGTTAGGTTTACT................................................................................................................................................................................................................. 22 3 5 0.20 1 1 0 0 0 0 0
...........................................AGGATGACGAACATCCGTTA........................................................................................................................................................................................... 20 3 10 0.20 2 0 0 0 0 2 0
............................................................................AAAATGACTGAAGGGTGT............................................................................................................................................................ 18 2 11 0.18 2 0 0 2 0 0 0
...............................................................................................................................................TGGACTAGCTGACAA............................................................................................ 15 1 6 0.17 1 0 0 0 0 1 0
.........................................CGAGGTTGCCAAACATC................................................................................................................................................................................................ 17 2 10 0.10 1 0 0 0 0 0 1
..........................................GAGGCTGCCAAACATCG............................................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 1
...........................................AGGATGACAAACATC................................................................................................................................................................................................ 15 1 16 0.06 1 0 0 0 0 1 0
................TTTGCCGGTAGTTGTTAGGT...................................................................................................................................................................................................................... 20 3 17 0.06 1 1 0 0 0 0 0
..........................................................................................................................TGGGTGCCGGAAGCGG................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0
.........................................TGAGGATGCCCAAAAT................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:416051-416300 + dsi_9231 ACAGAAGTAGGGTTGTCGCCGGCCATCAACAATCCAAATGAACTCCTACGGTTTGTAGACAATA--TTAAAAACTGAAT------------------TTAA----C-----TGCCTT----CCCACAA----GAA-A------TCACCAACACA--AAGGGAGCGACAACC-CACCGCCTGCGCCCAGAAACCTGGTCGACTG---TTTTC-------------CCCA-----GTTTTCTTTTGA------C-CCGCAACCTGCGTT----TGCTCT-G--TG-----------------------------CA---------------------------------------------------------------G------CCATACATTTTATT---TC---ATTA-GCAAAGCGCAT--ATTTT---------TATAA--TTTTA
droSec2 scaffold_6:581743-581992 + ACAGATGTAGGGTTGTCGCCGGCCATCAACAATCCAAATGAACTCCTACGGTTTGTAGACAATA--TTAAAAACTGAAT------------------TTAA----C-----TGCCTT----CCCACAA----GAA-C------TCACCAACACA--AAGGGAGCGACAACC-CACCGCCTGCGCCCAGAAACCTGGTCGACTG---TTTTC-------------CCCA-----GTTTTCTTTTGA------C-CCACAACCTGCGTT----TGCTTT-G--TG-----------------------------CA---------------------------------------------------------------G------CCATACATTTTATT---TC---ATTA-GCAAAGCGAAT--ATTTT---------TATAA--TTTTA
dm3 chr3R:467681-467943 + ACAGAAGTAGGGTTGTCGCCGGCCATCAACAATCCAAATGAACTCCTACGGTTTGTAGACAATA--TTAAAAACTGAAT------------------TTAA----C-----TGCCTT----CCCACAA----GAA-A------TCACCAACACA--AAGGGAGCGACAACC-CACCGCCTGCGCCCAGAAACCTGGTCGACTG---TTTTC-------------CCGA-----GTTTTCTTTTGG------C-CCACAACCTGCGTT----TGCTCT-G--TG-----------------------------CAG----------------TC-AC-TGCC------------------------------------GCG----CCATACATTTTATT---TC---ATTA-GCGAAGCCCATATATATT---------TATAA--TTTTA
droEre2 scaffold_4770:774329-774587 + GCAGAAGTAGGGTTGTCGCCGGTCATCAACAATCCAAATGAACTCCTACGGTTTGTAGACAATA--TTAAAAACTGTAT------------------TTAA----C-----TGCCTT----CCCACAA----GAA-A------TCACCAACACA--AAGGGAGCGACAACC-CAACGCCTGCGCCCAGAAAACTGGCCGTCTG---TTTTT-------------CCGA-----GTTTTCTTTTAA------C-CCAGAACTTGCGTT----TTCTCT-G--TG-----------------------------CAG----------------TC-CC-TGCC------------------------------------GCG----CCATACAATTTATT---TC---ATTA-GC--AGCGCAT--ATTAT---------TTTTA--CTTTA
droYak3 v2_chrUn_649:3309-3566 + GCAGAAGTAGGGCTGTCGCCGGTCATCAACAATCCAAATGAGCTCCTACGGTTTGTAAACAATA--TTAAAAACTGAAT------------------TTAA----C-----TGCCTT----CCCATAA----GAA-A------TACCAAACACA---AGGGAGCGACAACC-CACCGCCTGCGCCCAGAAAACTGGCCGAATG---TTTTT-------------CCGA-----TTTATCTTTTAG------C-CCACAACTTGCGTT----TTCCCT-G--TG-----------------------------CAG----------------TC-AA-CGCC------------------------------------GCG----CCATACATTTTATT---TT---ATTA-GC--AGCGCAT--ATTAT---------TATTT--CTTTA
droEug1 scf7180000409759:403493-403767 + GCAGAAGTAGGGTAGTCGCCGGCCATCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TTAAAACCTGAAT------------------ATAA----C-----TGCTTT----CCCACAA----GAA-A------CCACAAACACA--AAAGGAGCGACAGCC--ACCAACCGTGCCTAAAAAAGTGGCCGACCA---TTTTTCGAGC----C---CTAA-----GTTTGCATTTGA------C-CCG-ATTATTTGT-TATTTT----C---------------TG-----------CTGCCTCAA----------------TC-AT-TGCC------------------------------------GCGCGCCCCATACATTTTGTTGTTGC---TTTA-GC--AGTACAT--ATA-T---------TAGTA-TTATTA
droBia1 scf7180000302411:182737-183000 + CCAGAAGTAGGGTTGTCGTCGGCATTCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--ATAAAACCTGAAT------------------AAAA----C-----TGCTTT----TTCACAA----GAA-A------TCACCAACACA--AGAGAAGCGACAGCC-CCCCGCCCGAGCCCAGAAACTTGGTTGACTT---CTTTC-------------CTTG-----GTTT----TTTA------C-ACG-AAGTTTTGT-TATTTG----C---------------CC-----------CTGCCTCAG----------------TC-ATTGGCC------------------------------------GCGCGTCCCATACATATTGTT---GC---AT-A-GC--AGTGCAT--CTTAT---------TATTA-TTATTA
droTak1 scf7180000415789:885213-885485 + -CAGAAGTAGGGTTGTCGCCGGCCATCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TAAAAACCTGAAT------------------TTAA----C-----TGCTTT----TCCACAA----GAA-A------TCACAAACACA--GAAGAAGCGACAGCC-CACCGCCCGTGCCCAGAAACCTGGTCGACTT---TTTTTCGAGC----C---CAGA-----GTTTTGCTTTGA------C-CAG-AACTTTCGT-TCTTTG----C---------------CC-----------CTGCCTCAG----------------TC-AT-TGCC------------------------------------GCGCGTCCCATTCATTTTGTTGTTGC---CTTG-GC--AGTGCAT--ATTAT---------TATT----ATTA
droEle1 scf7180000491104:2210515-2210801 + GCAGAAGTAGGGTTGTCGTCGGCCATCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TTAAAACCTGAAT------------------TAAA----C-----TGCTTT----CCCACAA----TAA-A------TCACCAACACA--AAAGGAGCGACAGCC-AACCGCCCGCGCATAGCAATCTGCTCGACTA---TTTTTCGTGT----C---CTGA-----GTTTGCCTTTAA------T-CCGTTATT-TCGT-TGTTTT----C---------------TT-----------CTGTCTCAG----------------TC-ATTTGCC------------------------------------GCGCGTCCCATATATTTTGTTGTTGC---ATCAGGGCCAGTGCAT--ATTATTATTAT---TACTA-TTATTA
droRho1 scf7180000777453:15476-15763 + GCAGAAGTAGGGTTGTCGCCGGCCATCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TTAAAACCTGAAT------------------TTAA----C-----TGCTTT----CCCACAA----GAA-A------TCACAAACACA--AAAGGAGCGACAGCC-TACCGCCCGCGCCCAGCCATCTGGTCGACCA---TTTTTCGTGC----C---CTGA-----GTTTACCTTTGA------T-CCG-TATTTTCGT-TGTTTT----C---------------TT-----------CTGCCTCAG----------------TC-ATTTGCC------------------------------------GCGCGTCCCATACATTTTGTTGTTGC---TTTA-GC-CAGTGCAT--ATTATTATTATTATTATTA-TTATTA
droFic1 scf7180000453903:61956-62237 + ACAGAAGTAGGGTTGTCTCCGGCCGTCAGATATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TTAAAAATTGAAT------------------TAGA----C-----CGCTTT----CCCACAA----GAA-A------TCACCCACACA--AAAGGAGCGACAACC-TGCCGCCCGCGCCCAGATCCCTGGTCGTCTA---TTTTCCGTGC----C---CTGA-----GTTTGATTTCGA------T-CTA-AACTTTCGT-TGTTT-CGTTA---------------TT-----------CTGCCTCTG----------------TC-ATTTGCC------------------------------------GCGCGTCCCATACATTTTGTTATTGC---ATTA-GC-GAGTGCAT--ATTAT---------TATTG-TTATTA
droKik1 scf7180000302634:149708-149979 + GCAAAAGCAGGGTTGTCACTGGCCGTCAGCTAT---AATGAACTCCTACGGTTTGTAGACAGAA--TTAAAACTTGAAT------------------TTAA----C-----TGCTTT----CCCACAA----GAA-A------TCACCAACACA--AAAGGAGCGACAGCC-TGCCGCCATTGCCCCGCCGCCC-GTCGATCA---TTTTACGAGC----C----------------GCTTTTTG------T-TCGCTATTTTCGT-TCTTTG---------G----------CC--C--------CCCCTTCA--------------------ATTCGCC------------------------------------GCGCGTCCCATACATTTTGTTCTTGC---ATTTTGCACAGTGTAT--ATTATTATTAT---TATT---ATTTA
droAna3 scaffold_13340:13287217-13287477 - GCAGCA-CAGGGTGTTCGCCGGCCAGCAG-AATCCAAATGAACTCCTACGGTTTGTAGACCA-A--TTGAATATTGTAT------------------TTAG----C-----CGCTTT-----CCACAA----GAA-A------TCACCAACACA--AAAGGAGCGACAGCC-TGCCACCTGCGCTCGAGAAAGT-GTGGAACA---CTTTTCGAGC----TCCTCTGA-----TTTCG-CTTTGT------T-GCG-AATTT-------------------------------------CTTTTTA--GTTTCCG----------------CC-AT-TGTC------------------------------------GCGCGCCCCATACATTTTGTTGTTGTTGTATCC-GCTCAGTGCAT--TTTAT---------T-----------
droBip1 scf7180000396691:2158300-2158560 - GCAGCA-CAGGGTGTTCGCCGGCCAGCAG-AATCCAAATGAACTCCTACGGTTTGTAGACAA-A--TTGAATATTGTAT------------------TTAG----C-----CGCTTT-----CCACAA----AAA-A------TCACCAACACA--AGAGGAGCGACAGCC-TGCCACAAGCGCCCGAAAACGT-GTGGAGCA---CTTTTCGAGC----TCCTCTGA-----CTTCG-CTTTGT------T-GCG-AATTT-------------------------------------CTTTTTA--GTTTCCG----------------CC-AT-TGCC------------------------------------GCGCGCCCCATACATTTTGTTGTTGTTGTATCC-GCTCAGTGCAT--TTTAT---------T-----------
dp5 2:20332997-20333229 + dps_674 -----------------------------CAATCCAAATGAACTCTTACGGTTTGTAGA---AA--TTAAAAACTTAAT------------------TTAA---AC-----TGCTTT----ACCACAA----GAA-A------TCACCAACACA--AAAGGAGCGACAGCCATACCGCCAGTGCCCCATAGACGAGTTGATAT---TTTTGAGTGCCCGCC---CTGTGTTCGGTTCGCTTTTAT------T-TCACAATTTCAGTT----TTCTTTTGTTTG--------------------------CCCTCC----------------TC-GTTTGCC------------------------------------A------TCATACATTTTTTTG------------------TGCAT--TATAT------------------TTT
droPer2 scaffold_3:3084657-3084886 + -----------------------------CAATCCAAATGAACTCTTACGGTTTGTAGA---AA--TTAAAAACTTAAT------------------TTAA---AC-----TGCTTT----ACCACAA----GAA-T------TCACCAACACA--AAAGGAGCGACAGCCATACCGCCAGTGCCCCATAGACGAGTTGATAT---TTTTGAGTGCCCGCC---CTGTGTTCGGTTCGCTTTTAT------T-TCACAATTTCTGTT----TTCTTTTGTTTG--------------------------CCCTCC----------------TC-GTTTGCC------------------------------------A------TCATACATTTTTTTGT------------------GT----------------------A-TTATAT
droWil2 scf2_1100000004902:966391-966672 - T---------------CGTCTGGCATCT--AAATGAAATGAGTTCATACGGTTTGTAGTTAAAAAATTA-----TGAATCTTTAAACATAATAAACCTTAAACAATTGCAATGCTTA-AATGCCACAAACAAAGACAA--CAATCACCAACACA--AAAGGAGCGACTGCC---------GTTTCTAGAATT----------G------------C----TGTTTTAA-----TTTAG-CTTTGT------CGCCGCTCCCACTGCC----TC------CCCACCCACATCGCCC--CTGTT--------CTTCATCATGCCTATGGCGCCGCGA-TTGCC------------------------------------A-----CTCATACATTT-GTT---GT---AA-------------T--ATTTT---------TGTAT-ATTATA
droVir3 scaffold_13047:6392212-6392231 + GTGTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTT---------TATG---TGTAA
droMoj3 scaffold_6540:1686398-1686627 - -------------------------------------ATGAACACTTACGGTTTGTAGTTGAAA--ATAACAATTATTT------------------TTAG----T-----TAATTTGCTTACCACAA-AACGAATATTAC--TACCCAACATAATAAGGGAGCGACAGAG-AAT--------------TTTATGATCG----------------------------------ATTTGCGTTTATAAGTGCT-GTTCAATTTC-ATT----CTATTTTGTATGCGCTTTGTTATAGATCCTTTTTA--GCCTAC---------CTCACGCACACA-C----------------ACACACACAAAC--------------G-------------------------------AATCTGTGT----------------------A-CATTTG
droGri2 scaffold_14906:11706475-11706745 + -------------------------------------ATGAACACTTACGGTTTGTAGCTGAAA--ATAACAATTAAAT------------------TTAA----T-----TAATTTGCTTACCACAA-CAAGAATAT--C---ACCCAACAAAATAAAGGAGCGACATA---------------AAGATTCATAGTTGATTTACGTT----------------TTAA-----GTGCCGTTCTGT------T-CCGTTTTTTGTGTT----TG------TATGCGCTTTTTGATA--TCCTT--------TTCAATTATCTCTCTCACGCACACA-CAGCCACTGACACAGACACAGACACAAACACGCAGCTAGCAGCGAGTTGTATACAT----------------------------------TTT---------TATTATGTGTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACAGAAGTAGGGTTGTCGCCGGCCATCAACAATCCAAATGAACTCCTACGGTTTGTAGACAATA--TTAAAAACTGAAT------------------TTAA----C-----TGCCTT----CCCACAA----GAA-A------TCACCAACACA--AAGGGAGCGACAACC-CACCGCCTGCGCCCAGAAACCTGGTCGACTG---TTTTC-------------CCCA-----GTTTTCTTTTGA------C-CCGCAACCTGCGTT----TGCTCT-G--TG-----------------------------CA---------------------------------------------------------------G------CCATACATTTTATT---TC---ATTA-GCAAAGCGCAT--ATTTT---------TATAA--TTTTASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................TACGGTTTGTAGACAATA--TTAAAAAC........................................................................................................................................................................................................................................................................................................................................................................................2615.00500000013000001000
...............................................................................................................................................................................................................TTTC-------------CCCA-----GTTTTCTTTTGA------C-.....................................................................................................................................................................................................2112.00200000000020000000
................................TCCAAATGAACTCCTACGGTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................2312.00220000000000000000
........................................................................................................................................................................ACC-CACCGCCTGCGCCCAGAAACCTGG..............................................................................................................................................................................................................................................................2711.00100000001000000000
..AGAAGTAGGGTTGTCGCCGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
..............................................................................................................................AA----GAA-A------TCACCAACACA--AA....................................................................................................................................................................................................................................................................................................1911.00100001000000000000
...............................................................................................................................................................................................................................................................................TGCTCT-G--TG-----------------------------CA---------------------------------------------------------------G------CCATACATTTTATT---.................................................2611.00100000000000010000
..............................................TACGGTTTGTAGACAATA--TTAAAAA.........................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
................................TCCAAATGAACTCCTACGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
...............................................................................................................................................................................................................TTTC-------------CCCA-----GTTTTCTTTTGA------.......................................................................................................................................................................................................2011.00100001000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTATT---TC---ATTA-GCAAAGCGCA.............................2111.00100001000000000000
........................................................AGACAATA--TTAAAAACTG......................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
....................................................TTGTAGACAATA--TTAAAAACTGAAT------------------.................................................................................................................................................................................................................................................................................................................................................................2511.00100000001000000000
...................................................TTTGTAGACAATA--TTAAAAACT.......................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
..........................CAACAATCCAAATGAACTC.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
..................................CAAATGAACTCCTACGGTTTGT..........................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................ATTA-GCAAAGCGCAT--ATTTT---------T...........2111.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................ACATTTTATT---TC---ATTA-GCA....................................1911.00100001000000000000
.....AGTAGGGTTGTCGCCGGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2040.25100000000000001000
droSec2
ACAGATGTAGGGTTGTCGCCGGCCATCAACAATCCAAATGAACTCCTACGGTTTGTAGACAATA--TTAAAAACTGAAT------------------TTAA----C-----TGCCTT----CCCACAA----GAA-C------TCACCAACACA--AAGGGAGCGACAACC-CACCGCCTGCGCCCAGAAACCTGGTCGACTG---TTTTC-------------CCCA-----GTTTTCTTTTGA------C-CCACAACCTGCGTT----TGCTTT-G--TG-----------------------------CA---------------------------------------------------------------G------CCATACATTTTATT---TC---ATTA-GCAAAGCGAAT--ATTTT---------TATAA--TTTTASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....TGTAGGGTTGTCGCCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
....................................................................................................................................................................................GCGCCCAGAAACCTGGTCGACTG---TTTT................................................................................................................................................................................................................................................2711.0011000
dm3
ACAGAAGTAGGGTTGTCGCCGGCCATCAACAATCCAAATGAACTCCTACGGTTTGTAGACAATA--TTAAAAACTGAAT------------------TTAA----C-----TGCCTT----CCCACAA----GAA-A------TCACCAACACA--AAGGGAGCGACAACC-CACCGCCTGCGCCCAGAAACCTGGTCGACTG---TTTTC-------------CCGA-----GTTTTCTTTTGG------C-CCACAACCTGCGTT----TGCTCT-G--TG-----------------------------CAG----------------TC-AC-TGCC------------------------------------GCG----CCATACATTTTATT---TC---ATTA-GCGAAGCCCATATATATT---------TATAA--TTTTASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..AGAAGTAGGGTTGTCGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1819.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000100002000000000000000000002000000000000010000000
......GTAGGGTTGTCGCCGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................1815.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000001300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................AACACA--AAGGGAGCGACAACC-......................................................................................................................................................................................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000200000000000000001000
..............................................TACGGTTTGTAGACAATA--TTAAAAACT.......................................................................................................................................................................................................................................................................................................................................................................................2714.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGTAGGGTTGTCGCCGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......GTAGGGTTGTCGCCGGCCATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........AGGGTTGTCGCCGGCCATCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................2213.0030000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................CACCAACACA--AAGGGAGCGACAA.........................................................................................................................................................................................................................................................................................2313.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................GGTTTGTAGACAATA--TTAAAAACT.......................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TCT-G--TG-----------------------------CAG----------------TC-AC-TGCC------------------------------------GCG----CC................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAAGTAGGGTTGTCGCCGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000010000000000000000000000000
.....................................................................................................................................AA-A------TCACCAACACA--AAGGGAGC..............................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........GGTTGTCGCCGGCCATCAACAATC................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAAGTAGGGTTGTCGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAAGTAGGGTTGTCGCCGGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000
.........................................................................................................................................................A--AAGGGAGCGACAACC-CACCGCCTGCG...........................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................TT----TGCTCT-G--TG-----------------------------CAG----------------TC-AC-TGC..............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................CACAACCTGCGTT----TGCTCT-G--TG-----------------------------CAG----------------T......................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TGCGTT----TGCTCT-G--TG-----------------------------CAG----------------TC-AC-TGCC------------------------------------GC.......................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................AAATGAACTCCTACGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..............................................................................T------------------TTAA----C-----TGCCTT----CCCACAA----GAA-A------TCACC..............................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
ACAGAAGTAGGGTTGTCGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.........................................................................................................................................................A--AAGGGAGCGACAACC-CACCGC................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGTAGGGTTGTCGCCGGCCATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAAGTAGGGTTGTCGCCGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATGAACTCCTACGGTTTGTAGAC......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................CGCCCAGAAACCTGGTCGACTG---TTTTC-------------CC................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ACACA--AAGGGAGCGACAACC-CACCG.................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
........................................................................................................................................................CA--AAGGGAGCGACAACC-CACC..................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................ACACA--AAGGGAGCGACAACC-......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................TATT---TC---ATTA-GCGAAGCCCATATA.........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................AGACAATA--TTAAAAACTGA.....................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................CCTGGTCGACTG---TTTTC-------------CCGA-----GTTT.....................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TCAACAATCCAAATGAACTCCTACGC...............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGCTCT-G--TG-----------------------------CAG----------------TC-AC-TGCC------------------------------------G........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................TGCC------------------------------------GCG----CCATACATTTTATT---.................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................GGAGCGACAACC-CACCGCCTGCGCCC........................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................TCCTACGGTTTGTAGACAATA--TTAAAA..........................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................AGAAACCTGGTCGACTG---T...................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................AACACA--AAGGGAGCGACAACC-C.....................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TGCGTT----TGCTCT-G--TG-----------------------------CAG----------------TC-AC-TG...............................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..................................................................................................................................................CCAACACA--AAGGGAGCGACAACC-CACC..................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAAGTAGGGTTGTCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................AT------------------TTAA----C-----TGCCTT----CCCACAA----G.............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................G---TTTTC-------------CCGA-----GTTTTCTTTTGG------C-CCA..................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TTA-GCGAAGCCCATATATATT---------TAT.........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................T----TGCTCT-G--TG-----------------------------CAG----------------TC-AC-TG...............................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
.................................................................................................TTAA----C-----TGCCTT----CCCACAA----G.............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................CAGAAACCTGGTCGACTG---TTTTC-------------CC................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................CCACAACCTGCGTT----TGCTCT-G--.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CAA----GAA-A------TCACCAACACA--AAGGGAGC..............................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................CA--AAGGGAGCGACAACC-CACCGCC...............................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................TACGGTTTGTAGACAATA--................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000
................................TCCAAATGAACTCCTACGG...............................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................CAACACA--AAGGGAGCGAC...........................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................AGGGAGCGACAACC-CACCGCCTG.............................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCCTACGGTTTGTAGACAATA--TTAAAAAC........................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................TCACCAACACA--AAGGGAGCGAC...........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AGAAGTAGGGTTGTCGCCGGCCAT........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
...................................AAATGAACTCCTACGGTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................TGCTCT-G--TG-----------------------------CAG----------------TC-AC-TGCC------------------------------------GCG----C.................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................TTTTATT---TC---ATTA-GCGAAGCCC..............................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
..........................................CTCCTACGGTTTGTAGACAA....................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GTTGTCGCCGGCCATCAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................G--TG-----------------------------CAG----------------TC-AC-TGCC------------------------------------GCG----CC................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ATA--TTAAAAACTGAAT------------------TTAA----.........................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................CCAAATGAACTCCTACGGTT.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGTAGGGTTGTCGCCGGCCATCA......................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
ACAGAAGTAGGGTTGTCGCCG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................CTGCGCCCAGAAACCTGGTCGAC.........................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................CATCAACAATCCAAATGAACTCCT...................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................TGCGTT----TGCTCT-G--TG-----------------------------CAG----------------TC-AC-TGCC------------------------------------G........................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................TTGG------C-CCACAACCTGCGTT----TGC................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................ACCAACACA--AAGGGAGCGACAACC-CACC..................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCCTACGGTTTGTAGACAATA--TTAAA...........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................ATGAACTCCTACGGTTTG...........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................C-CCACAACCTGCGTT----TGCTC..............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AGTAGGGTTGTCGCCGGATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................TC-------------CCGA-----GTTTTCTTTTGG------A-TA...................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCAGAAGTAGGGTTGTCGCCGGTCATCAACAATCCAAATGAACTCCTACGGTTTGTAGACAATA--TTAAAAACTGTAT------------------TTAA----C-----TGCCTT----CCCACAA----GAA-A------TCACCAACACA--AAGGGAGCGACAACC-CAACGCCTGCGCCCAGAAAACTGGCCGTCTG---TTTTT-------------CCGA-----GTTTTCTTTTAA------C-CCAGAACTTGCGTT----TTCTCT-G--TG-----------------------------CAG----------------TC-CC-TGCC------------------------------------GCG----CCATACAATTTATT---TC---ATTA-GC--AGCGCAT--ATTAT---------TTTTA--CTTTASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................ACTTGCGTT----TTCTCT-G--TG-----------------------------..........................................................................................................................................1812.0020000020
...............................ATCCAAATGAACTCCTACGGTTT............................................................................................................................................................................................................................................................................................................................................................................................................2311.0011000000
..........................................................................................................................................................................................................................................................................T----TTCTCT-G--TG-----------------------------CAG----------------TC-CC-T................................................................................................................1811.0011000000
.................................................................................................................................................................AGCGACAACC-CAACGCCTGC............................................................................................................................................................................................................................................................................2011.0011000000
...........................AACAATCCAAATGAACTCCTACGGC..............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000
........................................................................................................................................A------TCACCAACACA--AAGGGAGCGACA..........................................................................................................................................................................................................................................................................................2411.0011000000
..AGAAGTAGGGTTGTCGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
droYak3
GCAGAAGTAGGGCTGTCGCCGGTCATCAACAATCCAAATGAGCTCCTACGGTTTGTAAACAATA--TTAAAAACTGAAT------------------TTAA----C-----TGCCTT----CCCATAA----GAA-A------TACCAAACACA---AGGGAGCGACAACC-CACCGCCTGCGCCCAGAAAACTGGCCGAATG---TTTTT-------------CCGA-----TTTATCTTTTAG------C-CCACAACTTGCGTT----TTCCCT-G--TG-----------------------------CAG----------------TC-AA-CGCC------------------------------------GCG----CCATACATTTTATT---TT---ATTA-GC--AGCGCAT--ATTAT---------TATTT--CTTTASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................ACTTGCGTT----TTCCCT-G--TG-----------------------------C.........................................................................................................................................1920.50100100000000
.........................................GCTCCTACGGTTTGTAAACAATA--................................................................................................................................................................................................................................................................................................................................................................................................2320.50100100000000
..........................................................................TGAAT------------------TTAA----C-----TGCCTT----CCCA.....................................................................................................................................................................................................................................................................................................................................2020.50100100000000
........................ATCAACAATCCAAATGAGCTCCTA..................................................................................................................................................................................................................................................................................................................................................................................................................2420.50100100000000
...............................ATCCAAATGAGCTCCTACGGT..............................................................................................................................................................................................................................................................................................................................................................................................................2120.50100000010000
droEug1
GCAGAAGTAGGGTAGTCGCCGGCCATCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TTAAAACCTGAAT------------------ATAA----C-----TGCTTT----CCCACAA----GAA-A------CCACAAACACA--AAAGGAGCGACAGCC--ACCAACCGTGCCTAAAAAAGTGGCCGACCA---TTTTTCGAGC----C---CTAA-----GTTTGCATTTGA------C-CCG-ATTATTTGT-TATTTT----C---------------TG-----------CTGCCTCAA----------------TC-AT-TGCC------------------------------------GCGCGCCCCATACATTTTGTTGTTGC---TTTA-GC--AGTACAT--ATA-T---------TAGTA-TTATTASizeHit CountTotal NormTotal
No Reads
droBia1
CCAGAAGTAGGGTTGTCGTCGGCATTCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--ATAAAACCTGAAT------------------AAAA----C-----TGCTTT----TTCACAA----GAA-A------TCACCAACACA--AGAGAAGCGACAGCC-CCCCGCCCGAGCCCAGAAACTTGGTTGACTT---CTTTC-------------CTTG-----GTTT----TTTA------C-ACG-AAGTTTTGT-TATTTG----C---------------CC-----------CTGCCTCAG----------------TC-ATTGGCC------------------------------------GCGCGTCCCATACATATTGTT---GC---AT-A-GC--AGTGCAT--CTTAT---------TATTA-TTATTASizeHit CountTotal NormTotal
No Reads
droTak1
-CAGAAGTAGGGTTGTCGCCGGCCATCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TAAAAACCTGAAT------------------TTAA----C-----TGCTTT----TCCACAA----GAA-A------TCACAAACACA--GAAGAAGCGACAGCC-CACCGCCCGTGCCCAGAAACCTGGTCGACTT---TTTTTCGAGC----C---CAGA-----GTTTTGCTTTGA------C-CAG-AACTTTCGT-TCTTTG----C---------------CC-----------CTGCCTCAG----------------TC-AT-TGCC------------------------------------GCGCGTCCCATTCATTTTGTTGTTGC---CTTG-GC--AGTGCAT--ATTAT---------TATT----ATTASizeHit CountTotal NormTotal
No Reads
droEle1
GCAGAAGTAGGGTTGTCGTCGGCCATCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TTAAAACCTGAAT------------------TAAA----C-----TGCTTT----CCCACAA----TAA-A------TCACCAACACA--AAAGGAGCGACAGCC-AACCGCCCGCGCATAGCAATCTGCTCGACTA---TTTTTCGTGT----C---CTGA-----GTTTGCCTTTAA------T-CCGTTATT-TCGT-TGTTTT----C---------------TT-----------CTGTCTCAG----------------TC-ATTTGCC------------------------------------GCGCGTCCCATATATTTTGTTGTTGC---ATCAGGGCCAGTGCAT--ATTATTATTAT---TACTA-TTATTASizeHit CountTotal NormTotal
No Reads
droRho1
GCAGAAGTAGGGTTGTCGCCGGCCATCAGCAATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TTAAAACCTGAAT------------------TTAA----C-----TGCTTT----CCCACAA----GAA-A------TCACAAACACA--AAAGGAGCGACAGCC-TACCGCCCGCGCCCAGCCATCTGGTCGACCA---TTTTTCGTGC----C---CTGA-----GTTTACCTTTGA------T-CCG-TATTTTCGT-TGTTTT----C---------------TT-----------CTGCCTCAG----------------TC-ATTTGCC------------------------------------GCGCGTCCCATACATTTTGTTGTTGC---TTTA-GC-CAGTGCAT--ATTATTATTATTATTATTA-TTATTASizeHit CountTotal NormTotal
No Reads
droFic1
ACAGAAGTAGGGTTGTCTCCGGCCGTCAGATATCCAAATGAACTCCTACGGTTTGTAGACAGAA--TTAAAAATTGAAT------------------TAGA----C-----CGCTTT----CCCACAA----GAA-A------TCACCCACACA--AAAGGAGCGACAACC-TGCCGCCCGCGCCCAGATCCCTGGTCGTCTA---TTTTCCGTGC----C---CTGA-----GTTTGATTTCGA------T-CTA-AACTTTCGT-TGTTT-CGTTA---------------TT-----------CTGCCTCTG----------------TC-ATTTGCC------------------------------------GCGCGTCCCATACATTTTGTTATTGC---ATTA-GC-GAGTGCAT--ATTAT---------TATTG-TTATTASizeHit CountTotal NormTotal
No Reads
droKik1
GCAAAAGCAGGGTTGTCACTGGCCGTCAGCTAT---AATGAACTCCTACGGTTTGTAGACAGAA--TTAAAACTTGAAT------------------TTAA----C-----TGCTTT----CCCACAA----GAA-A------TCACCAACACA--AAAGGAGCGACAGCC-TGCCGCCATTGCCCCGCCGCCC-GTCGATCA---TTTTACGAGC----C----------------GCTTTTTG------T-TCGCTATTTTCGT-TCTTTG---------G----------CC--C--------CCCCTTCA--------------------ATTCGCC------------------------------------GCGCGTCCCATACATTTTGTTCTTGC---ATTTTGCACAGTGTAT--ATTATTATTAT---TATT---ATTTASizeHit CountTotal NormTotal
No Reads
droAna3
GCAGCA-CAGGGTGTTCGCCGGCCAGCAG-AATCCAAATGAACTCCTACGGTTTGTAGACCA-A--TTGAATATTGTAT------------------TTAG----C-----CGCTTT-----CCACAA----GAA-A------TCACCAACACA--AAAGGAGCGACAGCC-TGCCACCTGCGCTCGAGAAAGT-GTGGAACA---CTTTTCGAGC----TCCTCTGA-----TTTCG-CTTTGT------T-GCG-AATTT-------------------------------------CTTTTTA--GTTTCCG----------------CC-AT-TGTC------------------------------------GCGCGCCCCATACATTTTGTTGTTGTTGTATCC-GCTCAGTGCAT--TTTAT---------T-----------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.....................................ATGAACTCCTACGGTTTGTAGACC.....................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
..............................AATCCAAATGAACTCCTACGG...............................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
................................................................................................................................................................................ACCTGCGCTCGAGAAAGT-GTG............................................................................................................................................................................................................................................................2111.001000010
..AGCA-CAGGGTGTTCGCCGGCCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................................................................................................TAG----C-----CGCTTT-----CCACAA----GAA-A------TCACCAA............................................................................................................................................................................................................................................................................................................2711.001100000
.............................................................................................................................................................................................................................CCTCTGA-----TTTCG-CTTTGT------.......................................................................................................................................................................................................1811.001001000
droBip1
GCAGCA-CAGGGTGTTCGCCGGCCAGCAG-AATCCAAATGAACTCCTACGGTTTGTAGACAA-A--TTGAATATTGTAT------------------TTAG----C-----CGCTTT-----CCACAA----AAA-A------TCACCAACACA--AGAGGAGCGACAGCC-TGCCACAAGCGCCCGAAAACGT-GTGGAGCA---CTTTTCGAGC----TCCTCTGA-----CTTCG-CTTTGT------T-GCG-AATTT-------------------------------------CTTTTTA--GTTTCCG----------------CC-AT-TGCC------------------------------------GCGCGCCCCATACATTTTGTTGTTGTTGTATCC-GCTCAGTGCAT--TTTAT---------T-----------SizeHit CountTotal NormTotal
No Reads
dp5
-----------------------------CAATCCAAATGAACTCTTACGGTTTGTAGA---AA--TTAAAAACTTAAT------------------TTAA---AC-----TGCTTT----ACCACAA----GAA-A------TCACCAACACA--AAAGGAGCGACAGCCATACCGCCAGTGCCCCATAGACGAGTTGATAT---TTTTGAGTGCCCGCC---CTGTGTTCGGTTCGCTTTTAT------T-TCACAATTTCAGTT----TTCTTTTGTTTG--------------------------CCCTCC----------------TC-GTTTGCC------------------------------------A------TCATACATTTTTTTG------------------TGCAT--TATAT------------------TTTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
..............................AATCCAAATGAACTCTTACG................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................TCTTACGGTTTGTAGA---AA--TTAAAAAC........................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000010
droPer2
-----------------------------CAATCCAAATGAACTCTTACGGTTTGTAGA---AA--TTAAAAACTTAAT------------------TTAA---AC-----TGCTTT----ACCACAA----GAA-T------TCACCAACACA--AAAGGAGCGACAGCCATACCGCCAGTGCCCCATAGACGAGTTGATAT---TTTTGAGTGCCCGCC---CTGTGTTCGGTTCGCTTTTAT------T-TCACAATTTCTGTT----TTCTTTTGTTTG--------------------------CCCTCC----------------TC-GTTTGCC------------------------------------A------TCATACATTTTTTTGT------------------GT----------------------A-TTATATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................A-T------TCACCAACACA--AAAGGAGC..............................................................................................................................................................................................................................................................................................2111.001001000
droWil2
T---------------CGTCTGGCATCT--AAATGAAATGAGTTCATACGGTTTGTAGTTAAAAAATTA-----TGAATCTTTAAACATAATAAACCTTAAACAATTGCAATGCTTA-AATGCCACAAACAAAGACAA--CAATCACCAACACA--AAAGGAGCGACTGCC---------GTTTCTAGAATT----------G------------C----TGTTTTAA-----TTTAG-CTTTGT------CGCCGCTCCCACTGCC----TC------CCCACCCACATCGCCC--CTGTT--------CTTCATCATGCCTATGGCGCCGCGA-TTGCC------------------------------------A-----CTCATACATTT-GTT---GT---AA-------------T--ATTTT---------TGTAT-ATTATASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
GTGTAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTTT---------TATG---TGTAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
-------------------------------------ATGAACACTTACGGTTTGTAGTTGAAA--ATAACAATTATTT------------------TTAG----T-----TAATTTGCTTACCACAA-AACGAATATTAC--TACCCAACATAATAAGGGAGCGACAGAG-AAT--------------TTTATGATCG----------------------------------ATTTGCGTTTATAAGTGCT-GTTCAATTTC-ATT----CTATTTTGTATGCGCTTTGTTATAGATCCTTTTTA--GCCTAC---------CTCACGCACACA-C----------------ACACACACAAAC--------------G-------------------------------AATCTGTGT----------------------A-CATTTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................................................................................................................................................................................................................................................................................................CTAC---------CTCACGCACACA-C----------------A................................................................................................1811.001000010
droGri2
-------------------------------------ATGAACACTTACGGTTTGTAGCTGAAA--ATAACAATTAAAT------------------TTAA----T-----TAATTTGCTTACCACAA-CAAGAATAT--C---ACCCAACAAAATAAAGGAGCGACATA---------------AAGATTCATAGTTGATTTACGTT----------------TTAA-----GTGCCGTTCTGT------T-CCGTTTTTTGTGTT----TG------TATGCGCTTTTTGATA--TCCTT--------TTCAATTATCTCTCTCACGCACACA-CAGCCACTGACACAGACACAGACACAAACACGCAGCTAGCAGCGAGTTGTATACAT----------------------------------TTT---------TATTATGTGTAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 02:34 PM