ID:

dsi_9221

 Coordinate:

3l:7640774-7641037 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-9.7 -9.6 -9.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCCGCAAGGCTTTCACTCAATGATTCCCATTCCAATTTGTGCAAATCCTTAAATTTCAATTCAATTCGAATTTCATTCAATTCTCAATGAGTTACCATCAATTTGTTGGATTTTCGTATAGCGGTTCTTGATTTTACGATGTCAATTTAGCACGAAACAGTCTGTGAGCCATTGTTAACATTTAGTATTTGATATTCCAGCATTTTCGTTCGCCTCCTCGGGCCGTGACTTTGATCCGCGAACCAGAGCCTTCTCCGACGAGGAGCTCAAGCCGCAGCCGATGATCAAAAAGTCACGCAAGCAATTCGTTCCAGATGAGCTCAAGGACGACAAGTACTGGGCACGTCGCCGGAAGAACAACATT
************************************************************************************************************************************************************************************************.......((..(((.((((((......(((.((......)).))))))))).)))))..***************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
...................................................................................................................................................................................................................................................................................................................GTTCCAGATGAGCTCAAGGAC.................................... 21 0 1 5.00 5 2 3 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................................AATTCGTTCCAGATGAGCTCAAGGAC.................................... 26 0 1 4.00 4 3 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................AGATGAGCTCAACGA..................................... 15 1 17 3.06 52 0 0 0 8 25 0 17 2 0 0
......................................................................................................................................................................................................................................TTGATCCGCGAACCAGAGCCT................................................................................................................. 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................AAGGACGACAAGTACTGGGCACGT.................. 24 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................AAGTACTGGGCACGTCGCCGGAAGAAC...... 27 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................CTTTGATCCGCGAACCAGAGC................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................GGGCACGTCGCCGGAAGAAC...... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................AGATGAGCTCAACGAGAACA................................ 20 3 16 1.38 22 0 0 0 10 4 0 8 0 0 0
................................................................................................................................................................................................TATTCCAGCATTTTCGTTCGCCTC.................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CATTCCAGATGAGCTCAAGGACG................................... 23 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................ACAAGTACTGGGCACGTCGCCGGAAG......... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................TCCGACGAGGAGCTCAAGCCGCAGCCGAT.................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GCCGTGACTTTGATCCGCGAACC........................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................AGTTACCATCATTTAGTTGGGT............................................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CGTTCCAGATGAGCTCAAGGAC.................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................GCTCAAGCCGCAGCCGATGATCA............................................................................. 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................CTCAAGGACGACAAGTAC........................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................CCTCGGGCCGTGACTTTGATCCG.............................................................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................CCGACGAGGAGCTCAAGCCGCAGCCGA................................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................CGTTCCAGATGAGCTCAAGGACG................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................TGCGTTCGCATCCTCGGGCCGG.......................................................................................................................................... 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................TCTTGATTCTTCGATGTC............................................................................................................................................................................................................................. 18 2 6 0.50 3 0 2 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................CAAATGAGCTCAAGGACGA.................................. 19 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................GTTACCATCATTTAGTTGG............................................................................................................................................................................................................................................................... 19 2 6 0.33 2 0 0 0 2 0 0 0 0 0 0
..CGCAAGGCTTAAACTCAAAGA..................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
..CGCAAGGCTGAAACTCAATGA..................................................................................................................................................................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................CCTTTTCCGTCGAGGAGC.................................................................................................. 18 2 4 0.25 1 0 0 0 0 0 0 0 0 1 0
.............................TTTCAATTTGTGCAAATTTTTAAAT...................................................................................................................................................................................................................................................................................................................... 25 3 4 0.25 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................AGCTCAAGGACGTCAAG.............................. 17 1 4 0.25 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................AGTTACCATCATTTAGTT................................................................................................................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0 0
.................CAATGATTCGGATTCCAA......................................................................................................................................................................................................................................................................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0
.........................................................................................AGTTACCATCATTCTGTT................................................................................................................................................................................................................................................................. 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GCCTTTCGTTCCAAATGAGC............................................ 20 3 12 0.08 1 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................................................................................................................................AGATGAGCTCAATGAGAACA................................ 20 3 14 0.07 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................AAACGACGATCAAAAAGTCA..................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GGGCGTTCCGAAAGTGAGTTACTAAGGGTAAGGTTAAACACGTTTAGGAATTTAAAGTTAAGTTAAGCTTAAAGTAAGTTAAGAGTTACTCAATGGTAGTTAAACAACCTAAAAGCATATCGCCAAGAACTAAAATGCTACAGTTAAATCGTGCTTTGTCAGACACTCGGTAACAATTGTAAATCATAAACTATAAGGTCGTAAAAGCAAGCGGAGGAGCCCGGCACTGAAACTAGGCGCTTGGTCTCGGAAGAGGCTGCTCCTCGAGTTCGGCGTCGGCTACTAGTTTTTCAGTGCGTTCGTTAAGCAAGGTCTACTCGAGTTCCTGCTGTTCATGACCCGTGCAGCGGCCTTCTTGTTGTAA
*****************************************************************************************************************.......((..(((.((((((......(((.((......)).))))))))).)))))..************************************************************************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
........................................................................................................................................................................................................................................................................................................................TCTACTCGAGTTCCTGCTGTT............................... 21 0 1 2.00 2 2 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................................CTCGAGTTCCTGCTGTTCAT............................ 20 0 1 1.00 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................GTGAACCAAGGTCTTCTCGAGT......................................... 22 3 2 1.00 2 0 2 0 0 0 0
......................................................................................................................................................................................................................................................TCGGAAGAGGCTGCTCCTCGA................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
.................................................................AGATTAAAGTAAGTTAAG......................................................................................................................................................................................................................................................................................... 18 1 2 0.50 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................CTAGGGGCATGGTCTCGGTAG............................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0
..................................................................................................................................................................................GAAAATCGTAAACTAGAAGGT..................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 1 0
......................................................................................................................................ATGCTACAGTTGCATCGC.................................................................................................................................................................................................................... 18 3 20 0.15 3 0 0 0 2 0 1
...................................................................................................................................................................................................................................TGAAAGTAGCCGCTTGTTCT..................................................................................................................... 20 3 7 0.14 1 0 0 0 1 0 0
....................................................................................................................................AGATGCTACAGTTGCATCG..................................................................................................................................................................................................................... 19 3 8 0.13 1 0 1 0 0 0 0
........................................................................................................................................................................................................................................................GGAAGAAGCTGCTACTCG.................................................................................................. 18 2 12 0.08 1 0 1 0 0 0 0
....................................................................................................................................................ACGTGTTTTGTCAGACAC...................................................................................................................................................................................................... 18 2 12 0.08 1 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................GAGCCCTGCAGCGGCCGTC......... 19 3 17 0.06 1 0 1 0 0 0 0
.............................................................................................................................................................................................................................................................AGGCTGCTCCTCGGG................................................................................................ 15 1 20 0.05 1 0 0 1 0 0 0

Generated: 04/24/2015 at 10:26 AM