ID:

dsi_9209

Coordinate:

3r:10767422-10767552 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-5.5	-4.7	-4.6

Flybase annnotation

exon [3r_10767350_10767421_-]; CDS [3r_10767350_10767421_-]; CDS [3r_10767553_10767610_-]; exon [3r_10767553_10767610_-]; intron [3r_10767422_10767552_-]

Repeatable elements

Name	Class	Family	Strand
AT_rich	Low_complexity	Low_complexity	+

mature

star

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------################################################## CGCCGTGATGCTAAAGGACTACAAAAAGGCATTGAAATATTGCAAATTGAGTGAGTAGAATACAAAATCAGATTCCAAAGTATGTCACCATGCTTCCAAGAGTTCGCTTTTTTGAGTCTGAAATTCAATCTACTGGGACTTTTATAATGTATAATTTATAATTTTATTCGCCCCGCTGCAGTCCTGCAATACGAGCCCGACAACGCCACGGCCAAAGAGTTCTATCCCCTC ****************************************************.......................(((((((....)))))))......********************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M023 head	M025 embryo	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries
.............................................................................AAGTAGGTCACCATGCT.........................................................................................................................................	17	1	1	1.00	1	0	1	0	0	0	0	0	0
......................................................................................ACCATGCTTCCAAGA..................................................................................................................................	15	0	2	1.00	2	2	0	0	0	0	0	0	0
......GATGCTAAAGGACTACAAAAAGGC.........................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	0	1	0	0	0
...................................................................................GTCGCCATGCTTCGAAGAGTGC..............................................................................................................................	22	3	1	1.00	1	0	0	1	0	0	0	0	0
......................................................GTAGAATACAAAATCAGATTCCAAAG.......................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0
........TGCTAAAGGACGATAAAAA............................................................................................................................................................................................................	19	2	5	0.60	3	2	0	0	0	0	1	0	0
............................................................................AAAGTAGGTCACCAGGCT.........................................................................................................................................	18	2	3	0.33	1	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................TACGGACCCGACAACGCC........................	18	2	3	0.33	1	0	0	1	0	0	0	0	0
.................................................................................................TAGAGTTCGTTTTTTTGTGTCTGAA.............................................................................................................	25	3	4	0.25	1	1	0	0	0	0	0	0	0
......................................................................................GCCATGCTTCCAAGA..................................................................................................................................	15	1	5	0.20	1	1	0	0	0	0	0	0	0
...................................................................................GATACCATGCTTCCAAGA..................................................................................................................................	18	2	5	0.20	1	0	1	0	0	0	0	0	0
........TGCTAAACGTTTACAAAAAGG..........................................................................................................................................................................................................	21	3	7	0.14	1	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................CCGAAATACGATCCCGACAA............................	20	3	8	0.13	1	0	0	0	0	0	0	1	0
..........................................................................CGAAAGTATGTCACC..............................................................................................................................................	15	1	11	0.09	1	0	1	0	0	0	0	0	0
..............................................................................................................................................TATAATGTGGAACTTATAATT....................................................................	21	3	11	0.09	1	0	0	0	0	0	0	0	1
.GCCGTGATGCGAAAG.......................................................................................................................................................................................................................	15	1	12	0.08	1	0	0	1	0	0	0	0	0
...........................................................................GAAAGTAGGTCACCAGGCT.........................................................................................................................................	19	3	13	0.08	1	0	1	0	0	0	0	0	0

Anti-sense strand reads

GCGGCACTACGATTTCCTGATGTTTTTCCGTAACTTTATAACGTTTAACTCACTCATCTTATGTTTTAGTCTAAGGTTTCATACAGTGGTACGAAGGTTCTCAAGCGAAAAAACTCAGACTTTAAGTTAGATGACCCTGAAAATATTACATATTAAATATTAAAATAAGCGGGGCGACGTCAGGACGTTATGCTCGGGCTGTTGCGGTGCCGGTTTCTCAAGATAGGGGAG ********************************************************************************************************************************.......................(((((((....)))))))......****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo	SRR553488 RT_0-2 hours eggs	M025 embryo
..........................................................................................ACGGAGGCTCTCAAGCGA...........................................................................................................................	18	2	6	0.50	3	2	0	1	0	0	0
....................................................................................AGTGGTACGAAGGTG....................................................................................................................................	15	1	3	0.33	1	0	1	0	0	0	0
.............................................................................ATGATACAGTGGTATGAAG.......................................................................................................................................	19	3	11	0.09	1	0	0	0	1	0	0
.............................................................................................AAGGTACTCAAGCGA...........................................................................................................................	15	1	11	0.09	1	0	0	0	0	1	0
.................................................................TTAGTCTAAAGTTTTATAGAGT................................................................................................................................................	22	3	11	0.09	1	0	0	1	0	0	0
.............................................................................TTCACCTAGTGGTACGAAG.......................................................................................................................................	19	3	16	0.06	1	0	0	0	1	0	0
........................................................................AAGGTTTCTTACTGTGG..............................................................................................................................................	17	2	18	0.06	1	1	0	0	0	0	0
..........................................................................................................................................................................................GTTATGCCCGTGCTGTTGA..........................	19	3	18	0.06	1	0	0	0	0	1	0
...................................................................................................................................................................................................GGGCTGTTGCGACGCGGGTT................	20	3	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 10:52 AM