ID:

dsi_9207

 Coordinate:

3l:16270109-16270258 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-8.2 -8.0 -7.9 -7.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GGGCCAGCTGGCGTGGAGAATTTTCAGCGAGAGCTCCGATTGCCACCGGCAGTGTGCGAGTATGATGATGAACTTTATGTGCGGCATGCCGCAGAACGAGCGACTGTGCAACTGCCACGGCTTGTGACTAGCGTTAACTCCTCTAATTCTGCTGATCTATAACCTAACCCCCTATCTCCACCCCCTCCTCCCTCTTGCAGACACATCCCGAAGGCGAAGGCAACGGCCATTGCCGATACGCCCGAACTGA
****************************************************************************************************.((..(((..........((.((((((.(((((................))))).)).))))))..............))).......))...********************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
....................................................................................................CGACTGTGCAACTGCCAC.................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0
.......................................................................................GCCGCAGAACGAGCGACTG................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................CTCCACCCCCTCCTCCCT......................................................... 18 0 1 1.00 1 1 0 0 0 0
................AGTATTTTCAGCGAG........................................................................................................................................................................................................................... 15 1 13 0.15 2 0 0 0 2 0
...CCATCTGGCGTGGAG........................................................................................................................................................................................................................................ 15 1 9 0.11 1 0 0 0 1 0
...............................................................................................................................................................................................................CCGATGGCGAAGGCA............................ 15 1 20 0.10 2 0 0 2 0 0
............................................................................................................................................................................................................ATACCGATGGCGAAGGCA............................ 18 2 10 0.10 1 0 0 1 0 0
.GGCTAGCTGACGTGGAG........................................................................................................................................................................................................................................ 17 2 16 0.06 1 0 0 1 0 0
...................................................................................................................................................................................................................AGTCGAAGGCAACGGGC...................... 17 2 18 0.06 1 0 0 0 0 1
..GCCAGCTGACGTGGA......................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0

Anti-sense strand reads

CCCGGTCGACCGCACCTCTTAAAAGTCGCTCTCGAGGCTAACGGTGGCCGTCACACGCTCATACTACTACTTGAAATACACGCCGTACGGCGTCTTGCTCGCTGACACGTTGACGGTGCCGAACACTGATCGCAATTGAGGAGATTAAGACGACTAGATATTGGATTGGGGGATAGAGGTGGGGGAGGAGGGAGAACGTCTGTGTAGGGCTTCCGCTTCCGTTGCCGGTAACGGCTATGCGGGCTTGACT
*********************************************************.((..(((..........((.((((((.(((((................))))).)).))))))..............))).......))...**************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
..................................................................................................................................................................................................................TTCCGCTTCCGTTGCCGG...................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0
................................................................................................................................ATCCCAGTTGAGGAGATTAA...................................................................................................... 20 2 1 1.00 1 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................TGCCGGTAAGGGCTA............. 15 1 6 0.50 3 0 0 3 0 0 0 0 0
..................................................................................................................................................................................GAGGGGGAGGAGGGAGAA...................................................... 18 1 3 0.33 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................CTGTGTAGGGCTTCA.................................... 15 1 4 0.25 1 0 0 1 0 0 0 0 0
......................................................................................ACGGGGTCTTGCTCG..................................................................................................................................................... 15 1 8 0.13 1 0 0 1 0 0 0 0 0
.....................................................................................................CTGAAGCGTTGAGGGTGCC.................................................................................................................................. 19 3 20 0.10 2 0 0 0 0 2 0 0 0
........................................................GCTCATTCTAGTACTTCAA............................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 1 1 0 0
.............................................................................................................................................................................................................AGGGCTTCCTCTTCC.............................. 15 1 15 0.07 1 0 0 0 1 0 0 0 0
...................................................................................................................................................................AAATGGGGGATACAGGTGG.................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0
....................................................................................................................GGCCGAATACTGGTCGCA.................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 03:57 AM