ID:

dsi_917

 Coordinate:

2r:3170488-3170637 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.1 -10.7 -10.4 -10.2

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. dsi_917  2r:3170507-3170533 +
  2. node_42909:106-132 -
star
  1. dsi_917  2r:3170564-3170590 +
  2. node_42909:49-75 -

Sense Strand Reads

TTTAGAACAGAAGCTAAAAAGCCCAACCAGTTCCAGATTCTACAATGCATGTTCAAGTGCTTCCCAAAATATTACCTTTATAGGAAAAACATGTGATGATTTGAGGCGAAAAATAATTTTACCGTATTAGTTTTTGATACCTTTGGTATATGACTAGTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCATAAAGTAGTTGCCTTCGTCACTGCGTTGAATATCACAGTTATAAAATGAAGATTAAAC
*********************************************************************........(((((....................(((((((((..((((........))))..)))))...)))).....)))))************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 O001
Testis
 M024
male body		 M025
embryo
 SRR553488
RT_0-2 hours eggs
.....................................................................TATTACCTTTATAGGAAAAACATGTGA.......................................................................................................................................................... 27 0 2 10.00 20 9 0 11 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGAATATCACAGTTATAAAATGAAGA...... 26 0 1 4.00 4 4 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTAGTTTTTGATACCTTTGGTATATGA................................................................................................. 27 0 2 2.50 5 2 0 3 0 0 0 0 0 0 0
........................................................................................ACATGTGATGATTTGAGG................................................................................................................................................ 18 0 2 2.00 4 3 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................TTTCTCCCTGTGCATAAAGTAGTTGCC............................................. 27 0 1 2.00 2 0 1 0 1 0 0 0 0 0 0
...........................................................................................TGTGATGATTTGAGGCGAAAAATAATT.................................................................................................................................... 27 0 2 2.00 4 2 1 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................TGCGTTGAATATCACAGTTATAAAA............ 25 0 2 2.00 4 0 4 0 0 0 0 0 0 0 0
.......................................................................TTACCTTTATAGGAAAAACATGTGA.......................................................................................................................................................... 25 0 2 2.00 4 2 0 2 0 0 0 0 0 0 0
......................................................................................................................................TGATACCTTTGGTATATGACTAGTGGC......................................................................................... 27 0 2 1.50 3 1 0 1 1 0 0 0 0 0 0
................................................................................TAGGAAAAACATGTGATGATTTGAGGC............................................................................................................................................... 27 0 2 1.50 3 3 0 0 0 0 0 0 0 0 0
...........................................................................................TGTGATGATTTGAGGCGAAAAATAAT..................................................................................................................................... 26 0 2 1.00 2 0 0 1 0 1 0 0 0 0 0
.....................................................................................................................................TTGATACCTTTGGTATATGACTAGTGGC......................................................................................... 28 0 2 1.00 2 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................TGTGCATAAAGTAGTTGCC............................................. 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................TTTTGATACCTTTGGTATATGAC................................................................................................ 23 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0
...........................................................................................................................................................................................................CCTTCGTCACTGCGTTGAATATCACAGT................... 28 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
.........................................ACAATGCATGTTCAAGT................................................................................................................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTTGCCTTCGTCACTGCGTTGAA............................ 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
................................................................................................TGATTTGAGGCGAAAAATAATTTTAC................................................................................................................................ 26 0 2 1.00 2 0 2 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGTTGCCTTCGTCACTGCGTTGAA............................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TTGCCTTCGTCACTGCGTTGAATATCACAGT................... 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..TAGAACAGAAGCTAAAAAGCCC.................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................TGCCTTCGTCACTGCGTTGAATATCAC...................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGAATATCACAGTTATAAAATGAAGAT..... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TAGTTGCCTTCGTCACTGCGTTGAATA.......................... 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................TGGTATATGACTAGTGGCTTCCTCA.................................................................................. 25 0 3 1.00 3 0 0 1 0 1 1 0 0 0 0
........................................................................TACCTTTATAGGAAAAACATGTGATGA....................................................................................................................................................... 27 0 2 1.00 2 1 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGCCTTCGTCACTGCGTTGAATATCACA..................... 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................AGTTGCCTTCGTCACTGCGT................................ 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
........................................................................................ACATGTGATGATTTGAGGCGAAAA.......................................................................................................................................... 24 0 2 1.00 2 0 0 0 0 0 0 2 0 0 0
................................................................................TAGGAAAAACATGTGATGATTTGAGG................................................................................................................................................ 26 0 2 1.00 2 0 1 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................TACCTTCGTCACTGCGTTGAATATCACA..................... 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TGATGATTTGAGGCGAAAAATAAT..................................................................................................................................... 24 0 2 1.00 2 0 0 1 0 1 0 0 0 0 0
......................................................................................................................................................................................TCCCTGTGCATAAAGTAGTTGCC............................................. 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................TTTGAGGCGAAAAATAATTTTACCGTA............................................................................................................................ 27 0 2 1.00 2 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGCCTTCGTCACTGCGTTGAATATCA....................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................TGCCTTCGTCACTGCGTTGAATATC........................ 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGAATATCACAGTTATAAAATGAAGA...... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TTCTCCCTGTGCATAAAGTAGTTGCCTTC.......................................... 29 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.............................................................................................TGATGATTTGAGGCGAAAAATAATT.................................................................................................................................... 25 0 2 1.00 2 0 0 2 0 0 0 0 0 0 0
........................................................................................................................................ATACCTTTGGTATATGACTAGTGGCT........................................................................................ 26 0 3 0.67 2 0 1 0 0 1 0 0 0 0 0
................................................................................................................................................................................TATTTCTCCCTGTGCATAAAG..................................................... 21 0 3 0.67 2 0 0 0 0 0 0 2 0 0 0
..................................................................................................................................................................TCCTCACTTTTGAATATTTCTCCCTG.............................................................. 26 0 3 0.67 2 0 0 0 2 0 0 0 0 0 0
....................................................................................................................................................TATGACTAGTGGCTTCCTCACTTTT............................................................................. 25 0 3 0.67 2 0 0 0 0 2 0 0 0 0 0
.............................................................................................................................................TTTGGTATATGACTAGTGGCTTCCTC................................................................................... 26 0 3 0.67 2 0 0 1 0 0 1 0 0 0 0
.................................................................................AGGAAAAACATGTGATGATTTGAGG................................................................................................................................................ 25 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................CGTCACTGCGTTGAATATCACAGTTA................. 26 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
......................................................................................AAACATGTGATGATTTGAGGCGAAAAA......................................................................................................................................... 27 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
..............................................................................TATAGGAAAAACATGTGATGATTTGAGG................................................................................................................................................ 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TGTGATGATTTGAGGCGAAAAATAA...................................................................................................................................... 25 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...................................................TTCAAGTGCTTCCCAAAATATTACCT............................................................................................................................................................................. 26 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................AAAACATGTGATGATTTGAGGCGA............................................................................................................................................. 24 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0
........................................................................................ACATGTGATGATTTGAGGCGA............................................................................................................................................. 21 0 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..............................................................................................GATGATTTGAGGCGAAAAATAATTT................................................................................................................................... 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................TGAGGCGAAAAATAATTTTACCGTA............................................................................................................................ 25 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
........................................................................TACCTTTATAGGAAAAACATGTGA.......................................................................................................................................................... 24 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................TTAGTTTTTGATACTTTTGGTATATGA................................................................................................. 27 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TGTGATGATTTGAGG................................................................................................................................................ 15 0 2 0.50 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................AGTTTTTGATACCTTTGGTATATGA................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................TGTGATGATTTGAGGCGAAAA.......................................................................................................................................... 21 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
......................................................................................................................................TGATACCTTTGGTATATGACTAGTGGCTT....................................................................................... 29 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0
....................................................TCAAGTGCTTCCCAAAATATTACCTT............................................................................................................................................................................ 26 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
................................................................................TAGGAAAAACATGTGATGATTTGAG................................................................................................................................................. 25 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
........................................................................................ACATGTGATGATTTGAGGCG.............................................................................................................................................. 20 0 2 0.50 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................GTTATAAAATGAAGA...... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................TTATAGGAAAAACATGTGATG........................................................................................................................................................ 21 0 2 0.50 1 0 0 0 1 0 0 0 0 0 0
....................................................................ATATTACCTTTATAGGAAAAACATGTGA.......................................................................................................................................................... 28 0 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGTATATGACTAGTGGCTTCCT.................................................................................... 23 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................CTCACTTTTGAATATTTCTCCCTGTGCA.......................................................... 28 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................TGGCTTCCTCACTTTTGAATATTTC.................................................................... 25 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGTATATGACTAGTGGCTTCCTC................................................................................... 24 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0
...............................................................................................................................................TGGTATATGACTAGTGGC......................................................................................... 18 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTGAATATTTCTCCCTGTGCATAAAGT.................................................... 28 0 3 0.33 1 0 0 0 1 0 0 0 0 0 0
.........................................................................................................................................TACCTTTGGTATATGACTAGTGGCTT....................................................................................... 26 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................TTTTGAATATTTCTCCCTGTGCA.......................................................... 23 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................TTTTGAATATTTCTCCCTGTGCATA........................................................ 25 0 3 0.33 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................TGGTATATGACTAGTGGCTTCCTCACTTT.............................................................................. 29 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................ATATGACTAGTGGCTTCCTCACTTT.............................................................................. 25 0 3 0.33 1 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................TCACTTTTGAATATTTCTCCCTGTGC........................................................... 26 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................TTTGAATATTTCTCTCTGTGCATA........................................................ 24 1 3 0.33 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................ATTTCTCCCTGTGCATA........................................................ 17 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................TGGTATATGACTAGTGGCTTCCTCACT................................................................................ 27 0 3 0.33 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................TTGGTATATGACTAGTGGCTTCCTC................................................................................... 25 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGAATATCACAGTTA................. 15 0 3 0.33 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................TATATGACTAGTGGCTTCCTCACT................................................................................ 24 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................TCACTTTTGAATATTTCTCCCTGTGCA.......................................................... 27 0 3 0.33 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................TGTTAGAAAATGAAGATTAA.. 20 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0
...................................................................................................................................................................................TTCTCCCTGTGCATA........................................................ 15 0 6 0.17 1 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................TACCTTCGGGATATGAGT............................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................CTTCCTTACTTTTGA........................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AAATCTTGTCTTCGATTTTTCGGGTTGGTCAAGGTCTAAGATGTTACGTACAAGTTCACGAAGGGTTTTATAATGGAAATATCCTTTTTGTACACTACTAAACTCCGCTTTTTATTAAAATGGCATAATCAAAAACTATGGAAACCATATACTGATCACCGAAGGAGTGAAAACTTATAAAGAGGGACACGTATTTCATCAACGGAAGCAGTGACGCAACTTATAGTGTCAATATTTTACTTCTAATTTG
*************************************************************************************************........(((((....................(((((((((..((((........))))..)))))...)))).....)))))********************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
........................TTGGTCAAGGTCTAAGATGTT............................................................................................................................................................................................................. 21 0 2 0.50 1 1 0 0 0 0 0
.................................................................................................................................................................................................................................GTGTGAATATTTTACTGCTA..... 20 2 3 0.33 1 0 1 0 0 0 0
..........................................................................................................................................................................................................CGGCAGCAGTTAGGCAACTT............................ 20 3 7 0.14 1 0 0 0 1 0 0
...............................................................................................................................................................................................................GGAGTGACGCACGTTATAGT....................... 20 3 7 0.14 1 0 0 1 0 0 0
..................................................................................................................................................................AGGAGTGAAAACTGA......................................................................... 15 1 17 0.06 1 0 0 1 0 0 0
..................................................................................................................................AAAAACTATGGAACC......................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0
.................................................AGGAGTTCACGAAGGGT........................................................................................................................................................................................ 17 2 20 0.05 1 0 0 1 0 0 0
........................................ATGTTACGTAGAAGTG.................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:3170438-3170687 + dsi_917 TTTAGAACAGAAGCTAAAAAGCCC-AACCAGTTCCAGATTCTACAATGCATGTTCAAGTGCTTCCCAAAATATTACCTTTATAGGAA-----AAACATGTGATGAT-----------------------------------TTGAGGCGAAAAATAATTTTACCGTATTAGTTTTTGATACCTTTGGTATATGACTAGTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCATAAAGTAGTTGC------------CTTCGTCACTGCGTTGAATAT---CACAGTTATAAAATGAA------------------GATTAAAC
droSec2 scaffold_109:14367-14621 + TTTAGAACAGAAGCTAAAAAGCCCAAACCAGTTCCAGATTCTACAATGCAGGTTCAAGTGCTTCCCAAAATAATACCTTTATAGGAATGTAAAAACATGTGATGAT-----------------------------------TTGTGGCGAAAAATAATTTTACCGTACTAGTTTTTGATACCTTTGGTATATGACT-TTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCATAAAGTAGTCGC------------CTTCGTCACTGCGTTGAATAT---CACAGTTATAAAATGAA------------------AATTAAAC
dm3 chrXHet:81098-81227 - AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTTTAGTTTTTGATACCTTTGGTATATGACTATTGGTTTCCTCACTTTTGAATATTTCTCACTGTGCATAAAGTAGTCGC------------CTTCGTCACTGCATTGAATAC---CACAGTTATAAAATGAA------------------GATTAAAC
droEre2 scaffold_4690:18744478-18744645 - ATCAAAAAAGAAGCTAATGACCCCCAACCAGTTCCATATTCTACAATGCAGGTACAAGGGCTTCCCAAAATATTACTTTTATACCAATATAAACAGAAGTGACGATCGACCCTCAATCACTCAAAAGTTCTGATATCACTTTTATGACTAAAAATTATTTTAC-----------------------------------------------TTTTG-------------------------------------------------------------------------------------------------------------
droYak3 chrXh:113482-113640 + AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTTAATTTTGGCTACCTTTGATGTTT--CTATTATTATCCTCACTCTTGAATATTTTTTGCTGTGCATGAAGTG--CGCTTTCCTGTAGTGCTTCGTCACTACGTGGACTACTAGCGCAGTCATAAAATTAACTTTTATGAGAACTCGATGATTAAAC
droRho1 scf7180000778808:18756-18807 - CT-AGAGAAGAACCTGCAGAGCCCCTACCAGTTCCAGATTCTACCGTACAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTTAGAACAGAAGCTAAAAAGCCC-AACCAGTTCCAGATTCTACAATGCATGTTCAAGTGCTTCCCAAAATATTACCTTTATAGGAA-----AAACATGTGATGAT-----------------------------------TTGAGGCGAAAAATAATTTTACCGTATTAGTTTTTGATACCTTTGGTATATGACTAGTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCATAAAGTAGTTGC------------CTTCGTCACTGCGTTGAATAT---CACAGTTATAAAATGAA------------------GATTAAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................TATTACCTTTATAGGAA-----AAACATGTGA..............................................................................................................................................................................................................................27210.0020000000911000000000
...............................................................................................................................................................................................................................................................................TGAATAT---CACAGTTATAAAATGAA------------------GA......2614.00400000040000000000
.......................................................................................................................................................................TTAGTTTTTGATACCTTTGGTATATGA..................................................................................................................................2722.50500000023000000000
..............................................................................................ACATGTGATGAT-----------------------------------TTGAGG.................................................................................................................................................................................1822.00400000031000000000
...........................................................................................................................................................................................................................TTTCTCCCTGTGCATAAAGTAGTTGC------------C..................................................................2712.00200010000001000000
.................................................................................................TGTGATGAT-----------------------------------TTGAGGCGAAAAATAATT.....................................................................................................................................................................2722.00400000021001000000
..........................................................................................................................................................................................................................................................................TGCGTTGAATAT---CACAGTTATAAAA..............................2522.00400000000004000000
........................................................................TTACCTTTATAGGAA-----AAACATGTGA..............................................................................................................................................................................................................................2522.00400000022000000000
...............................................................................................................................................................................TGATACCTTTGGTATATGACTAGTGGC..........................................................................................................................2721.50300010011000000000
.................................................................................TAGGAA-----AAACATGTGATGAT-----------------------------------TTGAGGC................................................................................................................................................................................2721.50300000030000000000
.................................................................................................TGTGATGAT-----------------------------------TTGAGGCGAAAAATAAT......................................................................................................................................................................2621.00200000001000010000
..............................................................................................................................................................................TTGATACCTTTGGTATATGACTAGTGGC..........................................................................................................................2821.00200000010000001000
...................................................................................................................................................................................................................................TGTGCATAAAGTAGTTGC------------C..................................................................1911.00100000000001000000
............................................................................................................................................................................TTTTGATACCTTTGGTATATGAC.................................................................................................................................2321.00200002000000000000
....................................................................................................................................................................................................................................................C------------CTTCGTCACTGCGTTGAATAT---CACAGT.....................................2821.00200000011000000000
..........................................ACAATGCATGTTCAAGT.........................................................................................................................................................................................................................................................................1711.00100000000001000000
...............................................................................................................................................................................................................................................AGTTGC------------CTTCGTCACTGCGTTGAA.................................................2411.00100000000001000000
......................................................................................................TGAT-----------------------------------TTGAGGCGAAAAATAATTTTAC.................................................................................................................................................................2621.00200000000002000000
..............................................................................................................................................................................................................................................TAGTTGC------------CTTCGTCACTGCGTTGAA.................................................2511.00100000000001000000
.................................................................................................................................................................................................................................................TTGC------------CTTCGTCACTGCGTTGAATAT---CACAGT.....................................3111.00100000010000000000
..TAGAACAGAAGCTAAAAAGCCC-...........................................................................................................................................................................................................................................................................................................2211.00101000000000000000
..................................................................................................................................................................................................................................................TGC------------CTTCGTCACTGCGTTGAATAT---CAC........................................2711.00100000000001000000
...............................................................................................................................................................................................................................................................................TGAATAT---CACAGTTATAAAATGAA------------------GAT.....2711.00100010000000000000
..............................................................................................................................................................................................................................................TAGTTGC------------CTTCGTCACTGCGTTGAATA...............................................2711.00100010000000000000
........................................................................................................................................................................................TGGTATATGACTAGTGGCTTCCTCA...................................................................................................................2531.00300000001000011000
.........................................................................TACCTTTATAGGAA-----AAACATGTGATGA...........................................................................................................................................................................................................................2721.00200000011000000000
..................................................................................................................................................................................................................................................TGC------------CTTCGTCACTGCGTTGAATAT---CACA.......................................2811.00100000010000000000
...............................................................................................................................................................................................................................................AGTTGC------------CTTCGTCACTGCGT.....................................................2011.00100000000001000000
..............................................................................................ACATGTGATGAT-----------------------------------TTGAGGCGAAAA...........................................................................................................................................................................2421.00200002000000000000
.................................................................................TAGGAA-----AAACATGTGATGAT-----------------------------------TTGAGG.................................................................................................................................................................................2621.00200000000001001000
...................................................................................................TGATGAT-----------------------------------TTGAGGCGAAAAATAAT......................................................................................................................................................................2421.00200000001000010000
...............................................................................................................................................................................................................................TCCCTGTGCATAAAGTAGTTGC------------C..................................................................2311.00100010000000000000
.........................................................................................................T-----------------------------------TTGAGGCGAAAAATAATTTTACCGTA.............................................................................................................................................................2721.00200000010001000000
..................................................................................................................................................................................................................................................TGC------------CTTCGTCACTGCGTTGAATAT---CA.........................................2611.00100000010000000000
..................................................................................................................................................................................................................................................TGC------------CTTCGTCACTGCGTTGAATAT---C..........................................2511.00100010000000000000
..............................................................................................................................................................................................................................................................................TTGAATAT---CACAGTTATAAAATGAA------------------GA......2711.00100000010000000000
............................................................................................................................................................................................................................TTCTCCCTGTGCATAAAGTAGTTGC------------CTTC...............................................................2911.00100010000000000000
...................................................................................................TGATGAT-----------------------------------TTGAGGCGAAAAATAATT.....................................................................................................................................................................2521.00200000002000000000
.................................................................................................................................................................................ATACCTTTGGTATATGACTAGTGGCT.........................................................................................................................2630.67200000000001010000
.........................................................................................................................................................................................................................TATTTCTCCCTGTGCATAAAG......................................................................................2130.67200002000000000000
...........................................................................................................................................................................................................TCCTCACTTTTGAATATTTCTCCCTG...............................................................................................2630.67200020000000000000
.............................................................................................................................................................................................TATGACTAGTGGCTTCCTCACTTTT..............................................................................................................2530.67200000000000020000
......................................................................................................................................................................................TTTGGTATATGACTAGTGGCTTCCTC....................................................................................................................2630.67200000001000001000
..................................................................................AGGAA-----AAACATGTGATGAT-----------------------------------TTGAGG.................................................................................................................................................................................2520.50100010000000000000
....................................................................................................................................................................................................................................................................CGTCACTGCGTTGAATAT---CACAGTTA...................................2620.50100000000001000000
............................................................................................AAACATGTGATGAT-----------------------------------TTGAGGCGAAAAA..........................................................................................................................................................................2720.50100010000000000000
...............................................................................TATAGGAA-----AAACATGTGATGAT-----------------------------------TTGAGG.................................................................................................................................................................................2820.50100000010000000000
.................................................................................................TGTGATGAT-----------------------------------TTGAGGCGAAAAATAA.......................................................................................................................................................................2520.50100000000000001000
....................................................TTCAAGTGCTTCCCAAAATATTACCT......................................................................................................................................................................................................................................................2620.50100000010000000000
......................................................................................A-----AAACATGTGATGAT-----------------------------------TTGAGGCGA..............................................................................................................................................................................2420.50100100000000000000
..............................................................................................ACATGTGATGAT-----------------------------------TTGAGGCGA..............................................................................................................................................................................2120.50101000000000000000
....................................................................................................GATGAT-----------------------------------TTGAGGCGAAAAATAATTT....................................................................................................................................................................2520.50100000010000000000
..............................................................................................................................................TGAGGCGAAAAATAATTTTACCGTA.............................................................................................................................................................2520.50100000000001000000
.........................................................................TACCTTTATAGGAA-----AAACATGTGA..............................................................................................................................................................................................................................2420.50100000010000000000
.................................................................................................TGTGATGAT-----------------------------------TTGAGG.................................................................................................................................................................................1520.50100000000001000000
.........................................................................................................................................................................AGTTTTTGATACCTTTGGTATATGA..................................................................................................................................2520.50100000010000000000
.................................................................................................TGTGATGAT-----------------------------------TTGAGGCGAAAA...........................................................................................................................................................................2120.50100000000000001000
...............................................................................................................................................................................TGATACCTTTGGTATATGACTAGTGGCTT........................................................................................................................2920.50100000000000010000
.....................................................TCAAGTGCTTCCCAAAATATTACCTT.....................................................................................................................................................................................................................................................2620.50100010000000000000
.................................................................................TAGGAA-----AAACATGTGATGAT-----------------------------------TTGAG..................................................................................................................................................................................2520.50100000010000000000
..............................................................................................ACATGTGATGAT-----------------------------------TTGAGGCG...............................................................................................................................................................................2020.50100100000000000000
.............................................................................................................................................................................................................................................................................................GTTATAAAATGAA------------------GA......1520.50100000010000000000
..............................................................................TTATAGGAA-----AAACATGTGATG............................................................................................................................................................................................................................2120.50100010000000000000
.....................................................................ATATTACCTTTATAGGAA-----AAACATGTGA..............................................................................................................................................................................................................................2820.50100000010000000000
........................................................................................................................................................................................TGGTATATGACTAGTGGCTTCCT.....................................................................................................................2330.33100000000000010000
.............................................................................................................................................................................................................CTCACTTTTGAATATTTCTCCCTGTGCA...........................................................................................2830.33100000010000000000
......................................................................................................................................................................................................TGGCTTCCTCACTTTTGAATATTTC.....................................................................................................2530.33100000010000000000
........................................................................................................................................................................................TGGTATATGACTAGTGGCTTCCTC....................................................................................................................2430.33100010000000000000
........................................................................................................................................................................................TGGTATATGACTAGTGGC..........................................................................................................................1830.33100000000001000000
...................................................................................................................................................................................................................TTTGAATATTTCTCCCTGTGCATAAAGT.....................................................................................2830.33100010000000000000
..................................................................................................................................................................................TACCTTTGGTATATGACTAGTGGCTT........................................................................................................................2630.33100000000000010000
..................................................................................................................................................................................................................TTTTGAATATTTCTCCCTGTGCA...........................................................................................2330.33100000010000000000
..................................................................................................................................................................................................................TTTTGAATATTTCTCCCTGTGCATA.........................................................................................2530.33100000001000000000
........................................................................................................................................................................................TGGTATATGACTAGTGGCTTCCTCACTTT...............................................................................................................2930.33100000010000000000
............................................................................................................................................................................................ATATGACTAGTGGCTTCCTCACTTT...............................................................................................................2530.33100000000000001000
..............................................................................................................................................................................................................TCACTTTTGAATATTTCTCCCTGTGC............................................................................................2630.33100000010000000000
..........................................................................................................................................................................................................................ATTTCTCCCTGTGCATA.........................................................................................1730.33100000010000000000
........................................................................................................................................................................................TGGTATATGACTAGTGGCTTCCTCACT.................................................................................................................2730.33100000000000010000
.......................................................................................................................................................................................TTGGTATATGACTAGTGGCTTCCTC....................................................................................................................2530.33100000000001000000
...............................................................................................................................................................................................................................................................................TGAATAT---CACAGTTA...................................1530.33100000000001000000
...........................................................................................................................................................................................TATATGACTAGTGGCTTCCTCACT.................................................................................................................2430.33100000010000000000
..............................................................................................................................................................................................................TCACTTTTGAATATTTCTCCCTGTGCA...........................................................................................2730.33100000010000000000
............................................................................................................................................................................................................................TTCTCCCTGTGCATA.........................................................................................1560.17100000001000000000
droSec2
TTTAGAACAGAAGCTAAAAAGCCCAAACCAGTTCCAGATTCTACAATGCAGGTTCAAGTGCTTCCCAAAATAATACCTTTATAGGAATGTAAAAACATGTGATGAT-----------------------------------TTGTGGCGAAAAATAATTTTACCGTACTAGTTTTTGATACCTTTGGTATATGACT-TTGGCTTCCTCACTTTTGAATATTTCTCCCTGTGCATAAAGTAGTCGC------------CTTCGTCACTGCGTTGAATAT---CACAGTTATAAAATGAA------------------AATTAAACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................TGTGATGAT-----------------------------------TTGTGGCGAAAAATA........................................................................................................................................................................2411.0011000
.........................................................................................................................................................................AGTTTTTGATACCTTTGGT........................................................................................................................................1911.0010010
TTTAGAACAGAAGCTAAAAAGCCCA...........................................................................................................................................................................................................................................................................................................2511.0011000
dm3
AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTTTAGTTTTTGATACCTTTGGTATATGACTATTGGTTTCCTCACTTTTGAATATTTCTCACTGTGCATAAAGTAGTCGC------------CTTCGTCACTGCATTGAATAC---CACAGTTATAAAATGAA------------------GATTAAACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................TGAATATTTCTCACTGTGCATAAAG......................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................GGTTTCCTCACTTTTGAATA.........................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................AGTTTTTGATACCTTTGGTAT......................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................CTTTGGTATATGACTATTGGT..........................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................................................................................................................................................................................TGCATAAAGTAGTCGC------------CTTCGTCACT.........................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................GTGCATAAAGTAGTCGC------------CTTC...............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................TTCCTCACTTTTGAATATTTCTCA..................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................TTGAATATTTCTCACTGTGCA...........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TGTGCATAAAGTAGTCGC------------CTTCGTCACT.........................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................TAC---CACAGTTATAAAATGAA------------------G.......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................................................................................................................................................................................................................ACTGCATTGAATAC---CACAGTT....................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEre2
ATCAAAAAAGAAGCTAATGACCCCCAACCAGTTCCATATTCTACAATGCAGGTACAAGGGCTTCCCAAAATATTACTTTTATACCAATATAAACAGAAGTGACGATCGACCCTCAATCACTCAAAAGTTCTGATATCACTTTTATGACTAAAAATTATTTTAC-----------------------------------------------TTTTG-------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................CCCAACCAGTTCCATATTCTACAATG....................................................................................................................................................................................................................................................................................2611.0011000000
droYak3
AT-----------------------------------------------------------------------------------------------------------------------------------------------------------------CGCTTTAATTTTGGCTACCTTTGATGTTT--CTATTATTATCCTCACTCTTGAATATTTTTTGCTGTGCATGAAGTG--CGCTTTCCTGTAGTGCTTCGTCACTACGTGGACTACTAGCGCAGTCATAAAATTAACTTTTATGAGAACTCGATGATTAAACSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droRho1
CT-AGAGAAGAACCTGCAGAGCCCCTACCAGTTCCAGATTCTACCGTACAGGT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads

Generated: 05/19/2015 at 12:13 PM