ID:

dsi_9115

 Coordinate:

3l:16269680-16269975 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

ACGTCAAGTACCACGCGGACTTTGAGAAGGCCAAGGGCAAGTTTACACAGGTCAGTGCAGCAAAAGTTGAGAGAAGCTCAATTGACCAAAGATATTACTACTTCTGATGGGAGTTTGCTGGCTAATTAGGTTTAATTTACTTGCGCGATAGATAGATAGTTCTTTGAAATATTCAAATAGTCAAGTTTTATTAGTTAAATTTGTATGTTTTGGCATACTTATTTAACTATATATGACTAAAGCGCGGCCCTTGTGAAGTTCAGTTTGAGATAATGCTTGATATATGTTAAGTTCCATCCGTTCATTTGGTGTGTGCCCTTACCTAAATTGCTTTTGCATTCGACAGGTGGCCGATGACCCGGAAACGCTGCGGATCAAACAGAACACGAAGCACAT
**************************************************(((((((((((((.(((((((.....)))))))...((((((.(((((((((..((.((.((((.....((((.....))))......)))).))))..)).))).))))))))))...........((((((.....((((((((((((..((((((....))))))..))))))))).)))))))))..(((((..((..(((((........((.(((...(((((((....)))))))...))))))))))..))..)))))...........))))...)))))).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
.......................................................................................................................................................................................................................................................................................................................................................................................CAAACAGAACACGAAGCAC.. 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................................................GATGACCCGGAAACGCTGCGGA...................... 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............CCGACTTTGAAAAGGCCAAGG........................................................................................................................................................................................................................................................................................................................................................................ 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................CAAGGGCAAGTTTACACAG.......................................................................................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TTTACACAGGTGGCCGATGACCCGGAA................................ 27 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................AACGCTGCGGATCAAACAGA............. 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................................................................................................................................GCGGATCAAACAGAACACGAAGC.... 23 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................................AGGTCAGTGCAGCAAAAGTT........................................................................................................................................................................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.......GTACCACGCGGACTTTGAGA................................................................................................................................................................................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................................TTTACACAGGTGGCCGATGACCCGGA................................. 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.............CGCGGACTTTGAGAAGGCCAAGGG....................................................................................................................................................................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................................................................................................................................CGGATCAAACAGAACACGAAGCAC.. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................TACTTCAGATGGGACTTTGATG.................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0
.........................................TTTACACAGGTCAGT.................................................................................................................................................................................................................................................................................................................................................... 15 0 4 0.25 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................ATAGCTAGTTCTCTGAAA................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 1 0 0
.................................................................................................CTATTTCTGAGGGGAGT.......................................................................................................................................................................................................................................................................................... 17 2 5 0.20 1 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................GATTGAGATAGTGCTTGAT................................................................................................................... 19 2 8 0.13 1 0 0 0 0 1 0 0 0 0 0
.......................................................TGCAGCAATAGTTGA...................................................................................................................................................................................................................................................................................................................................... 15 1 15 0.07 1 0 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................................................................................................................................................................................................AACCGTGTGGATCAAACA............... 18 3 20 0.05 1 0 0 0 1 0 0 0 0 0 0
...............CGGACTGTGAGGAGGC............................................................................................................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................................................................TGCCTAAAGAGCGTCCCT................................................................................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................GCCCTAGTGAAGTTCT...................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TGCAGTTCATGGTGCGCCTGAAACTCTTCCGGTTCCCGTTCAAATGTGTCCAGTCACGTCGTTTTCAACTCTCTTCGAGTTAACTGGTTTCTATAATGATGAAGACTACCCTCAAACGACCGATTAATCCAAATTAAATGAACGCGCTATCTATCTATCAAGAAACTTTATAAGTTTATCAGTTCAAAATAATCAATTTAAACATACAAAACCGTATGAATAAATTGATATATACTGATTTCGCGCCGGGAACACTTCAAGTCAAACTCTATTACGAACTATATACAATTCAAGGTAGGCAAGTAAACCACACACGGGAATGGATTTAACGAAAACGTAAGCTGTCCACCGGCTACTGGGCCTTTGCGACGCCTAGTTTGTCTTGTGCTTCGTGTA
**************************************************(((((((((((((.(((((((.....)))))))...((((((.(((((((((..((.((.((((.....((((.....))))......)))).))))..)).))).))))))))))...........((((((.....((((((((((((..((((((....))))))..))))))))).)))))))))..(((((..((..(((((........((.(((...(((((((....)))))))...))))))))))..))..)))))...........))))...)))))).)))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 GSM343915
embryo
...........................................................................................................................................................................................................................................................................................................................GGGAATGGATGTAAC.................................................................. 15 1 5 5.60 28 28 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................GGGAATGGATGTAACG................................................................. 16 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................ACCACCGGGTACTGGGCCTTA............................... 21 3 2 0.50 1 0 1 0 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................CACGGGAAGGCAGTTAACGAAA.............................................................. 22 3 3 0.33 1 1 0 0 0 0 0 0 0
.........................................................................TTCGAATTAAGTGGTTTCT................................................................................................................................................................................................................................................................................................................ 19 2 3 0.33 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................................................................................................................ATGGATTTATCGAAAGC............................................................ 17 2 20 0.30 6 1 0 1 4 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................AGGGAATGGATTTAA................................................................... 15 1 14 0.29 4 2 0 0 0 2 0 0 0
...............................................................................................................................................................................................................................................................................................................................ATGGATTTATCGAAA.............................................................. 15 1 16 0.25 4 0 0 1 3 0 0 0 0
...................................................................ACTCCCTTAGAGTTAACT....................................................................................................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CGCACGGGAATGGATGT..................................................................... 17 2 6 0.17 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................ACGGGAAGGCAGTTAACGAAA.............................................................. 21 3 6 0.17 1 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................AAGGGAATGGATGTAACCAA............................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0 0
.........................................................................................................................................................................................................................................................................................................................ACGGGAAGGCATTTAAGGAAA.............................................................. 21 3 8 0.13 1 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................................................................................................................CGGGAAGGCATTTAAGGAAA.............................................................. 20 3 17 0.12 2 0 0 0 0 0 1 1 0
.........................................................................................................................................................................................................................................................................................................................ACGGGAATGTACTTAAC.................................................................. 17 2 9 0.11 1 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................................CACAGAAGGGAATGGAT....................................................................... 17 2 10 0.10 1 0 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................ACGGGAAGGCAGTTAACGAA............................................................... 20 3 10 0.10 1 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................................................................................................................................TGGATTTATCGAAAGC............................................................ 16 2 20 0.10 2 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................GGGAACGGATTTAAC.................................................................. 15 1 14 0.07 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................CTATTAAGAAACTTTA.................................................................................................................................................................................................................................. 16 1 17 0.06 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................................TGGATTTATCGAAAGCG........................................................... 17 2 18 0.06 1 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................CGGGAATGGATATCA................................................................... 15 2 20 0.05 1 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................CACTCGGAAATGGATT...................................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0
.............................CGGTTCACGTTCAAA................................................................................................................................................................................................................................................................................................................................................................ 15 1 20 0.05 1 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................GAATGGATGTAACGAG............................................................... 16 2 20 0.05 1 1 0 0 0 0 0 0 0

Generated: 04/24/2015 at 03:57 AM