dsi_9079

AAAACTGTTCTGGGGAATCGGAATCGCCCGAAAAGGAATGTGAAGACAAGGTTGTTGAAAAGGTTGAAGAAGAGAAGGGTGAAAACTCAAATAAAAAGGCTGAGGAACAAAAAGAAGAAACGGAAAAACTGGAAAAATCGAGCATAGA ************************************************..........................((((....))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553485 Chicharo_3 day-old ovaries	M053 female body	M023 head	M025 embryo	SRR902009 testis	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries
..AACTGTTCTGGGGAATCGGAATC...........................................................................................................................	23	0	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0
...........................................................................................TAAAAAGGCTGAGGAATAATAA...................................	22	2	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.............................................ACAAGGTTGTTGAAAAGGTTGAAGA..............................................................................	25	0	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................ATAAAAAGGCTGAGGAACAAAAA...................................	23	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................GAAAAGGTTGAAGAAGAGAAGGG.....................................................................	23	0	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................CTCAAATAAAAAGGCTGAGGAACAA......................................	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....TGTTCTGGGGAATCGGAATCGCCCGAAA...................................................................................................................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................TAGAAAGGCTGAGGAACAAAAAGAAGAAAA...........................	30	2	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
................................AAGGAATGTGAAGAC.....................................................................................................	15	0	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0
...............................................AAGGTTGTTGAAAAGGTTGAAGAAGA...........................................................................	26	0	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
............................................................................................AAAAAGGCTGAGGAACAAAAA...................................	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACTGGAAAAATCGAGCATAGA	21	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................TAAAAAGGCTGAGGAACAAAAAGAAGAA.............................	28	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
....................................................................................................................GAAACGGAAAAACTGGAAAA............	20	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................AAAGGCTGAGGAACAAAAAG..................................	20	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................AAAGGCTGAGGAACAAAAA...................................	19	0	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
......................................TGTGAAGACAAGGTTGTTGAAAAGGT....................................................................................	26	0	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0
............................................................................................AAAAAGGCTGAGGAACAAA.....................................	19	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................TAAAAAGGCTGAGGAACAAAAAGAAGAAAA...........................	30	1	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................AAAAGGCTGAGGAACAAAAA...................................	20	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.........................................................................................AATAAAAAGGCTGAGGAAC........................................	19	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..........................................................................................ATAAAAAGGCTGAGGAACAAAAAGA.................................	25	0	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................AACGGAAAAACTGGAAAAATCGAGC.....	25	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................AAGAAGAAACGGAAAAA....................	17	0	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................TAAAAGGCTGAGGAACAAA.....................................	19	1	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................ACTGGAAAAATCGAG......	15	0	2	0.50	1	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................GAAGAACCGGACAAACTGG................	19	2	5	0.20	1	0	0	0	0	0	0	0	0	0	1	0
.....................................................GTTGAAAAGGTTGAAGACA............................................................................	19	2	6	0.17	1	0	0	0	0	0	0	0	1	0	0	0
...............................................................................TGAACATTCAAATATAAAGGC................................................	21	3	8	0.13	1	1	0	0	0	0	0	0	0	0	0	0
......................................................................AGGGAAGGGTGAAAA...............................................................	15	1	19	0.11	2	0	0	0	0	0	0	0	2	0	0	0
...........................................................AAGGATGAAGAAGAAAAGGGC....................................................................	21	3	11	0.09	1	0	0	0	0	0	0	0	1	0	0	0
....................................................TGTTGAAAAGAATGAAGAACA...........................................................................	21	3	11	0.09	1	0	0	0	0	0	0	0	0	1	0	0
....................................................................GAATAGAAGGGTGAA.................................................................	15	1	12	0.08	1	0	0	0	0	0	0	0	0	1	0	0
..........................................................AGAGGTTGAAGAAGA...........................................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	0	1	0	0

TTTTGACAAGACCCCTTAGCCTTAGCGGGCTTTTCCTTACACTTCTGTTCCAACAACTTTTCCAACTTCTTCTCTTCCCACTTTTGAGTTTATTTTTCCGACTCCTTGTTTTTCTTCTTTGCCTTTTTGACCTTTTTAGCTCGTATCT ************************************************..........................((((....))))..........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
..........................................TTCTGTTCCAACAACTTTTCCAACT.................................................................................	25	0	1	1.00	1	1	0
..................GCCTTAATGGGCTGTTCCTT..............................................................................................................	20	3	3	0.33	1	0	1
........................................................................................................CTTGTTTTTCTTCTTTGGTTTGT.....................	23	3	13	0.08	1	0	1

Species	Coordinate	ID	Alignment
droSim2	2l:203659-203806 -	dsi_9079	AAAACT---GTTCTGG-----------------GGAATC---GGAATCGCCCGAAAAGGAA-----------------TGTGAAGA------CAAGGTTGTTGAAAA------GGTTGAAGAAGAGAAGGGTGAAAACTCAAATA------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAAGAAGAAACGGAAAAACTG------------GAAA---------------AAT---CGAGCATAGA----
droSec2	scaffold_14:215584-215731 -		AAAACT---GTTCTGG-----------------GGAATC---GGAATCGCCCGAAAAGGGA-----------------TGTGAAGA------CAAGGTTGTTGAAAA------GGTTGAAGAAGAGAAGGGTGAAAACTCAAATA------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAAGAAGAAACGGAAAAACTG------------GAAA---------------AAT---CGAGCCTAGA----
dm3	chr2L:217507-217654 -		AAAACT---GTTCTGG-----------------GGATTC---GGAATCGCCCGAAAAGGAA-----------------TGTGAAGA------CAAGGTTGTTGAAAA------GGTTGAGGAAGAGAAGGGTGAAAACTCATATG------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAAGAAGAAACGGAAAAACTG------------GAAA---------------AAT---CGAGTATAGA----
droEre2	scaffold_4929:263064-263217 -		AAAACT---GTTCTGG-----------------GGAATC---GAAATCGCCCGAAAAGGAA-----------------TGTGAAGA------CAAGGTTGTTGAAAA------GGCTGATGAAGAGAAAGAAGAAAAATCTAAA------------------------T------------------TAAATGA------------------------------AAAGGCTGAGGAACAAACAGAAGAAAAAGAAAAGCTA------------CAAA---------------AAT---CGGTCATTGA----
droYak3	2L:209941-210088 -		AAAAAT---GTTCTGG-----------------GGAATT---GAAACCGCCCGAAAAGGAA-----------------TCTGAAGA------CAAGGTTGTTGAAAA------GTCTGATGAAGAGAAGGGTGAAAAAACAAATG------------------------------------------------A------------------------------AAAGTCTGAGGAACAGAAAGAGGAAAAAGAAAAGGTG------------CAAA---------------AAC---CACTCATAGA----
droEug1	scf7180000409461:599504-599642 +		GTAAAT---CTTCTGA-----------------AGATCC---GGAATTAACCGAAAAGGAG-----------------TCTGAAGA------TAAGGCTGT---GAA------GGGTGAAGAAAAGAA------AGATTCAAAAG------------------------------------------------A------------------------------GGAGTCTAAGGAGCAAACCGAAGATAGGGAAATGGAG------------AAAA---------------AAT---CGGTCGTAGA----
droBia1	scf7180000301547:41375-41522 +		AAAAGT---CTACCGA-----------------AGACTT---GGAATCCTCCGAAAAGGAA-----------------GCTGAAGA------TAAGGCTATTGTAAA------GACTGATGAAGAGAAAGCAGAAGAATCAAAAG------------------------------------------------A------------------------------AGAGTTAAAGGAGCAAACAGAAGATAAGGAAAAGGAT------------CCTA---------------AAT---CAATTCCAGA----
droTak1	scf7180000413017:321002-321152 +		AAAAAT---CTGCTGA-----------------AGATTC---GGAATCCCCCGAAAAGGAA-----------------TCGGAAGATACGGCAAA---GACTGCCAA------GACTGACGAAGAGAAAGCAGAAGAATCAAAAG------------------------------------------------A------------------------------AGAGTCCAAGGAGCAAACTGAAGACAAGGAAAACGAG------------AAGA---------------AAT---CACCCGCAGA----
droEle1	scf7180000490454:156742-156892 +		ACAAAT---CCACTGA-----------------AGATTC---GGAATCTTCTGAAAAGGAA-----------------TCTGAATA------TAAGGCTGCTGCAAA------GACTGATGAAGAGAAAGCAGAAGAGCCAAAAG---------------------AAGT------------------------------------------------------GTCTTCTAAGGAGCAATCAGAAGATGTGGAAAAAGAT------------ATAA---------------AAT---CTTCTACTGA----
droRho1	scf7180000779252:243258-243402 -		AAAAAT---CCACTAA-----------------AGATTC---GGAATTTTCCGAAAAGGAA-----------------TCTGAAAA------TAAGGCTGCTGTAAA------GACTGATGAAGAAAAAGCTGAAGAATTAAAAG------------------------------------------------A------------------------------ACCGTCTAAGAAGCAATCAGAAGATATGGAAATAGAG------------ATGA---------------AAC---CT---ACCGA----
droFic1	scf7180000453904:483036-483195 -		ACAAGT---CTGCAGA-----------------GGTGTC---GGAATCCACCGAAAAGCAG-----------------TCTGAAGA------GAAGGCTGTTGTTAA------GACTGATGATGAGAAAGCAGAAGAATCAAAAG------------------------------------------------A------------------------------AGAGTCTAAGGAGCAGGCGGAAGACAAGGATAAGGATGCGGATACGGAGAAGA---------------AGT---CGGTTGCCGA----
droKik1	scf7180000302401:523943-524081 -		AGACGGAGTCAACTGAGAAATC-----------GGA------GGAATCCCCGGAAAAGGAAGCCGAAGC--------------AGA------CAAGGGTGCGACAAA------GACTGACGAAGAGAAGCCAGAAGAA---------------------GAATCTAAAG------------------------AAGACTCCAAGGAG-----------------------------GCAG-------------AC------------------A------------------CAA---AGGGCAAGGA----
droAna3	scaffold_12943:4176338-4176491 +		ATAAAT---CTCCCGA-----------------GAAAGC---AGAGTCCGACGCCAAGGAG-----------------TCTGAGGA------GAAGACACTTCCAAA------GCCCGAGGAGGAAAAGCCAGAAGAGTCCAAGG------------------------------------------------A------------------------------GGAATCCAAGGAGAAGTCCGAGGACAGCGACAAGGAG---------GAGAAGA---------------AGCCATCTGCTGAAGC----
droBip1	scf7180000395973:398416-398571 +		AGAAGA---CTCCAGA-----------------GAAGTC---GGAACCCGATACCAAGGAA-----------------TCTGAGGA------TAAGGCAGTTGCCAA------GCCAGAGGATGAAAAGCCAGAAGAGTCCAAGG------------------------------------------------A------------------------------GGAATCCAAGGAGAAGTCCGAGGACATCGACAAGGAG---------GAGAAGA---------------AGGCAACTGCTGAAGT--TG
dp5	4_group1:4393750-4393906 +		AGAAGGCGAAATCTCCTGCCGT-----------GGAAT------CATCCCCAGAGAAGGAGCTCTCCACCGAAAAGGA--AGAAGA------------------AAC------CTCTGCTGAAGAGCCAACAGAAGAC---------------------AAAACAGA---------------------------------------------------------TAACAAAGACAAGGAAAATGAAAATGGGGAGAAGAAG------------GAGA---------------CGC---CTGCCGAAGA----
droPer2	scaffold_5:816213-816375 -		AGAAGGCGAAATCTCCTGCCGT-----------GGAAT------CATCTCCAGAGAAGGAGCTCTCCTCCGAAAAGGA--AGAAGA------------------AAC------CTCTGCTGAAGAGCCAACAGAAGAC---------------------AAAACCGATAACAAAGACA---------------A------------------------------GGAAA---ATGA---AAATGAGGAGAAGAAGGAG---------------AAGG---------------AGACGCCTGCCGAAGA----
droWil2	scf2_1100000004577:97336-97499 -		AAGGCA---GTCCTGA-----------------GAAGG------------ATGAAAAGGCA-----------------ACCACAGA------TAAGGCTGATGTAGA------AGAATCTCCGGAGGAAACTAAAAAGTCCGCCG------------------------------------------------T---------AACAGCAGATGACACAGAGGAGGAAAAAGAGAAGAAACTCGACGAAAGTGAGGAA---------------AAGA---------------AAACTCCAACCGAAGAGATG
droVir3	scaffold_12963:8885385-8885584 +		GAGCCC---GCC--AA---G--TTGACAGTTGCCGAGGAAAAGGAATCTGCCGAAGCATCG-----------------GAAGAGGA---AGCGAC---AGCTGTCAAAGCAGAAGCTGCGAACGAGAAAAGCGACGAG---------------------ATAGTTGAGACCGGCGCCAAGGAAAAGCCAGAGGC------------------------------GGCAGATAAGGAACCAGCTGCAGCAGCAGCCGAAAGT------------G--A-GTCC------AAGAAAA---TCGACGCGGA----
droMoj3	scaffold_6500:2445020-2445167 -		ACGTTG---CCACTGC-----------------CGAAGC---TGAGAAACCAGCTGAGAGC-----------------CTCAAGGA------CGAAGCAGCAGAAAA------AGACGATGAGAAGAAGTCAAGTGAT---------------------------------------------------------------------------------------AAGCAAGAGGA------------AGACGACTCGAAG------ATGGAAACAGAATCCATAAAGT---CGACTGCTGCCGAGGA----
droGri2	scaffold_15252:12902281-12902449 -		CAAGCG---AGTCCAG------CGAA--GCAGCCGCTAA---AGAAACGCCCGAAAAGGAG-----------------GCGGAGGC------AACAACTGATGCAAC------AGTTGCAAC---AACAGCAG---------CAACAGTTGTTGTTGACACAGCTGAAACTGATGCCGAAG------------C------------------------------CGAGCCAAAAATAGAAACTGCTGCTGAAG---------------------------------------CAA---CAACAACAGA----

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAAACT---GTTCTGG-----------------GGAATC---GGAATCGCCCGAAAAGGAA-----------------TGTGAAGA------CAAGGTTGTTGAAAA------GGTTGAAGAAGAGAAGGGTGAAAACTCAAATA------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAAGAAGAAACGGAAAAACTG------------GAAA---------------AAT---CGAGCATAGA----	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..AACT---GTTCTGG-----------------GGAATC---GGAATC........................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................A------CAAGGTTGTTGAAAA------GGTTGAAGA..............................................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................ATA------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAA.....................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GAAAA------GGTTGAAGAAGAGAAGGG.....................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................CTCAAATA------------------------------------------------A------------------------------AAAGGCTGAGGAACAA........................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....T---GTTCTGG-----------------GGAATC---GGAATCGCCCGAAA................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................AAGGAA-----------------TGTGAAGA------C...........................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................AAGGTTGTTGAAAA------GGTTGAAGAAGA...........................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................A------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAA.....................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ACTG------------GAAA---------------AAT---CGAGCATAGA----	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TA------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAAGAAGAA...............................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................GAAACGGAAAAACTG------------GAAA---------------A...................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AAAGGCTGAGGAACAAAAAG....................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................AAAGGCTGAGGAACAAAAA.....................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TGTGAAGA------CAAGGTTGTTGAAAA------GGT....................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................A------------------------------------------------A------------------------------AAAGGCTGAGGAACAAA.......................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TA------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAAGAAGAAAA.............................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................A------------------------------AAAGGCTGAGGAACAAAAA.....................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................AATA------------------------------------------------A------------------------------AAAGGCTGAGGAAC..........................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................ATA------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAAGA...................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................AACGGAAAAACTG------------GAAA---------------AAT---CGAGC.........	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AAGAAGAAACGGAAAAA......................................................	17	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................ACTG------------GAAA---------------AAT---CGAG..........	15	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................GTTGAAAA------GGTTGAAGACA............................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0

droSec2

AAAACT---GTTCTGG-----------------GGAATC---GGAATCGCCCGAAAAGGGA-----------------TGTGAAGA------CAAGGTTGTTGAAAA------GGTTGAAGAAGAGAAGGGTGAAAACTCAAATA------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAAGAAGAAACGGAAAAACTG------------GAAA---------------AAT---CGAGCCTAGA----	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................AGAAGAAACGGAAAAACT....................................................	18	1	1.00	1	0	0	1	0
.............TGG-----------------GGAATC---GGAATCGCCC....................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.................................................................................GAAGA------CAAGGTTGTTGAAAA------GGT....................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.......................................................AAGGGA-----------------TGTGAAGA------CAAGGTTGT...................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
..................................................................................................................GTTGAAGAAGAGAAGGGTGA..................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
AAAACT---GTTCTGG-----------------GGAATC---GGA...........................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0
....................................................................................GA------CAAGGTTGTTGAAAA------GGTT...................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
............................................................................................CAAGGTTGTTGAAAA------GGTTGAAGA..............................................................................................................................................................................................	24	1	1.00	1	0	0	1	0

dm3

AAAACT---GTTCTGG-----------------GGATTC---GGAATCGCCCGAAAAGGAA-----------------TGTGAAGA------CAAGGTTGTTGAAAA------GGTTGAGGAAGAGAAGGGTGAAAACTCATATG------------------------------------------------A------------------------------AAAGGCTGAGGAACAAAAAGAAGAAACGGAAAAACTG------------GAAA---------------AAT---CGAGTATAGA----	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................AGGGTGAAAACTCATATG------------------------------------------------A------------------------------AAA.....................................................................................	22	1	68.00	68	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	32	34	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................AGGGTGAAAACTCATATG------------------------------------------------A------------------------------AAAG....................................................................................	23	1	58.00	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	27	20	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AGAAGGGTGAAAACTCATATG------------------------------------------------A------------------------------AAA.....................................................................................	25	1	57.00	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	18	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AGAAGGGTGAAAACTCATATG------------------------------------------------A------------------------------........................................................................................	22	1	44.00	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	28	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................AGGGTGAAAACTCATATG------------------------------------------------A------------------------------AAAGGCTGA...............................................................................	28	1	39.00	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	25	5	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................GGTGAAAACTCATATG------------------------------------------------A------------------------------AAAG....................................................................................	21	1	35.00	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	13	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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....................................................GAAAAGGAA-----------------TGTGAAGA------CA..........................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TTGAAAA------GGTTGAGGAAGAGA.........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................GAGAAGGGTGAAAACTCATATG------------------------------------------------A------------------------------A.......................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................AAA------GGTTGAGGAAGAGAAGG......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droEre2

AAAACT---GTTCTGG-----------------GGAATC---GAAATCGCCCGAAAAGGAA-----------------TGTGAAGA------CAAGGTTGTTGAAAA------GGCTGATGAAGAGAAAGAAGAAAAATCTAAA------------------------T------------------TAAATGA------------------------------AAAGGCTGAGGAACAAACAGAAGAAAAAGAAAAGCTA------------CAAA---------------AAT---CGGTCATTGA----	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................CGCCCGAAAAGGAA-----------------TGTGAAGA------C...........................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	3
.....................................................................................................TGAAAA------GGCTGATGAAGAGAAAGA.....................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0
....................................ATC---GAAATCGCCCGAAAAGGA............................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AGAAGAAAAAGAAAAGCTA------------CAAA---------------A...................	24	1	1.00	1	0	0	0	0	1	0	0
....................................................................................GA------CAAGGTTGTTGAAAA------G......................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................AA------------------------T------------------TAAATGA------------------------------AAAGGCTGAGGAAC..........................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................GTGAAGA------CAAGGTTGTTGAAAA------GGC....................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.............................................ATCGCCCGAAAAGGAA-----------------TGTGAAGA------CA..........................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................ATCTAAA------------------------T------------------TAAATGA------------------------------AAAGGCTGAGG.............................................................................	26	1	1.00	1	0	1	0	0	0	0	0
............CTGG-----------------GGAATC---GAAATCGCCC....................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................ACAAACAGAAGAAAAAGAAAAGCT....................................................	24	1	1.00	1	0	0	0	0	1	0	0

droYak3

AAAAAT---GTTCTGG-----------------GGAATT---GAAACCGCCCGAAAAGGAA-----------------TCTGAAGA------CAAGGTTGTTGAAAA------GTCTGATGAAGAGAAGGGTGAAAAAACAAATG------------------------------------------------A------------------------------AAAGTCTGAGGAACAGAAAGAGGAAAAAGAAAAGGTG------------CAAA---------------AAC---CACTCATAGA----	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................GA------CAAGGTTGTTGAAAA------GTCTGATGAAGA...........................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................AAAAACAAATG------------------------------------------------A------------------------------AAAGTCTGAGGAA...........................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................GGAACAGAAAGAGGAAAAAGA..........................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................AAGTCTGAGGAACAGAAAGAGGA................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................TGAAAA------GTCTGATGAAGAGAAGGGT....................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................CAAGGTTGTTGAAAA------GTC....................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................AAAAACAAATG------------------------------------------------A------------------------------AAAGTCTGA...............................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................GATGAAGAGAAGGGTGAAAAAACAAATG------------------------------------------------.......................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEug1

GTAAAT---CTTCTGA-----------------AGATCC---GGAATTAACCGAAAAGGAG-----------------TCTGAAGA------TAAGGCTGT---GAA------GGGTGAAGAAAAGAA------AGATTCAAAAG------------------------------------------------A------------------------------GGAGTCTAAGGAGCAAACCGAAGATAGGGAAATGGAG------------AAAA---------------AAT---CGGTCGTAGA----	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAAAGT---CTACCGA-----------------AGACTT---GGAATCCTCCGAAAAGGAA-----------------GCTGAAGA------TAAGGCTATTGTAAA------GACTGATGAAGAGAAAGCAGAAGAATCAAAAG------------------------------------------------A------------------------------AGAGTTAAAGGAGCAAACAGAAGATAAGGAAAAGGAT------------CCTA---------------AAT---CAATTCCAGA----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAAAAT---CTGCTGA-----------------AGATTC---GGAATCCCCCGAAAAGGAA-----------------TCGGAAGATACGGCAAA---GACTGCCAA------GACTGACGAAGAGAAAGCAGAAGAATCAAAAG------------------------------------------------A------------------------------AGAGTCCAAGGAGCAAACTGAAGACAAGGAAAACGAG------------AAGA---------------AAT---CACCCGCAGA----	Size	Hit Count	Total Norm	Total
No Reads

droEle1

ACAAAT---CCACTGA-----------------AGATTC---GGAATCTTCTGAAAAGGAA-----------------TCTGAATA------TAAGGCTGCTGCAAA------GACTGATGAAGAGAAAGCAGAAGAGCCAAAAG---------------------AAGT------------------------------------------------------GTCTTCTAAGGAGCAATCAGAAGATGTGGAAAAAGAT------------ATAA---------------AAT---CTTCTACTGA----	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAAAT---CCACTAA-----------------AGATTC---GGAATTTTCCGAAAAGGAA-----------------TCTGAAAA------TAAGGCTGCTGTAAA------GACTGATGAAGAAAAAGCTGAAGAATTAAAAG------------------------------------------------A------------------------------ACCGTCTAAGAAGCAATCAGAAGATATGGAAATAGAG------------ATGA---------------AAC---CT---ACCGA----	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACAAGT---CTGCAGA-----------------GGTGTC---GGAATCCACCGAAAAGCAG-----------------TCTGAAGA------GAAGGCTGTTGTTAA------GACTGATGATGAGAAAGCAGAAGAATCAAAAG------------------------------------------------A------------------------------AGAGTCTAAGGAGCAGGCGGAAGACAAGGATAAGGATGCGGATACGGAGAAGA---------------AGT---CGGTTGCCGA----	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGACGGAGTCAACTGAGAAATC-----------GGA------GGAATCCCCGGAAAAGGAAGCCGAAGC--------------AGA------CAAGGGTGCGACAAA------GACTGACGAAGAGAAGCCAGAAGAA---------------------GAATCTAAAG------------------------AAGACTCCAAGGAG-----------------------------GCAG-------------AC------------------A------------------CAA---AGGGCAAGGA----	Size	Hit Count	Total Norm	Total
No Reads

droAna3

ATAAAT---CTCCCGA-----------------GAAAGC---AGAGTCCGACGCCAAGGAG-----------------TCTGAGGA------GAAGACACTTCCAAA------GCCCGAGGAGGAAAAGCCAGAAGAGTCCAAGG------------------------------------------------A------------------------------GGAATCCAAGGAGAAGTCCGAGGACAGCGACAAGGAG---------GAGAAGA---------------AGCCATCTGCTGAAGC----	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................................................................................................................................................GACAGCGACAAGGAG---------GAGAAGA---------------....................	22	1	2.00	2	1	0	0	0	1	0
.............................................GTCCGACGCCAAGGAG-----------------TCTGAGGA------............................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
................................................................................................ACACTTCCAAA------GCCCGAGGAG.............................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................ACAAGGAG---------GAGAAGA---------------AGCCATCT............	23	1	1.00	1	0	0	1	0	0	0
...........................................GAGTCCGACGCCAAGGAG-----------------TCTG......................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................GGAGAAGTCCGAGGACAGCGAC.........................................................	22	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................AGAAGAGTCCAAGG------------------------------------------------A------------------------------GGAAT...................................................................................	20	1	1.00	1	0	0	0	0	0	1
............................................AGTCCGACGCCAAGGAG-----------------TCTGAGG...................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................GTCCAAGG------------------------------------------------A------------------------------GGAATCCAAGG.............................................................................	20	1	1.00	1	0	0	0	0	1	0
................................................CGACGCCAAGGAG-----------------TCTGAGGA------............................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................ACAAGGAG---------GAGAAGA---------------AGCCA...............	20	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................ACAGCGACAAGGAG---------GAGAAGA---------------....................	21	1	1.00	1	0	1	0	0	0	0
....AT---CTCCCGA-----------------GAAAGC---AGAGTCCGAC....................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................AAGGAG---------GAGAAGA---------------AGCCATCTGCTGAA......	27	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................CCGAGGACAGCGACAAGGAG---------GAG.......................................	23	1	1.00	1	1	0	0	0	0	0
............................................AGTCCGACGCCAAGGAG-----------------TC........................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0

droBip1

AGAAGA---CTCCAGA-----------------GAAGTC---GGAACCCGATACCAAGGAA-----------------TCTGAGGA------TAAGGCAGTTGCCAA------GCCAGAGGATGAAAAGCCAGAAGAGTCCAAGG------------------------------------------------A------------------------------GGAATCCAAGGAGAAGTCCGAGGACATCGACAAGGAG---------GAGAAGA---------------AGGCAACTGCTGAAGT--TG	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGAAGGCGAAATCTCCTGCCGT-----------GGAAT------CATCCCCAGAGAAGGAGCTCTCCACCGAAAAGGA--AGAAGA------------------AAC------CTCTGCTGAAGAGCCAACAGAAGAC---------------------AAAACAGA---------------------------------------------------------TAACAAAGACAAGGAAAATGAAAATGGGGAGAAGAAG------------GAGA---------------CGC---CTGCCGAAGA----	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................AT------CATCCCCAGAGAAGGAGCTCT.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................ACCGAAAAGGA--AGAAGA------------------AAC------CTCTGCT................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................GA---------------------------------------------------------TAACAAAGACAAGGAAA.......................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
AGAAGGCGAAATCTCCTGCCGT-----------GGAAT------C...........................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................AATGAAAATGGGGAGAAGAAG------------GA.....................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................GACAAGGAAAATGAAAATGG.............................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.GAAGGCGAAATCTCCTGCCGT-----------G......................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................A--AGAAGA------------------AAC------CTCTGCTGA..............................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGAAGGCGAAATCTCCTGCCGT-----------GGAAT------CATCTCCAGAGAAGGAGCTCTCCTCCGAAAAGGA--AGAAGA------------------AAC------CTCTGCTGAAGAGCCAACAGAAGAC---------------------AAAACCGATAACAAAGACA---------------A------------------------------GGAAA---ATGA---AAATGAGGAGAAGAAGGAG---------------AAGG---------------AGACGCCTGCCGAAGA----	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................CCAGAGAAGGAGCTCTCCTCC..................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................GAAGAAGGAG---------------AAGG---------------AGACGC..............	20	1	1.00	1	0	0	0	0	0	1
................................................................................................................................................................................................................................................AATGAGGAGAAGAAGGAG---------------.......................................	18	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................AAAGACA---------------A------------------------------GGAAA---ATGA---AAATGAGG.................................................................	25	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................................................................................................ATGAGGAGAAGAAGGAG---------------AAGG---------------A...................	22	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................AGGAGAAGAAGGAG---------------AAGG---------------AGACGCCTG...........	27	1	1.00	1	0	1	0	0	0	0
...................................................AGAGAAGGAGCTCTCCTCCGAAAAGGA--........................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0

droWil2

AAGGCA---GTCCTGA-----------------GAAGG------------ATGAAAAGGCA-----------------ACCACAGA------TAAGGCTGATGTAGA------AGAATCTCCGGAGGAAACTAAAAAGTCCGCCG------------------------------------------------T---------AACAGCAGATGACACAGAGGAGGAAAAAGAGAAGAAACTCGACGAAAGTGAGGAA---------------AAGA---------------AAACTCCAACCGAAGAGATG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................AAGGCTGATGTAGA------AGAATCTCCGGAGGA........................................................................................................................................................................................	29	1	2.00	2	2	0	0	0	0
....................................................................................GA------TAAGGCTGATGTAGA------AGAAT..................................................................................................................................................................................................	22	1	2.00	2	0	0	0	1	1
..................................................................................................TGATGTAGA------AGAATCTCCGGAGGA........................................................................................................................................................................................	24	1	2.00	2	0	0	2	0	0
..................................................................................................................................CTAAAAAGTCCGCCG------------------------------------------------T---------AACAGCA......................................................................................................	23	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................CACAGAGGAGGAAAAAGAGAAGAAA........................................................................	25	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................AAAGTGAGGAA---------------AAGA---------------AAACT...............	20	1	1.00	1	0	0	1	0	0
AAGGCA---GTCCTGA-----------------GAAGG------------ATGA..................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................AGATGACACAGAGGAGGAAAAA.................................................................................	22	1	1.00	1	0	0	0	1	0
............................................................A-----------------ACCACAGA------TAAGGCTGATGT................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.....................................................................................................................................................................................................................GACACAGAGGAGGAAAAAGAGAAGAAAC.......................................................................	28	1	1.00	1	0	0	1	0	0
.................................................................................ACAGA------TAAGGCTGATGTAGA------AGAAT..................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................AGCAGATGACACAGAGGAGGA.....................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................CAGCAGATGACACAGAGGAGGA.....................................................................................	22	1	1.00	1	0	0	0	1	0
....................................................................................GA------TAAGGCTGATGTAGA------AGAATCTC...............................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
................................................................................................................................AACTAAAAAGTCCGCCG------------------------------------------------T---------AACAGC.......................................................................................................	24	1	1.00	1	0	0	0	1	0
................................................................................................................................................G------------------------------------------------T---------AACAGCAGATGACACAGAGGA........................................................................................	23	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................CGACGAAAGTGAGGAA---------------AAGA---------------AAACTC..............	26	1	1.00	1	0	1	0	0	0
..........................................................................................................................................................................................................................AGAGGAGGAAAAAGAGAAGAAACTC.....................................................................	25	1	1.00	1	1	0	0	0	0
.....................................................................................................................................AAAAGTCCGCCG------------------------------------------------T---------AACAGCA......................................................................................................	20	1	1.00	1	0	0	1	0	0
..........................................................................................................................................................................................................................AGAGGAGGAAAAAGAGAAG...........................................................................	19	1	1.00	1	0	1	0	0	0
..................................................................................................................................................................................................................................................CGACGAAAGTGAGGAA---------------AAGA---------------AAACTCC.............	27	1	1.00	1	0	0	1	0	0
......................................................................................................GTAGA------AGAATCTCCGGAGGA........................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
..................................................................................................................................CTAAAAAGTCCGCCG------------------------------------------------T---------AACAG........................................................................................................	21	1	1.00	1	0	1	0	0	0

droVir3

GAGCCC---GCC--AA---G--TTGACAGTTGCCGAGGAAAAGGAATCTGCCGAAGCATCG-----------------GAAGAGGA---AGCGAC---AGCTGTCAAAGCAGAAGCTGCGAACGAGAAAAGCGACGAG---------------------ATAGTTGAGACCGGCGCCAAGGAAAAGCCAGAGGC------------------------------GGCAGATAAGGAACCAGCTGCAGCAGCAGCCGAAAGT------------G--A-GTCC------AAGAAAA---TCGACGCGGA----	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................................................GCCAAGGAAAAGCCAGAGGC------------------------------........................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GAAGAGGA---AGCGAC---AGCTGTC...............................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAGGAAAAGGAATCTGCC....................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................GCCGAAGCATCG-----------------GAAGAGGA---AG.............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................CCGAAGCATCG-----------------GAAGAGGA---...............................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGACCGGCGCCAAGGAAAAGCCAGA.........................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GCAGCCGAAAGT------------G--A-GTCC------AAG.....................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................GGCAGATAAGGAACCAGCTGCA..................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAGGAAAAGGAATCTGCCGAAGCATCG-----------------G.........................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................AGGC------------------------------GGCAGATAAGGAAC..........................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....C---GCC--AA---G--TTGACAGTTGCCGAGG..................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................GAACGAGAAAAGCGACGAG---------------------ATAGTT...................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AAAAGCCAGAGGC------------------------------GGCAGATAAGGA............................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................G--TTGACAGTTGCCGAGGAAAAG.............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................ACGAG---------------------ATAGTTGAGACCGGC..........................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACGAGAAAAGCGACGAG---------------------ATAGT....................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................AGCAGCCGAAAGT------------G--A-GTCC------AAGA....................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............A---G--TTGACAGTTGCCGAGGAAAAGGAA..........................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................C------AAGAAAA---TCGACGCGGA----	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................AG---------------------ATAGTTGAGACCGGCGCCA......................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................G--TTGACAGTTGCCGAGGA.................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................GCCAGAGGC------------------------------GGCAGATAAGGAACCAGC......................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................G--TTGACAGTTGCCGAGGAAAAGGA...........................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................AGATAAGGAACCAGCTGCAGCA...............................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................GAAAGT------------G--A-GTCC------AAGAAAA---TC............	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CAGCAGCAGCCGAAAGT------------G--A-GT................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................GTTGCCGAGGAAAAGGAAT.........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................TGCAGCAGCAGCCGAAAGT------------G--A-GT................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................AGGAAAAGCCAGAGGC------------------------------GGCAGA..................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................GACGAG---------------------ATAGTTGAGACCGG...........................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................TGCCGAGGAAAAGGAATC........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................AAAAGCCAGAGGC------------------------------GGCAGAT.................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AGCCC---GCC--AA---G--TTGACAGTTGCCGAG...................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................G---------------------ATAGTTGAGACCGGCGCCAAGGA..................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................CAGAAGCTGCGAACGAGAAAAGCGA..................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GAGGAAAAGGAATCTGCCGAAGC...............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GCAGCCGAAAGT------------G--A-GTCC------AAGAAAA---..............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AAAGCCAGAGGC------------------------------GGCAGATA................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AAGT------------G--A-GTCC------AAGAAAA---TC............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................GTTGCCGAGGAAAAGGAATCTGCC....................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................CAGCCGAAAGT------------G--A-GTCC------AAGAAAA---T.............	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................TGAGACCGGCGCCAAGGAAAAG..............................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AGAGGA---AGCGAC---AGCTGTC...............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ACGAGAAAAGCGACGAG---------------------ATAGTTGA.................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACGTTG---CCACTGC-----------------CGAAGC---TGAGAAACCAGCTGAGAGC-----------------CTCAAGGA------CGAAGCAGCAGAAAA------AGACGATGAGAAGAAGTCAAGTGAT---------------------------------------------------------------------------------------AAGCAAGAGGA------------AGACGACTCGAAG------ATGGAAACAGAATCCATAAAGT---CGACTGCTGCCGAGGA----	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
........................................................................................................................................AT---------------------------------------------------------------------------------------AAGCAAGAGGA------------AGACGACT........................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................GAT---------------------------------------------------------------------------------------AAGCAAGAGGA------------AGACG...........................................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................AAA------AGACGATGAGAAGAAGT......................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................AGACGACTCGAAG------ATGGAAACAGAATCCA.............................	29	1	1.00	1	0	0	0	0	1	0
.................................................................................AAGGA------CGAAGCAGCAGAAA..............................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................GACGACTCGAAG------ATGGAAA......................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................AAGCAGCAGAAAA------AGACGAT................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
....TG---CCACTGC-----------------CGAAGC---TGA...........................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
..................................................................................................................................CAAGTGAT---------------------------------------------------------------------------------------AAGCAAGAGGA------------AGACGACT........................................................	27	1	1.00	1	1	0	0	0	0	0

droGri2

CAAGCG---AGTCCAG------CGAA--GCAGCCGCTAA---AGAAACGCCCGAAAAGGAG-----------------GCGGAGGC------AACAACTGATGCAAC------AGTTGCAAC---AACAGCAG---------CAACAGTTGTTGTTGACACAGCTGAAACTGATGCCGAAG------------C------------------------------CGAGCCAAAAATAGAAACTGCTGCTGAAG---------------------------------------CAA---CAACAACAGA----	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................A---AGAAACGCCCGAAAAGGAG-----------------G.........................................................................................................................................................................................................................................	21	1	1.00	1	1	0
..AGCG---AGTCCAG------CGAA--GCAGCC......................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
...GCG---AGTCCAG------CGAA--GCAGCC......................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1

dsi_9079

2l:203709-203756 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads