ID:

dsi_9071

 Coordinate:

3r:10762172-10762321 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-10.8 -10.8 -10.8

Flybase annnotation

CDS [3r_10762322_10762467_+]; exon [3r_10762322_10762467_+]; intron [3r_10761417_10762321_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCGAAACAAAATGAGGGGAAAAAGAGATGCGAAATTGGGGGCGAACTTTCGTTTTTTGGTTTTCGTTTTGCCTTTCATAGCAACCCCAGCAGCTGCAGGTGGTGCATGCCGCCACTCGAGATGTTGTTCACCTGTGGCAAGGCAGCGTTTAAAGCCCTCTTTAATGTTCGTTCCCGTGTGTGTCCTTGTATCGTTGCAGTGCCCAAGGAGAAGACGCAGGACGGCAGCAATTTGATATACATCTACATT
************************************************************************************************************************............((((((((((((((((.((((((....))))))))).............)).)))))).....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 GSM343915
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
......................................................................................................................................................................................GTCCTTGTATCGTTGCAG.................................................. 18 0 1 5.00 5 3 2 0 0 0 0 0 0 0
...................................................................................................................................................................................TGTGTCCTTGTATCGTTGCAG.................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................GATGTTGTTCACCTGTGGCAAGGCAGC....................................................................................................... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................AGGACGGCAGCAATTTGATATACATC...... 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................AGGAGAAGACGCAGGACGGCAGCAATT................. 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................GGAGAAGACGCTGCACGGCAG...................... 21 2 2 0.50 1 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................AGACACAGGACGACATCAATT................. 21 3 2 0.50 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................................................................................................AGGAGAAGACGCAGGTC........................... 17 1 3 0.33 1 0 0 1 0 0 0 0 0 0
.TCAAAACAAAATTAGGGGA...................................................................................................................................................................................................................................... 19 2 5 0.20 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................AAGGAGAAGACGCAG.............................. 15 0 7 0.14 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................................................................................................AGGAGAAGACGCGGGGCG.......................... 18 2 8 0.13 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................GTGGTAAGGCAGCGGTT................................................................................................... 17 2 9 0.11 1 0 0 0 0 0 0 0 1 0
..............................CGAAATTGGGGGGGA............................................................................................................................................................................................................. 15 1 10 0.10 1 0 0 0 0 0 0 0 0 1
..............................................................................................................................................................................................................AGGAGAATACGCAGGACT.......................... 18 2 11 0.09 1 0 0 0 0 0 1 0 0 0
......................................................TTTTGGTTTTCGTTT..................................................................................................................................................................................... 15 0 20 0.05 1 0 0 1 0 0 0 0 0 0
..............................................................................................TGCTGGTGGTGCATG............................................................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................GTATGGTTGCAGTCCC.............................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Anti-sense strand reads

GAGCTTTGTTTTACTCCCCTTTTTCTCTACGCTTTAACCCCCGCTTGAAAGCAAAAAACCAAAAGCAAAACGGAAAGTATCGTTGGGGTCGTCGACGTCCACCACGTACGGCGGTGAGCTCTACAACAAGTGGACACCGTTCCGTCGCAAATTTCGGGAGAAATTACAAGCAAGGGCACACACAGGAACATAGCAACGTCACGGGTTCCTCTTCTGCGTCCTGCCGTCGTTAAACTATATGTAGATGTAA
**************************************************............((((((((((((((((.((((((....))))))))).............)).)))))).....)))))************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
............................................................................GAATCGTTGGGGTCGTCGGGGT........................................................................................................................................................ 22 3 1 1.00 1 1 0 0 0
.........................................................................................................................................................................................................CGGGTTCCTCTGCTGCGTAGT............................ 21 3 7 0.14 1 0 1 0 0
....................................................................................................................................................................TACCAGCAAGGACACACA.................................................................... 18 2 11 0.09 1 0 0 1 0
................................................................................................................................................TCGCAAAGTTAGGGAGAGA....................................................................................... 19 3 17 0.06 1 0 0 0 1

Generated: 04/24/2015 at 10:48 AM