ID:

dsi_9066

 Coordinate:

3l:4570451-4570665 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.4 -26.2 -26.1

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCCCCCGGAGACCAACGCCTCTCCTCCGCAACTTTCTATTACTTTTTGTTAACTTCTCCCCTTCTTTCTTTCGGTTTTCCTCCTGTATTTCTCTCTGTTGTTGTTGCTGTGCCCGCAGGATATTTAAGACCTTTTTTTGCTGGCGTTTAATTATAGTTTTCATTGCTCACTCTCTTTCCCGCATCTCTTTTTCCAATTAGCGCCGAAGTTCGGCGCAAAGTAAAAAGCAAAAATATAGTATTTGTTGTTTTTATTTGGCCCGCAGACCGTGCAGTAAAAACAACAACTTTAACTACAGCAGCAACTTTAACTAAC
********************************************************************************************..((((.((((..((...(((.((((((..............)))))).))))).)))).))))..............................((((((....((.(((((((...))))))).))..))))))..************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 M025
embryo
 SRR618934
dsim w501 ovaries
 M053
female body
...................................................................................................................................................................................................................................................................................................AGTAGAGCAGCAACGTTAA..... 19 3 20 17.65 353 353 0 0 0 0 0 0 0 0
...........................................................................................TCTTTGTTGTTGTTGCTGTGC........................................................................................................................................................................................................... 21 1 1 6.00 6 0 0 2 2 2 0 0 0 0
....................................................................................................................................................................................................................................................................CGCAGACCGTACCGTAAA..................................... 18 2 2 3.50 7 0 2 3 1 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................ACAACAACTTTAACTACAGCGGCA............ 24 1 1 1.00 1 0 1 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................AAAACAACAACTTTAACTACAGCGGC............. 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................................TTCGGCGCAAAGTAAAAAGCA...................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
.......................................................................................................................................TATGCAGGCGTTTAATTATA................................................................................................................................................................ 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................CTCTGTTGTTGTTGCTGTGCCCGC....................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................CGTGCAGTAAAAACAACAACT........................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.....................................................TTCTGCCCTTCTCTCGTTCGG................................................................................................................................................................................................................................................. 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................AGTAGAGCAGCAACTTTAA..... 19 2 12 0.50 6 6 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................CGCAGACCGTACCGTAAAC.................................... 19 3 5 0.40 2 0 0 1 1 0 0 0 0 0
.................................................................................................................................................................................................................TCGGCGCATAGTAAAA.......................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................GCAGACCGTACCGTAAA..................................... 17 2 11 0.27 3 0 0 0 2 1 0 0 0 0
...................................................................................................................................................................................................................................................................ACGCAGACCGTACCGTAAA..................................... 19 3 8 0.25 2 0 0 0 2 0 0 0 0 0
..........................................................................................GTCTTTGTTGTTGTTGCTGTG............................................................................................................................................................................................................ 21 2 20 0.25 5 0 0 4 1 0 0 0 0 0
...................................................................................................GTTGTTGCGGTGCCCG........................................................................................................................................................................................................ 16 1 5 0.20 1 0 0 0 0 0 0 0 1 0
...........................................................................................TCTTTGTTGTTGTTGCTGTGCG.......................................................................................................................................................................................................... 22 2 5 0.20 1 0 0 1 0 0 0 0 0 0
..........................................TGATTGTTAACTCCTCCCCTT............................................................................................................................................................................................................................................................ 21 3 5 0.20 1 0 0 1 0 0 0 0 0 0
.......GAGACCAACGCCGCT..................................................................................................................................................................................................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAACTAGCGCCGAAG........................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................TGTTCACTCGGTTTCCCGCA.................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0
...................................................................CCTTCGGTTTTCCTTCTG...................................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 1 0 0 0
..........................................................CCCCTCTGTCTTTCGGTT............................................................................................................................................................................................................................................... 18 2 16 0.06 1 0 1 0 0 0 0 0 0 0
......GGAGACTAACGCCGCACC................................................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
............................................................................................................................TAAGACCTCTGTTTGC............................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0
.........................................................................................................GCTGTGGCCGTAGGATA................................................................................................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................CGTGTAGTAAAAACAAGAG............................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

GGGGGGCCTCTGGTTGCGGAGAGGAGGCGTTGAAAGATAATGAAAAACAATTGAAGAGGGGAAGAAAGAAAGCCAAAAGGAGGACATAAAGAGAGACAACAACAACGACACGGGCGTCCTATAAATTCTGGAAAAAAACGACCGCAAATTAATATCAAAAGTAACGAGTGAGAGAAAGGGCGTAGAGAAAAAGGTTAATCGCGGCTTCAAGCCGCGTTTCATTTTTCGTTTTTATATCATAAACAACAAAAATAAACCGGGCGTCTGGCACGTCATTTTTGTTGTTGAAATTGATGTCGTCGTTGAAATTGATTG
**************************************************************************************..((((.((((..((...(((.((((((..............)))))).))))).)))).))))..............................((((((....((.(((((((...))))))).))..))))))..******************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR902009
testis
 M024
male body		 GSM343915
embryo
..............................TGAAAGGTAAGGCAAAACAATTG...................................................................................................................................................................................................................................................................... 23 3 1 3.00 3 3 0 0 0 0 0 0 0 0
GGGGGGCCTCGGGTT............................................................................................................................................................................................................................................................................................................ 15 1 6 2.33 14 0 0 0 9 5 0 0 0 0
..............................................................................................................................................................................................................................................................AACCGGGCGTCTGGCACGTCA........................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.......................................ATGAAAAACAAGTGGAGAGGTGA............................................................................................................................................................................................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0 0 0 0
...................AGAGGAGGCGTTGAAAGACAAT.................................................................................................................................................................................................................................................................................. 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
..........TGGTTGCGGAAAGGA.................................................................................................................................................................................................................................................................................................. 15 1 5 0.80 4 0 0 3 1 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................TGATGTCCTTGGTGAAATTGAT.. 22 3 2 0.50 1 0 1 0 0 0 0 0 0 0
...................................................................................................CCACAACGAAACGGGCGTCCT................................................................................................................................................................................................... 21 2 2 0.50 1 0 0 0 0 0 1 0 0 0
...GGGCCTCGGGTTGCGAAG...................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0 0
.GGGGGCCTCGGGTTG........................................................................................................................................................................................................................................................................................................... 15 1 5 0.40 2 0 0 0 2 0 0 0 0 0
...............................................................................CAGGACATAAAGACAGACAAGA...................................................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................................................................................................TGACGTCGTTGAAATT..... 16 1 12 0.17 2 1 1 0 0 0 0 0 0 0
...................................................................................................CCACAACGAAACGGGCGT...................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 1 0
AGGGGGCCTCTGGTT............................................................................................................................................................................................................................................................................................................ 15 1 6 0.17 1 0 0 1 0 0 0 0 0 0
..............................TGAAAGGTAAGGCAAAACAAT........................................................................................................................................................................................................................................................................ 21 3 8 0.13 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GAGAAAAAGGTTAAACTCGGA.............................................................................................................. 21 3 10 0.10 1 0 0 1 0 0 0 0 0 0
.GGGGGCCTCGGGTTTCG......................................................................................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 1 0 0 0 0 0 0
.GGGGGCCTCGGGTTCAGGA....................................................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 0 0 1 0 0 0 0 0
............................................................................AAGGAGGACATTAAGCGAA............................................................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.................................AAGATAAGGCAAAACAAT........................................................................................................................................................................................................................................................................ 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0
..........TGGTTGCGGAAAGTAGCCG.............................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................AAAAAAACTACCGCTAAT...................................................................................................................................................................... 18 2 20 0.05 1 0 1 0 0 0 0 0 0 0
..............................TGAAAGGTAATGCAAAAC........................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................TATTACCAAAAGTAACGA.................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1
......................................................................................................................................................................................................................................................................................................TGGCGTCGTTGAAAT...... 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:4570401-4570715 - dsi_9066 CCCCCC-GG---AG-ACCAACGCCTCTC------C---------------TCCGCAACTTTCTATTACTTTTT--------------------------------------------GTTA-ACTTCT---------------------CCC---CTTCTTTC-------------------------------------------TTTCGGTTTTCCTCCTGTATTTCT--CTCTGTTGTTGTTGCTGTGCCCGCAGGATATTTAAGAC-----C-TTT-TTTTGCTG--------------------GCGTTTAATTATAGTTTTC----ATT--------------GCTCACTC----------------TCTTTCCCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------CCGAAGTTCGGCGCAAAGTA-AAA---------------------------AGCAAAAATA-----------------TA-----------------------GTATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGCAGTAAAA-ACAACA------ACTTTAAC--------------TACAG-------------------------CAGCAACTTTAACTAAC
droSec2 scaffold_2:4607534-4607827 - CCCCCC-GG---AG-ACCAACGCCTCTC------------------------CGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT---------------------CCC---CTTCTTTC-------------------------------------------TTTCGGTTTTCCTCCTGTTTTTCT--CTCTGTTGTTGTTGCTGTGCCCGCAGGATACTTAAGAC--------TT-TTTTGCTG--------------------GCGTTTAATTATAGTTTTG----CTC------------------ACTC----------------TCTTTCCCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------CCGAAGTTCCGCGCAAAGTA-AAA---------------------------AGCAAAAATA-----------------TA-----------------------GTATTTCTTGTTTT--TATTTGGCCCGCAGACCGTGCAGTAAAA-ACAACA------ACTTTAAC--------------TACAG-------------------------CTGCA------------
dm3 chr3L:4625300-4625593 - CCCCTC-GG---AG-ACCAACGCCTCTC------C---------------TTCGCAACTTTCTGTTACTTTAT--------------------------------------------GTTA-ACTTCT---------------------CCC---CTTCTTTC-------------------------------------------TCTTGGTTTTCCTCCTGTATTTTT--CTCTGTTGTTGTTGCTGTGCCCGCAGGATATTTAAGAC-----C-TTT-TTTTGCTG--------------------GCGTTTAATTATAGTTTTC----ATT--------------GCTCTCTC----------------TCCTTCCCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------TCGAAGTTCGGCGTAAAGTA-AAC---------------------------AGCAAAAATA-----------------TA-----------------------GTATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGCAGTAAAA-ACAACA------ACTTTAAC--------------A----------------------------------------------
droEre2 scaffold_4784:7335325-7335627 - CCCTTC-GC---AG-ACCAACGCCTCTC------C---------------TCCGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT---------------------CCTTAACTTCTTTC-------------------------------------------TCTCGGCCTTCCTTCTTTGTTTCT--CTCTGTTGTTGTTGCTGCGCCCGCAGGATATTTAAGAC-----C-TTT--TTTGCTG--------------------GCGTTTAATTATAGTTTTC----ATT--------------CCCCTCTC----------------TCTTTCCCGC------------------A--------TCTCT--TTCCAATTAGCG-----------CCGAAGTTCAGAGCAAAGTA-AAA---------------------------AGCAAAAATA-----------------TA-----------------------GTATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGCATTAAAT-ACAACA------ACTTTAAC--------------TACAG-------------------------TGGCA------------
droYak3 3L:5200390-5200681 - CCCCTC-GC---AG-ACCAACGCCTCTC------C---------------TCCGCAGCTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT--------------------------------GTC-------------------------------------------TCTCGGTTTTCCTACTTTATTTCT--CTCTGTTGTTGTTGCTGTGCCCGCAGGATATTTAAGAC-----C-TTT--TTTGCTG--------------------GCGTTTAATTATAGTTTTC----ATT--------------CCA--CTC----------------TCTTTCCCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------CCGAAGTTCAGCGCAAAGTA-AAA---------------------------AGCAAAAATT-----------------TA-----------------------GTATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGCATTAAAA-ACAACA------ACGTTAAC--------------TACAG-------------------------TGGCA------------
droEug1 scf7180000409466:2400637-2400933 - CCCCTT-GC---AG-ACCAACGCCTCTC------C----------------CTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT--------------------TCCC---CTT--------------------------------------------------------TTCCATTTAT-TTTTT--CTTTATTGTTGTTGTTGTGCCCGCAGGATATTTAAGAC-----C-TTT-TTTTGCTG--------------------GCGTTTAATTATAGTTTTT----ATC--------------CTC--CTC----------------TCTTTCTCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------CCGAACTTCGGCGCAAAGTA-A-A---------------------------AGCAAAA-TC-A-AAA--AATC-----TC-----------------------ATATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGAATTAAAA-ACAAC---ACCAACTTTAAC--------------TACAG-------------------------TGGCA-----------G
droBia1 scf7180000302428:9840528-9840795 + CGTCTC----------------CCTCCC----------------------CCTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-GCTGCT---------------------CCC---CTCC--------------------------------------------------CCATTTTCCTCCTT----------TTTGTTGTCGTTCCTGCGCCCGCAGGACCTTCAAGC-----------------CTG--------------------GCGTTTAATTATAGTTTT-----ATC--------------TCC--CTC----------------TCTTTCCCGC------------------A--------ACTC---TTCCAATTAGCG-----------CCGAACTTCAG--CAAAGCA-A-A---------------------------AGCAAAAATC-A---A--AGTCTCATAC------------------------ATATTTGTTGTTT---TATTTGGCCCGCAGACCGTGAATTAAA---CAAC---ATCAACTTTAAC--------------TACAG-------------------------TGGCA-----------G
droTak1 scf7180000415941:556250-556539 - CCCCTC-GC---AG-ACCAACGCCTCTC------CCTCTCCTCTCTCTCCACTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT---------------------CCC---CTTTTT-------------------------------------------------------------------------------------TTTTGCCCGCAGGATATTTAAGAC-----C-TTTTTTTCGCTG--------------------TCGTTTAATTATAGTTTTT----ATC--------------CCTCTCTC----------------TCTCGCTCGC------------------A--------TCTCT--TTCCAATTAGCG-----------CCGAACTTCGGCACAAAGTA-AAA---------------------------AGCAAAAATC-AAAAA--AATCTC----------------------------ATATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGAATTAAAA-ACAAC---ATCAACTTTAAC--------------TACAG-------------------------TGGTA-----------G
droEle1 scf7180000491249:5539283-5539593 - CCCCTT-GC---AG-ACCAACGCCTCTCCTCTCCC---------------TCTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCC---------------------CCC---CTTCTTTT-------------------------------------------TCTTGATTTTCCATA-GT-----------TTTTGTTGTTGTTGTGCCCGCAGGATATTTAAAAC-----C-TTT-TTTCGCTG--------------------GCGTTTAATTATAGTTTTT----CTC--------------CCC--CTC----------------GCCTTCTCGC------------------A--------TCTCTT-TTCCAATTAGCG-----------TCGAACTTTTTGGCAAAGTA-AAA---------------------------AGCAAAAATACTTAAA--AATTTCATAT------------------------ACATATGTTGTTTT-----TTGGCCCGCAGACCCTGAATTAAAA-ACAAC---ATCAAGTTTAAC--------------TACGG-------------------------TGGCA-----------G
droRho1 scf7180000779636:101142-101436 - CCCCTT-AC---AG-ACCAACGCCTCTC------CC--------------TCTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTGCT--------------------CCCC---CTTCATTT-------------------------------------------TCTTGATTTTCCTTC----------------TTTTTGTTGTTGTGCCCGCAGGATATTTAGAAC-----C-TTTTTTTTGCTG--------------------GCGT-TAATTATAGTTTTT----CT-----------------C--CTC----------------TC-TTCTCGC------------------A--------TCTCTT-TTCCAATTAGCG-----------CCGAACTTTAGCCTAAAGTAGAAA---------------------------AGCAAAA-TACAAAAA--AAT-TC----------------------------ATATTTGTTGTTTT----TTTGGCCCGCAGACCGTGAATTAAAA-ACAAC---ATCAAGTTTAAC--------------TACAG-------------------------TGGCA-----------G
droFic1 scf7180000454065:958701-958991 + CCC-TT-GC---AG-ACCAACGCCTCTC------C-----------------TGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-CTTTTT---------------------CCC---CTTCTTTT-----------------------------------------TTTCTTG-TTTTTCTCC-------------------TTTTTGTTGCGCCCGCAGGATATTTAAGAC-----C-CTT-TTTCGCTA--------------------GCGTTTAATTATAGTTTTT----CT----------------------C----------------CCTTTCTCGC------------------A--------TCTCTT-TTCCAATTAGCG-----------CCGAACTTCAGCGCAAAGTAAAAA---------------------------AGCAAAAATACA-AAA--AATCTC----------------------------ATATTTGTTGTTTTTTTATTTGGCCCGCAGACCGTGAATTAAAA-ACAAC---ATCAACTTTACC--------------TACAG-------------------------TGGCA-----------G
droKik1 scf7180000302486:255290-255563 + CCCCTC-GC---AGAACCAACGCCTCTC------------------------TGAAACTTTCTGTTACTTT-T--------------------------------------------GTTAAACTTCT--------------------TTCC---CTTCCTC---------------------------------------------------------------TTTCT--CCCTCTTATTGTTGCTGTGCCCGCAGGATATGTGAAAC-----T-TTT-TTCCGCTG--------------------GTGTTAAATTATAGTTTTTTTT-ATC--------------CCT--CTTTCTTTCCTC--------ATCTCCTCC------------------A--------TCCAA-TTTCCAATTAACT-----------ACGAACTTCAGCA-AAAGCA-T-A---------------------------AGCGAAAA-------A--AAT-AT--ATATT---------------------TTATTTGTTGTTT-------------GCAGACCGTGAATTAAAA-ACAACA------------AC--------------TAAAG-------------------------C----------------
droAna3 scaffold_13337:2711688-2711999 - ACACT--------A-ACCAACGCCTCTC------------------------TGCAACTTTCTGTTACTTTTT--------------------------------------------T-------------------------------CCT---CTTCTTTC----------------------------------------------CGTGTTTCCAACTTT-----------TTTTTTTGTTGTTGTGCCCGCAGGATATTAAAGGG-----T-TTT-TTTTTTTG----------------GAACGTGTTTAATTATAGTTTTT----ATTTTTCTTATTTTCTCTCC--CTC----TGTTT----------CGC--TCCATCCCTCCCCTCCCA-C---TATTCAT---ATTTCCCAATTAGCG-----------------------GCAAAGCA-A-A---------------------------GGCAAAAATC-----------------TATT---------------------TCATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGAATAAAAATCCAACA---ACAAC---AAC--------------AAAAT-------------------------CGGCGACTGCGTTTACG
droBip1 scf7180000396741:28809-29110 + TTTCGC-AC---TA-ACCAACGCCTCTC-------------------------GCAACTTTCTGTTACTTTTT--------------------------------------------G-------------------------------CCT---CTTCTT-C-------------------------------------------TTCCGTGTTTCCAACTT------------TTTTTTTGTTTTTGTGCCCGCAGGATATTAAAGGC-----T-TTT--TTTTCTG-----------------AACGTGTTTAATTATAGTTTTT----TTC--------------TCT--CTT----TGTTT----------CGC--TCC----------TTCCACC---TATTCAT---ATTTCCCAATTAGCG-----------GCAAACTTTAGGGCAAAGCA-A-A---------------------------GGCAAAAATC-----------------TATT---------------------TCATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGAATAAAAA-CCAACA---GCAAC---AAC--------------AAAAT-------------------------CGGCGACTGCGTTTACG
dp5 XR_group8:2735148-2735580 - T-----------------------------------------------------------TCTGTTC-TTGTT--------------------------------------------GTTG-TCG---------------------------------------------------------------TGCTTTCCCCTCCCTTT-CTTCAGTCCTTTTTTTGTGAATTTCC--------TACCCGCTGCGCCCGCAGGATATATCT--CCTGTTCATTT-TTTTGGTGTTCCCTCCCCCCACTCGTACGTGTTTAATTATAGTTTCGCTGCGTC--------------GTTCTCTCTCTTTACTA--------CTCTCCCGC------------------ATTCATATATATCT-CTTCCAATTAGCGGCCCGTGTGCCTCGAATTTCGGTGCAAAGCA-GAACTTCAATAGGGTCTGTGTGTGAG----AGAGAGAGGGAG-AGAAAACT--C---TATTTGATTTAGTTTGATCATAGTTGTATTTGTTGCTTT--TAGTCCCCCTAACGACCGTGAAA-ATAA-GCAACAACATAAAGCTGAAAGCAGAATCAGCATCAACAGAGCGACGCGTCGACGGCGACTGCGACTGCGACTGCGTTTATG
droPer2 scaffold_24:319212-319780 + CCCCCGCGCGATAG-ACCAACGCCTCGC------C----------------CAGCAACT-TCTGTTACTTCTTTTGCTCCATCGCGAAGAAATTCTTCGTTTTTTTTTTGTTGTTTTGTGA-ATTTCCTTGTGCCGACGATTCCTTGTCCCA---CTCCATTTATTCATTCTGTTCTTGTTGTTGTCGTGCTTTCCCCTCCCTTT-CTTCAGTCCTTTTTTTGTGAATTTCC--------TACCCGCTGCGCCCGCAGGATATATCT--CCTGTTCA-TT-TTTTGGTGTTCCCTCCCCCCACTCGTACGTGTTTAATTATAGTTTCGCTGCGCC--------------GTTCTCTCGCTTTACTACTCTCCCGCATTCATAC------------------A--------TATCTC-TTCCAATTAGCGGCCCGTGTGCCTCGAATTTCGGTGCAAAGCA-GAACTTCAATACGGTCTGTGTGTGAGAGAGAGAGAGAGGGAG-AGAAAACT--C---TATTTGATTTAGTTTGATCATAGTTGTATTTGTTGCTTT--TAGTCCCCCTAACGACCGTGAAA-ATAA-GCAACAACATAAAGCTGAAAGCAGAATCAGCATCAACAGAGCGACGCGTCGACGGCGAC------TGCGACTGCGTTTAT-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CCCCCC-GG---AG-ACCAACGCCTCTC------C---------------TCCGCAACTTTCTATTACTTTTT--------------------------------------------GTTA-ACTTCT---------------------CCC---CTTCTTTC-------------------------------------------TTTCGGTTTTCCTCCTGTATTTCT--CTCTGTTGTTGTTGCTGTGCCCGCAGGATATTTAAGAC-----C-TTT-TTTTGCTG--------------------GCGTTTAATTATAGTTTTC----ATT--------------GCTCACTC----------------TCTTTCCCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------CCGAAGTTCGGCGCAAAGTA-AAA---------------------------AGCAAAAATA-----------------TA-----------------------GTATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGCAGTAAAA-ACAACA------ACTTTAAC--------------TACAG-------------------------CAGCAACTTTAACTAACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCGGCGCAAAGTA-AAA---------------------------AGCA..............................................................................................................................................................................2111.00100000000000100000
........................................................................................................................................................................................................................................CTCTGTTGTTGTTGCTGTGCCCGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGCAGTAAAA-ACAACA------ACT..................................................................2111.00100000001000000000
droSec2
CCCCCC-GG---AG-ACCAACGCCTCTC------------------------CGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT---------------------CCC---CTTCTTTC-------------------------------------------TTTCGGTTTTCCTCCTGTTTTTCT--CTCTGTTGTTGTTGCTGTGCCCGCAGGATACTTAAGAC--------TT-TTTTGCTG--------------------GCGTTTAATTATAGTTTTG----CTC------------------ACTC----------------TCTTTCCCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------CCGAAGTTCCGCGCAAAGTA-AAA---------------------------AGCAAAAATA-----------------TA-----------------------GTATTTCTTGTTTT--TATTTGGCCCGCAGACCGTGCAGTAAAA-ACAACA------ACTTTAAC--------------TACAG-------------------------CTGCA------------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
CCCCTC-GG---AG-ACCAACGCCTCTC------C---------------TTCGCAACTTTCTGTTACTTTAT--------------------------------------------GTTA-ACTTCT---------------------CCC---CTTCTTTC-------------------------------------------TCTTGGTTTTCCTCCTGTATTTTT--CTCTGTTGTTGTTGCTGTGCCCGCAGGATATTTAAGAC-----C-TTT-TTTTGCTG--------------------GCGTTTAATTATAGTTTTC----ATT--------------GCTCTCTC----------------TCCTTCCCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------TCGAAGTTCGGCGTAAAGTA-AAC---------------------------AGCAAAAATA-----------------TA-----------------------GTATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGCAGTAAAA-ACAACA------ACTTTAAC--------------A----------------------------------------------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGACCGTGCAGTAAAA-ACAACA------ACTT.................................................................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCCGCAGACCGTGC.........................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................TATAGTTTTC----ATT--------------GCTCTCTC----------------TCCTT...................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGGCGTAAAGTA-AAC---------------------------AGC...............................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCAATTAGCG-----------TCGAAGTTCGGCG........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCAATTAGCG-----------TCGAAGTTCGGCG........................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGCCCGCAGACCGTGCAGTAAA...................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................TAT--------------------------------------------GTTA-ACTTCT---------------------CCC---CTTCTTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................TTT--CTCTGTTGTTGTTGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGTTGTTTT--TATTTGGCCCGCA.................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...CTC-GG---AG-ACCAACGCCTCTC------C---------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGTTGTTTT--TATTTGGCCCGCAG................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCCGCAGACCGTGCAGTAAAA-.................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................TT--------------GCTCTCTC----------------TCCTTCCCGC------------------A--------TCTC...............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................TATTTTT--CTCTGTTGTTGTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGGCCCGCAGACCGTGCAA.......................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGTTGTTTT--TATTTGGCCCG...................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTTTT--TATTTGGCCCGCAGT...............................................................................................2211.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCAGTAAAA-ACAACA------AC...................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCGTGCAGTAAAA-ACAACA------AC...................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTCGGCGTAAAGTA-AA..............................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTTTT--TATTTGGCCCGCAGAA..............................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------------------GTATTTGTTGTTTT--TATTTGGCCCGC..................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCGTGCAGTAAAA-ACAACA------AC...................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTCGGCGTAAAGTA-AAC---------------------------AGCAA.............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................TGTATTTTT--CTCTGTTGTTGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
droEre2
CCCTTC-GC---AG-ACCAACGCCTCTC------C---------------TCCGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT---------------------CCTTAACTTCTTTC-------------------------------------------TCTCGGCCTTCCTTCTTTGTTTCT--CTCTGTTGTTGTTGCTGCGCCCGCAGGATATTTAAGAC-----C-TTT--TTTGCTG--------------------GCGTTTAATTATAGTTTTC----ATT--------------CCCCTCTC----------------TCTTTCCCGC------------------A--------TCTCT--TTCCAATTAGCG-----------CCGAAGTTCAGAGCAAAGTA-AAA---------------------------AGCAAAAATA-----------------TA-----------------------GTATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGCATTAAAT-ACAACA------ACTTTAAC--------------TACAG-------------------------TGGCA------------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGGCCCGCAGACCGTGCATTAA....................................................................................2611.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGGCCCGCAGACCGTGCATTAAA...................................................................................2711.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATA-----------------TA-----------------------GTATTTGTTGTTTT--..............................................................................................................2211.0010000100
droYak3
CCCCTC-GC---AG-ACCAACGCCTCTC------C---------------TCCGCAGCTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT--------------------------------GTC-------------------------------------------TCTCGGTTTTCCTACTTTATTTCT--CTCTGTTGTTGTTGCTGTGCCCGCAGGATATTTAAGAC-----C-TTT--TTTGCTG--------------------GCGTTTAATTATAGTTTTC----ATT--------------CCA--CTC----------------TCTTTCCCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------CCGAAGTTCAGCGCAAAGTA-AAA---------------------------AGCAAAAATT-----------------TA-----------------------GTATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGCATTAAAA-ACAACA------ACGTTAAC--------------TACAG-------------------------TGGCA------------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT--TATTTGGCCCGCAGACCGT...........................................................................................2111.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCAGCGCAAAGTA-AAA---------------------------AGC...............................................................................................................................................................................2111.00100000010000
droEug1
CCCCTT-GC---AG-ACCAACGCCTCTC------C----------------CTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT--------------------TCCC---CTT--------------------------------------------------------TTCCATTTAT-TTTTT--CTTTATTGTTGTTGTTGTGCCCGCAGGATATTTAAGAC-----C-TTT-TTTTGCTG--------------------GCGTTTAATTATAGTTTTT----ATC--------------CTC--CTC----------------TCTTTCTCGC------------------A--------TCTCTTTTTCCAATTAGCG-----------CCGAACTTCGGCGCAAAGTA-A-A---------------------------AGCAAAA-TC-A-AAA--AATC-----TC-----------------------ATATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGAATTAAAA-ACAAC---ACCAACTTTAAC--------------TACAG-------------------------TGGCA-----------GSizeHit CountTotal NormTotal
No Reads
droBia1
CGTCTC----------------CCTCCC----------------------CCTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-GCTGCT---------------------CCC---CTCC--------------------------------------------------CCATTTTCCTCCTT----------TTTGTTGTCGTTCCTGCGCCCGCAGGACCTTCAAGC-----------------CTG--------------------GCGTTTAATTATAGTTTT-----ATC--------------TCC--CTC----------------TCTTTCCCGC------------------A--------ACTC---TTCCAATTAGCG-----------CCGAACTTCAG--CAAAGCA-A-A---------------------------AGCAAAAATC-A---A--AGTCTCATAC------------------------ATATTTGTTGTTT---TATTTGGCCCGCAGACCGTGAATTAAA---CAAC---ATCAACTTTAAC--------------TACAG-------------------------TGGCA-----------GSizeHit CountTotal NormTotal
No Reads
droTak1
CCCCTC-GC---AG-ACCAACGCCTCTC------CCTCTCCTCTCTCTCCACTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCT---------------------CCC---CTTTTT-------------------------------------------------------------------------------------TTTTGCCCGCAGGATATTTAAGAC-----C-TTTTTTTCGCTG--------------------TCGTTTAATTATAGTTTTT----ATC--------------CCTCTCTC----------------TCTCGCTCGC------------------A--------TCTCT--TTCCAATTAGCG-----------CCGAACTTCGGCACAAAGTA-AAA---------------------------AGCAAAAATC-AAAAA--AATCTC----------------------------ATATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGAATTAAAA-ACAAC---ATCAACTTTAAC--------------TACAG-------------------------TGGTA-----------GSizeHit CountTotal NormTotal
No Reads
droEle1
CCCCTT-GC---AG-ACCAACGCCTCTCCTCTCCC---------------TCTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTTCC---------------------CCC---CTTCTTTT-------------------------------------------TCTTGATTTTCCATA-GT-----------TTTTGTTGTTGTTGTGCCCGCAGGATATTTAAAAC-----C-TTT-TTTCGCTG--------------------GCGTTTAATTATAGTTTTT----CTC--------------CCC--CTC----------------GCCTTCTCGC------------------A--------TCTCTT-TTCCAATTAGCG-----------TCGAACTTTTTGGCAAAGTA-AAA---------------------------AGCAAAAATACTTAAA--AATTTCATAT------------------------ACATATGTTGTTTT-----TTGGCCCGCAGACCCTGAATTAAAA-ACAAC---ATCAAGTTTAAC--------------TACGG-------------------------TGGCA-----------GSizeHit CountTotal NormTotal
No Reads
droRho1
CCCCTT-AC---AG-ACCAACGCCTCTC------CC--------------TCTGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-ACTGCT--------------------CCCC---CTTCATTT-------------------------------------------TCTTGATTTTCCTTC----------------TTTTTGTTGTTGTGCCCGCAGGATATTTAGAAC-----C-TTTTTTTTGCTG--------------------GCGT-TAATTATAGTTTTT----CT-----------------C--CTC----------------TC-TTCTCGC------------------A--------TCTCTT-TTCCAATTAGCG-----------CCGAACTTTAGCCTAAAGTAGAAA---------------------------AGCAAAA-TACAAAAA--AAT-TC----------------------------ATATTTGTTGTTTT----TTTGGCCCGCAGACCGTGAATTAAAA-ACAAC---ATCAAGTTTAAC--------------TACAG-------------------------TGGCA-----------GSizeHit CountTotal NormTotal
No Reads
droFic1
CCC-TT-GC---AG-ACCAACGCCTCTC------C-----------------TGCAACTTTCTGTTACTTTTT--------------------------------------------GTTA-CTTTTT---------------------CCC---CTTCTTTT-----------------------------------------TTTCTTG-TTTTTCTCC-------------------TTTTTGTTGCGCCCGCAGGATATTTAAGAC-----C-CTT-TTTCGCTA--------------------GCGTTTAATTATAGTTTTT----CT----------------------C----------------CCTTTCTCGC------------------A--------TCTCTT-TTCCAATTAGCG-----------CCGAACTTCAGCGCAAAGTAAAAA---------------------------AGCAAAAATACA-AAA--AATCTC----------------------------ATATTTGTTGTTTTTTTATTTGGCCCGCAGACCGTGAATTAAAA-ACAAC---ATCAACTTTACC--------------TACAG-------------------------TGGCA-----------GSizeHit CountTotal NormTotal
No Reads
droKik1
CCCCTC-GC---AGAACCAACGCCTCTC------------------------TGAAACTTTCTGTTACTTT-T--------------------------------------------GTTAAACTTCT--------------------TTCC---CTTCCTC---------------------------------------------------------------TTTCT--CCCTCTTATTGTTGCTGTGCCCGCAGGATATGTGAAAC-----T-TTT-TTCCGCTG--------------------GTGTTAAATTATAGTTTTTTTT-ATC--------------CCT--CTTTCTTTCCTC--------ATCTCCTCC------------------A--------TCCAA-TTTCCAATTAACT-----------ACGAACTTCAGCA-AAAGCA-T-A---------------------------AGCGAAAA-------A--AAT-AT--ATATT---------------------TTATTTGTTGTTT-------------GCAGACCGTGAATTAAAA-ACAACA------------AC--------------TAAAG-------------------------C----------------SizeHit CountTotal NormTotal
No Reads
droAna3
ACACT--------A-ACCAACGCCTCTC------------------------TGCAACTTTCTGTTACTTTTT--------------------------------------------T-------------------------------CCT---CTTCTTTC----------------------------------------------CGTGTTTCCAACTTT-----------TTTTTTTGTTGTTGTGCCCGCAGGATATTAAAGGG-----T-TTT-TTTTTTTG----------------GAACGTGTTTAATTATAGTTTTT----ATTTTTCTTATTTTCTCTCC--CTC----TGTTT----------CGC--TCCATCCCTCCCCTCCCA-C---TATTCAT---ATTTCCCAATTAGCG-----------------------GCAAAGCA-A-A---------------------------GGCAAAAATC-----------------TATT---------------------TCATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGAATAAAAATCCAACA---ACAAC---AAC--------------AAAAT-------------------------CGGCGACTGCGTTTACGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAAAAATCCAACA---ACAAC---................................................................2011.001010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC---AAC--------------AAAAT-------------------------CGGCGACTGC.......2111.001001000
droBip1
TTTCGC-AC---TA-ACCAACGCCTCTC-------------------------GCAACTTTCTGTTACTTTTT--------------------------------------------G-------------------------------CCT---CTTCTT-C-------------------------------------------TTCCGTGTTTCCAACTT------------TTTTTTTGTTTTTGTGCCCGCAGGATATTAAAGGC-----T-TTT--TTTTCTG-----------------AACGTGTTTAATTATAGTTTTT----TTC--------------TCT--CTT----TGTTT----------CGC--TCC----------TTCCACC---TATTCAT---ATTTCCCAATTAGCG-----------GCAAACTTTAGGGCAAAGCA-A-A---------------------------GGCAAAAATC-----------------TATT---------------------TCATTTGTTGTTTT--TATTTGGCCCGCAGACCGTGAATAAAAA-CCAACA---GCAAC---AAC--------------AAAAT-------------------------CGGCGACTGCGTTTACGSizeHit CountTotal NormTotal
No Reads
dp5
T-----------------------------------------------------------TCTGTTC-TTGTT--------------------------------------------GTTG-TCG---------------------------------------------------------------TGCTTTCCCCTCCCTTT-CTTCAGTCCTTTTTTTGTGAATTTCC--------TACCCGCTGCGCCCGCAGGATATATCT--CCTGTTCATTT-TTTTGGTGTTCCCTCCCCCCACTCGTACGTGTTTAATTATAGTTTCGCTGCGTC--------------GTTCTCTCTCTTTACTA--------CTCTCCCGC------------------ATTCATATATATCT-CTTCCAATTAGCGGCCCGTGTGCCTCGAATTTCGGTGCAAAGCA-GAACTTCAATAGGGTCTGTGTGTGAG----AGAGAGAGGGAG-AGAAAACT--C---TATTTGATTTAGTTTGATCATAGTTGTATTTGTTGCTTT--TAGTCCCCCTAACGACCGTGAAA-ATAA-GCAACAACATAAAGCTGAAAGCAGAATCAGCATCAACAGAGCGACGCGTCGACGGCGACTGCGACTGCGACTGCGTTTATGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATCAACAGAGCGACGCGT................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGACGGCGACTGCGACTGC.............2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCATCAACAGAGCGACGCGTC...............................2511.0010000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGCGTCGACGGCGACTGCGACC...............2611.0010010000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACTGCGACTGCGACTGC.......20200.0510100000000
droPer2
CCCCCGCGCGATAG-ACCAACGCCTCGC------C----------------CAGCAACT-TCTGTTACTTCTTTTGCTCCATCGCGAAGAAATTCTTCGTTTTTTTTTTGTTGTTTTGTGA-ATTTCCTTGTGCCGACGATTCCTTGTCCCA---CTCCATTTATTCATTCTGTTCTTGTTGTTGTCGTGCTTTCCCCTCCCTTT-CTTCAGTCCTTTTTTTGTGAATTTCC--------TACCCGCTGCGCCCGCAGGATATATCT--CCTGTTCA-TT-TTTTGGTGTTCCCTCCCCCCACTCGTACGTGTTTAATTATAGTTTCGCTGCGCC--------------GTTCTCTCGCTTTACTACTCTCCCGCATTCATAC------------------A--------TATCTC-TTCCAATTAGCGGCCCGTGTGCCTCGAATTTCGGTGCAAAGCA-GAACTTCAATACGGTCTGTGTGTGAGAGAGAGAGAGAGGGAG-AGAAAACT--C---TATTTGATTTAGTTTGATCATAGTTGTATTTGTTGCTTT--TAGTCCCCCTAACGACCGTGAAA-ATAA-GCAACAACATAAAGCTGAAAGCAGAATCAGCATCAACAGAGCGACGCGTCGACGGCGAC------TGCGACTGCGTTTAT-SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAATCAGCATCAACAGAGCGA.....................................2411.001010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTTGTATTTGTTGCG..................................................................................................................1811.001100000
............................................................................................................TGTTGTTTTGTGA-ATTTCCTTGTGCC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAGCGACGCGTCGACG...........................1911.001100000

Generated: 05/18/2015 at 11:23 AM